Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4226 and Psyr_4227 are separated by 164 nucleotides Psyr_4227 and Psyr_4228 are separated by 299 nucleotides
Psyr_4226: Psyr_4226 - D-galactonate transporter, at 5,032,887 to 5,034,272
_4226
Psyr_4227: Psyr_4227 - Dihydrodipicolinate synthetase, at 5,034,437 to 5,035,348
_4227
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Position (kb) 5034
5035
5036 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5033.455 kb on + strand, within Psyr_4226 at 5033.455 kb on + strand, within Psyr_4226 at 5033.456 kb on - strand, within Psyr_4226 at 5033.456 kb on - strand, within Psyr_4226 at 5033.482 kb on + strand, within Psyr_4226 at 5033.482 kb on + strand, within Psyr_4226 at 5033.482 kb on + strand, within Psyr_4226 at 5033.483 kb on - strand, within Psyr_4226 at 5033.483 kb on - strand, within Psyr_4226 at 5033.483 kb on - strand, within Psyr_4226 at 5033.483 kb on - strand, within Psyr_4226 at 5033.483 kb on - strand, within Psyr_4226 at 5033.504 kb on - strand, within Psyr_4226 at 5033.515 kb on + strand, within Psyr_4226 at 5033.515 kb on + strand, within Psyr_4226 at 5033.515 kb on + strand, within Psyr_4226 at 5033.515 kb on + strand, within Psyr_4226 at 5033.516 kb on - strand, within Psyr_4226 at 5033.516 kb on - strand, within Psyr_4226 at 5033.516 kb on - strand, within Psyr_4226 at 5033.516 kb on - strand, within Psyr_4226 at 5033.516 kb on - strand, within Psyr_4226 at 5033.519 kb on + strand, within Psyr_4226 at 5033.519 kb on + strand, within Psyr_4226 at 5033.520 kb on - strand, within Psyr_4226 at 5033.531 kb on + strand, within Psyr_4226 at 5033.531 kb on + strand, within Psyr_4226 at 5033.531 kb on + strand, within Psyr_4226 at 5033.531 kb on + strand, within Psyr_4226 at 5033.531 kb on + strand, within Psyr_4226 at 5033.532 kb on - strand, within Psyr_4226 at 5033.532 kb on - strand, within Psyr_4226 at 5033.532 kb on - strand, within Psyr_4226 at 5033.557 kb on + strand, within Psyr_4226 at 5033.557 kb on + strand, within Psyr_4226 at 5033.557 kb on + strand, within Psyr_4226 at 5033.557 kb on + strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.558 kb on - strand, within Psyr_4226 at 5033.601 kb on - strand, within Psyr_4226 at 5033.692 kb on + strand, within Psyr_4226 at 5033.693 kb on - strand, within Psyr_4226 at 5033.693 kb on - strand, within Psyr_4226 at 5033.693 kb on - strand, within Psyr_4226 at 5033.767 kb on + strand, within Psyr_4226 at 5033.767 kb on + strand, within Psyr_4226 at 5033.767 kb on + strand, within Psyr_4226 at 5033.768 kb on - strand, within Psyr_4226 at 5033.773 kb on + strand, within Psyr_4226 at 5033.773 kb on + strand, within Psyr_4226 at 5033.774 kb on - strand, within Psyr_4226 at 5033.774 kb on - strand, within Psyr_4226 at 5033.774 kb on - strand, within Psyr_4226 at 5033.818 kb on + strand, within Psyr_4226 at 5033.819 kb on - strand, within Psyr_4226 at 5033.819 kb on - strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.986 kb on + strand, within Psyr_4226 at 5033.987 kb on - strand, within Psyr_4226 at 5034.034 kb on + strand, within Psyr_4226 at 5034.035 kb on - strand, within Psyr_4226 at 5034.094 kb on + strand, within Psyr_4226 at 5034.094 kb on + strand, within Psyr_4226 at 5034.094 kb on + strand, within Psyr_4226 at 5034.094 kb on + strand, within Psyr_4226 at 5034.095 kb on - strand, within Psyr_4226 at 5034.095 kb on - strand, within Psyr_4226 at 5034.119 kb on + strand, within Psyr_4226 at 5034.119 kb on + strand, within Psyr_4226 at 5034.119 kb on + strand, within Psyr_4226 at 5034.119 kb on + strand, within Psyr_4226 at 5034.120 kb on - strand, within Psyr_4226 at 5034.120 kb on - strand, within Psyr_4226 at 5034.121 kb on + strand, within Psyr_4226 at 5034.121 kb on + strand, within Psyr_4226 at 5034.121 kb on + strand, within Psyr_4226 at 5034.121 kb on + strand, within Psyr_4226 at 5034.121 kb on + strand, within Psyr_4226 at 5034.121 kb on + strand at 5034.122 kb on - strand, within Psyr_4226 at 5034.122 kb on - strand, within Psyr_4226 at 5034.199 kb on + strand at 5034.200 kb on - strand at 5034.200 kb on - strand at 5034.241 kb on + strand at 5034.275 kb on + strand at 5034.276 kb on - strand at 5034.325 kb on + strand at 5034.438 kb on + strand at 5034.604 kb on - strand, within Psyr_4227 at 5034.627 kb on + strand, within Psyr_4227 at 5034.627 kb on + strand, within Psyr_4227 at 5034.627 kb on + strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.628 kb on - strand, within Psyr_4227 at 5034.669 kb on + strand, within Psyr_4227 at 5034.669 kb on + strand, within Psyr_4227 at 5034.670 kb on - strand, within Psyr_4227 at 5034.670 kb on - strand, within Psyr_4227 at 5034.718 kb on - strand, within Psyr_4227 at 5034.742 kb on - strand, within Psyr_4227 at 5034.753 kb on + strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.832 kb on + strand, within Psyr_4227 at 5034.927 kb on + strand, within Psyr_4227 at 5034.927 kb on + strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5035.008 kb on + strand, within Psyr_4227 at 5035.009 kb on - strand, within Psyr_4227 at 5035.009 kb on - strand, within Psyr_4227 at 5035.091 kb on + strand, within Psyr_4227 at 5035.091 kb on + strand, within Psyr_4227 at 5035.092 kb on - strand, within Psyr_4227 at 5035.349 kb on + strand at 5035.349 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.431 kb on - strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.566 kb on - strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.586 kb on - strand at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.895 kb on + strand, within Psyr_4228 at 5035.896 kb on - strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.093 kb on - strand, within Psyr_4228 at 5036.313 kb on + strand, within Psyr_4228
