Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4407 and Psyr_4408 are separated by 91 nucleotides Psyr_4408 and Psyr_4409 are separated by 69 nucleotides Psyr_4409 and Psyr_4410 are separated by 6 nucleotides
Psyr_4407: Psyr_4407 - phosphoribosylamine--glycine ligase, at 5,269,495 to 5,270,790
_4407
Psyr_4408: Psyr_4408 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase, at 5,270,882 to 5,273,671
_4408
Psyr_4409: Psyr_4409 - Multiple antibiotic resistance (MarC)-related protein, at 5,273,741 to 5,274,337
_4409
Psyr_4410: Psyr_4410 - conserved hypothetical protein, at 5,274,344 to 5,274,979
_4410
Position (kb) 5270
5271
5272
5273
5274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5270.108 kb on + strand, within Psyr_4407 at 5270.109 kb on - strand, within Psyr_4407 at 5270.188 kb on + strand, within Psyr_4407 at 5270.287 kb on + strand, within Psyr_4407 at 5270.524 kb on + strand, within Psyr_4407 at 5270.639 kb on + strand, within Psyr_4407 at 5270.639 kb on + strand, within Psyr_4407 at 5270.639 kb on + strand, within Psyr_4407 at 5270.905 kb on - strand at 5271.096 kb on + strand at 5271.096 kb on + strand at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.179 kb on + strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.180 kb on - strand, within Psyr_4408 at 5271.213 kb on + strand, within Psyr_4408 at 5271.214 kb on - strand, within Psyr_4408 at 5271.214 kb on - strand, within Psyr_4408 at 5271.214 kb on - strand, within Psyr_4408 at 5271.231 kb on + strand, within Psyr_4408 at 5271.304 kb on + strand, within Psyr_4408 at 5271.307 kb on - strand, within Psyr_4408 at 5271.309 kb on - strand, within Psyr_4408 at 5271.508 kb on - strand, within Psyr_4408 at 5271.626 kb on + strand, within Psyr_4408 at 5271.626 kb on + strand, within Psyr_4408 at 5271.627 kb on - strand, within Psyr_4408 at 5271.632 kb on + strand, within Psyr_4408 at 5271.876 kb on - strand, within Psyr_4408 at 5272.181 kb on + strand, within Psyr_4408 at 5272.324 kb on + strand, within Psyr_4408 at 5272.531 kb on + strand, within Psyr_4408 at 5272.531 kb on + strand, within Psyr_4408 at 5272.532 kb on - strand, within Psyr_4408 at 5272.609 kb on + strand, within Psyr_4408 at 5272.720 kb on + strand, within Psyr_4408 at 5272.721 kb on - strand, within Psyr_4408 at 5272.723 kb on + strand, within Psyr_4408 at 5272.723 kb on + strand, within Psyr_4408 at 5272.723 kb on + strand, within Psyr_4408 at 5272.724 kb on - strand, within Psyr_4408 at 5273.475 kb on + strand at 5273.479 kb on + strand at 5273.699 kb on + strand at 5273.699 kb on + strand at 5273.699 kb on + strand at 5273.700 kb on - strand at 5273.786 kb on + strand at 5273.787 kb on - strand at 5273.787 kb on - strand at 5273.899 kb on - strand, within Psyr_4409 at 5273.906 kb on + strand, within Psyr_4409 at 5273.906 kb on + strand, within Psyr_4409 at 5273.906 kb on + strand, within Psyr_4409 at 5273.906 kb on + strand, within Psyr_4409 at 5273.907 kb on - strand, within Psyr_4409 at 5273.934 kb on + strand, within Psyr_4409 at 5273.935 kb on - strand, within Psyr_4409 at 5273.935 kb on - strand, within Psyr_4409 at 5273.935 kb on - strand, within Psyr_4409 at 5273.935 kb on - strand, within Psyr_4409 at 5273.935 kb on - strand, within Psyr_4409 at 5274.037 kb on + strand, within Psyr_4409 at 5274.167 kb on - strand, within Psyr_4409 at 5274.203 kb on + strand, within Psyr_4409 at 5274.204 kb on - strand, within Psyr_4409 at 5274.204 kb on - strand, within Psyr_4409 at 5274.349 kb on + strand at 5274.349 kb on + strand at 5274.349 kb on + strand at 5274.349 kb on + strand at 5274.349 kb on + strand at 5274.350 kb on - strand at 5274.350 kb on - strand at 5274.350 kb on - strand at 5274.350 kb on - strand at 5274.390 kb on + strand at 5274.420 kb on + strand, within Psyr_4410 at 5274.421 kb on - strand, within Psyr_4410 at 5274.421 kb on - strand, within Psyr_4410 at 5274.421 kb on - strand, within Psyr_4410 at 5274.428 kb on - strand, within Psyr_4410 at 5274.441 kb on + strand, within Psyr_4410 at 5274.442 kb on - strand, within Psyr_4410 at 5274.442 kb on - strand, within Psyr_4410 at 5274.489 kb on + strand, within Psyr_4410 at 5274.489 kb on + strand, within Psyr_4410 at 5274.546 kb on + strand, within Psyr_4410 at 5274.546 kb on + strand, within Psyr_4410 at 5274.546 kb on + strand, within Psyr_4410 at 5274.546 kb on + strand, within Psyr_4410 at 5274.547 kb on - strand, within Psyr_4410 at 5274.547 kb on - strand, within Psyr_4410 at 5274.609 kb on + strand, within Psyr_4410 at 5274.609 kb on + strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410 at 5274.610 kb on - strand, within Psyr_4410
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 5,270,108 + Psyr_4407 0.47 -2.5 5,270,109 - Psyr_4407 0.47 -1.5 5,270,188 + Psyr_4407 0.53 -1.7 5,270,287 + Psyr_4407 0.61 -1.8 5,270,524 + Psyr_4407 0.79 -1.8 5,270,639 + Psyr_4407 0.88 -1.1 5,270,639 + Psyr_4407 0.88 -2.1 5,270,639 + Psyr_4407 0.88 -1.1 5,270,905 - -2.6 5,271,096 + -1.3 5,271,096 + +1.2 5,271,179 + Psyr_4408 0.11 -0.5 5,271,179 + Psyr_4408 0.11 -1.8 5,271,179 + Psyr_4408 0.11 -0.1 5,271,179 + Psyr_4408 0.11 -2.4 5,271,179 + Psyr_4408 0.11 -0.5 5,271,179 + Psyr_4408 0.11 -2.0 5,271,179 + Psyr_4408 0.11 -2.3 5,271,179 + Psyr_4408 0.11 -3.4 5,271,179 + Psyr_4408 0.11 -1.3 5,271,179 + Psyr_4408 0.11 -2.4 5,271,179 + Psyr_4408 0.11 +0.5 5,271,179 + Psyr_4408 0.11 -2.0 5,271,179 + Psyr_4408 0.11 +0.2 5,271,179 + Psyr_4408 0.11 +1.2 5,271,179 + Psyr_4408 0.11 +1.8 5,271,179 + Psyr_4408 0.11 -2.3 5,271,179 + Psyr_4408 0.11 -1.8 5,271,179 + Psyr_4408 0.11 -1.8 5,271,180 - Psyr_4408 0.11 -0.5 5,271,180 - Psyr_4408 0.11 +1.5 5,271,180 - Psyr_4408 0.11 -0.3 5,271,180 - Psyr_4408 0.11 +0.3 5,271,180 - Psyr_4408 0.11 +1.5 5,271,180 - Psyr_4408 0.11 -1.2 5,271,180 - Psyr_4408 0.11 -1.8 5,271,180 - Psyr_4408 0.11 -1.1 5,271,180 - Psyr_4408 0.11 -1.8 5,271,180 - Psyr_4408 0.11 -1.5 5,271,180 - Psyr_4408 0.11 -2.2 5,271,180 - Psyr_4408 0.11 -1.1 5,271,180 - Psyr_4408 0.11 -1.8 5,271,180 - Psyr_4408 0.11 +0.5 5,271,180 - Psyr_4408 0.11 -0.5 5,271,180 - Psyr_4408 0.11 -0.8 5,271,180 - Psyr_4408 0.11 -1.5 5,271,213 + Psyr_4408 0.12 -1.3 5,271,214 - Psyr_4408 0.12 -2.5 5,271,214 - Psyr_4408 0.12 -1.5 5,271,214 - Psyr_4408 0.12 -1.5 5,271,231 + Psyr_4408 0.13 +0.3 5,271,304 + Psyr_4408 0.15 -2.0 5,271,307 - Psyr_4408 0.15 -2.3 5,271,309 - Psyr_4408 0.15 -2.0 5,271,508 - Psyr_4408 0.22 +0.1 5,271,626 + Psyr_4408 0.27 -1.5 5,271,626 + Psyr_4408 0.27 -1.1 5,271,627 - Psyr_4408 0.27 -0.3 5,271,632 + Psyr_4408 0.27 -2.0 5,271,876 - Psyr_4408 0.36 -0.7 5,272,181 + Psyr_4408 0.47 -2.0 5,272,324 + Psyr_4408 0.52 -0.1 5,272,531 + Psyr_4408 0.59 -2.0 5,272,531 + Psyr_4408 0.59 -1.3 5,272,532 - Psyr_4408 0.59 -1.5 5,272,609 + Psyr_4408 0.62 -1.1 5,272,720 + Psyr_4408 0.66 -2.2 5,272,721 - Psyr_4408 0.66 -1.7 5,272,723 + Psyr_4408 0.66 -1.1 5,272,723 + Psyr_4408 0.66 -2.4 5,272,723 + Psyr_4408 0.66 -0.5 5,272,724 - Psyr_4408 0.66 -1.8 5,273,475 + -1.7 5,273,479 + +0.5 5,273,699 + +1.3 5,273,699 + -0.1 5,273,699 + -0.1 5,273,700 - +1.7 5,273,786 + -1.8 5,273,787 - +1.4 5,273,787 - -1.3 5,273,899 - Psyr_4409 0.26 -0.1 5,273,906 + Psyr_4409 0.28 +0.2 5,273,906 + Psyr_4409 0.28 -0.7 5,273,906 + Psyr_4409 0.28 +0.7 5,273,906 + Psyr_4409 0.28 +0.1 5,273,907 - Psyr_4409 0.28 +1.2 5,273,934 + Psyr_4409 0.32 +0.1 5,273,935 - Psyr_4409 0.32 +2.5 5,273,935 - Psyr_4409 0.32 -0.1 5,273,935 - Psyr_4409 0.32 -2.6 5,273,935 - Psyr_4409 0.32 +0.3 5,273,935 - Psyr_4409 0.32 +1.2 5,274,037 + Psyr_4409 0.50 -0.3 5,274,167 - Psyr_4409 0.71 -0.5 5,274,203 + Psyr_4409 0.77 -0.2 5,274,204 - Psyr_4409 0.78 +1.8 5,274,204 - Psyr_4409 0.78 +0.9 5,274,349 + +2.5 5,274,349 + -0.8 5,274,349 + -2.3 5,274,349 + -1.1 5,274,349 + +0.1 5,274,350 - -1.8 5,274,350 - +1.1 5,274,350 - +0.2 5,274,350 - -1.7 5,274,390 + +1.5 5,274,420 + Psyr_4410 0.12 +0.5 5,274,421 - Psyr_4410 0.12 +1.6 5,274,421 - Psyr_4410 0.12 +0.1 5,274,421 - Psyr_4410 0.12 -2.5 5,274,428 - Psyr_4410 0.13 +0.1 5,274,441 + Psyr_4410 0.15 -2.0 5,274,442 - Psyr_4410 0.15 -0.2 5,274,442 - Psyr_4410 0.15 +0.7 5,274,489 + Psyr_4410 0.23 +0.2 5,274,489 + Psyr_4410 0.23 -0.1 5,274,546 + Psyr_4410 0.32 +1.0 5,274,546 + Psyr_4410 0.32 +0.5 5,274,546 + Psyr_4410 0.32 +1.0 5,274,546 + Psyr_4410 0.32 +1.4 5,274,547 - Psyr_4410 0.32 +0.4 5,274,547 - Psyr_4410 0.32 +1.7 5,274,609 + Psyr_4410 0.42 +1.7 5,274,609 + Psyr_4410 0.42 -3.0 5,274,610 - Psyr_4410 0.42 -0.3 5,274,610 - Psyr_4410 0.42 -1.8 5,274,610 - Psyr_4410 0.42 -1.7 5,274,610 - Psyr_4410 0.42 -1.3 5,274,610 - Psyr_4410 0.42 +1.0 5,274,610 - Psyr_4410 0.42 -0.5
Or see this region's nucleotide sequence