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 5,033,455 + Psyr_4226 0.41 -1.8 5,033,455 + Psyr_4226 0.41 -1.6 5,033,456 - Psyr_4226 0.41 +5.5 5,033,456 - Psyr_4226 0.41 -2.5 5,033,482 + Psyr_4226 0.43 +0.6 5,033,482 + Psyr_4226 0.43 +1.2 5,033,482 + Psyr_4226 0.43 +1.1 5,033,483 - Psyr_4226 0.43 -2.3 5,033,483 - Psyr_4226 0.43 -0.5 5,033,483 - Psyr_4226 0.43 -1.6 5,033,483 - Psyr_4226 0.43 -0.1 5,033,483 - Psyr_4226 0.43 +0.1 5,033,504 - Psyr_4226 0.45 +2.3 5,033,515 + Psyr_4226 0.45 -2.0 5,033,515 + Psyr_4226 0.45 -0.1 5,033,515 + Psyr_4226 0.45 -1.1 5,033,515 + Psyr_4226 0.45 -2.9 5,033,516 - Psyr_4226 0.45 -0.3 5,033,516 - Psyr_4226 0.45 -0.3 5,033,516 - Psyr_4226 0.45 +1.2 5,033,516 - Psyr_4226 0.45 +0.5 5,033,516 - Psyr_4226 0.45 +1.8 5,033,519 + Psyr_4226 0.46 +0.4 5,033,519 + Psyr_4226 0.46 -0.3 5,033,520 - Psyr_4226 0.46 -1.0 5,033,531 + Psyr_4226 0.46 -1.5 5,033,531 + Psyr_4226 0.46 +1.1 5,033,531 + Psyr_4226 0.46 -1.4 5,033,531 + Psyr_4226 0.46 -0.3 5,033,531 + Psyr_4226 0.46 +0.6 5,033,532 - Psyr_4226 0.47 -2.3 5,033,532 - Psyr_4226 0.47 -1.2 5,033,532 - Psyr_4226 0.47 -1.0 5,033,557 + Psyr_4226 0.48 +0.4 5,033,557 + Psyr_4226 0.48 -0.0 5,033,557 + Psyr_4226 0.48 -1.7 5,033,557 + Psyr_4226 0.48 -1.6 5,033,558 - Psyr_4226 0.48 +0.9 5,033,558 - Psyr_4226 0.48 +0.2 5,033,558 - Psyr_4226 0.48 -2.6 5,033,558 - Psyr_4226 0.48 -1.2 5,033,558 - Psyr_4226 0.48 -0.5 5,033,558 - Psyr_4226 0.48 +1.7 5,033,558 - Psyr_4226 0.48 -2.5 5,033,558 - Psyr_4226 0.48 +0.4 5,033,558 - Psyr_4226 0.48 -1.4 5,033,558 - Psyr_4226 0.48 -0.0 5,033,601 - Psyr_4226 0.52 +2.2 5,033,692 + Psyr_4226 0.58 +1.0 5,033,693 - Psyr_4226 0.58 +1.6 5,033,693 - Psyr_4226 0.58 +1.0 5,033,693 - Psyr_4226 0.58 +0.5 5,033,767 + Psyr_4226 0.63 +1.1 5,033,767 + Psyr_4226 0.63 -1.3 5,033,767 + Psyr_4226 0.63 +0.8 5,033,768 - Psyr_4226 0.64 +0.1 5,033,773 + Psyr_4226 0.64 +1.2 5,033,773 + Psyr_4226 0.64 -0.6 5,033,774 - Psyr_4226 0.64 -1.4 5,033,774 - Psyr_4226 0.64 +1.7 5,033,774 - Psyr_4226 0.64 -1.5 5,033,818 + Psyr_4226 0.67 +1.3 5,033,819 - Psyr_4226 0.67 -2.1 5,033,819 - Psyr_4226 0.67 -0.7 5,033,986 + Psyr_4226 0.79 +0.6 5,033,986 + Psyr_4226 0.79 +1.2 5,033,986 + Psyr_4226 0.79 +2.2 5,033,986 + Psyr_4226 0.79 +0.7 5,033,986 + Psyr_4226 0.79 +0.5 5,033,986 + Psyr_4226 0.79 +1.6 5,033,986 + Psyr_4226 0.79 +1.0 5,033,987 - Psyr_4226 0.79 -0.7 5,034,034 + Psyr_4226 0.83 -0.4 5,034,035 - Psyr_4226 0.83 -0.9 5,034,094 + Psyr_4226 0.87 +0.9 5,034,094 + Psyr_4226 0.87 -1.7 5,034,094 + Psyr_4226 0.87 -0.4 5,034,094 + Psyr_4226 0.87 -0.6 5,034,095 - Psyr_4226 0.87 +3.2 5,034,095 - Psyr_4226 0.87 -0.8 5,034,119 + Psyr_4226 0.89 +0.9 5,034,119 + Psyr_4226 0.89 -2.0 5,034,119 + Psyr_4226 0.89 -0.5 5,034,119 + Psyr_4226 0.89 -1.0 5,034,120 - Psyr_4226 0.89 -1.8 5,034,120 - Psyr_4226 0.89 +0.2 5,034,121 + Psyr_4226 0.89 +0.8 5,034,121 + Psyr_4226 0.89 +1.6 5,034,121 + Psyr_4226 0.89 -0.0 5,034,121 + Psyr_4226 0.89 -2.5 5,034,121 + Psyr_4226 0.89 -1.7 5,034,121 + -0.0 5,034,122 - Psyr_4226 0.89 +0.3 5,034,122 - Psyr_4226 0.89 +0.6 5,034,199 + -2.5 5,034,200 - -0.5 5,034,200 - +1.6 5,034,241 + +1.4 5,034,275 + -0.7 5,034,276 - -1.6 5,034,325 + +1.8 5,034,438 + +0.5 5,034,604 - Psyr_4227 0.18 -2.5 5,034,627 + Psyr_4227 0.21 -0.1 5,034,627 + Psyr_4227 0.21 +1.6 5,034,627 + Psyr_4227 0.21 +0.1 5,034,628 - Psyr_4227 0.21 +0.3 5,034,628 - Psyr_4227 0.21 +2.2 5,034,628 - Psyr_4227 0.21 -1.6 5,034,628 - Psyr_4227 0.21 +0.4 5,034,628 - Psyr_4227 0.21 +0.2 5,034,628 - Psyr_4227 0.21 -0.9 5,034,628 - Psyr_4227 0.21 +0.2 5,034,628 - Psyr_4227 0.21 -2.3 5,034,669 + Psyr_4227 0.25 -2.7 5,034,669 + Psyr_4227 0.25 +0.1 5,034,670 - Psyr_4227 0.26 -0.8 5,034,670 - Psyr_4227 0.26 +0.7 5,034,718 - Psyr_4227 0.31 -0.7 5,034,742 - Psyr_4227 0.33 -0.0 5,034,753 + Psyr_4227 0.35 +1.2 5,034,754 - Psyr_4227 0.35 +0.4 5,034,754 - Psyr_4227 0.35 +1.1 5,034,832 + Psyr_4227 0.43 +0.3 5,034,927 + Psyr_4227 0.54 +2.8 5,034,927 + Psyr_4227 0.54 +0.4 5,034,928 - Psyr_4227 0.54 +2.7 5,034,928 - Psyr_4227 0.54 -0.4 5,034,928 - Psyr_4227 0.54 +0.4 5,034,928 - Psyr_4227 0.54 -1.4 5,034,928 - Psyr_4227 0.54 +1.9 5,035,008 + Psyr_4227 0.63 +1.8 5,035,009 - Psyr_4227 0.63 -3.2 5,035,009 - Psyr_4227 0.63 +0.8 5,035,091 + Psyr_4227 0.72 +0.7 5,035,091 + Psyr_4227 0.72 +3.3 5,035,092 - Psyr_4227 0.72 -1.4 5,035,349 + -1.8 5,035,349 + -0.9 5,035,371 + -1.9 5,035,371 + -3.4 5,035,371 + -0.4 5,035,371 + +0.6 5,035,371 + -1.8 5,035,371 + +0.2 5,035,372 - +1.2 5,035,372 - -2.2 5,035,372 - +3.4 5,035,372 - -0.6 5,035,372 - +0.6 5,035,372 - +0.9 5,035,372 - +0.7 5,035,372 - -1.0 5,035,372 - +0.9 5,035,431 - -2.7 5,035,507 + -0.1 5,035,507 + -1.7 5,035,507 + +0.6 5,035,507 + +2.2 5,035,507 + +0.4 5,035,507 + -0.6 5,035,507 + -0.2 5,035,507 + -0.0 5,035,507 + -1.1 5,035,508 - -1.7 5,035,508 - +1.5 5,035,508 - -0.9 5,035,508 - +0.3 5,035,508 - -0.6 5,035,508 - -0.7 5,035,508 - -1.0 5,035,508 - -2.9 5,035,508 - -1.4 5,035,508 - +0.3 5,035,508 - -2.0 5,035,565 + +0.9 5,035,565 + +0.5 5,035,565 + +0.7 5,035,565 + -0.7 5,035,565 + +0.1 5,035,566 - +1.9 5,035,566 - -0.5 5,035,566 - -0.7 5,035,585 + -1.7 5,035,585 + -0.7 5,035,585 + +2.2 5,035,585 + -2.0 5,035,585 + +0.4 5,035,586 - +1.6 5,035,800 + Psyr_4228 0.20 -0.5 5,035,800 + Psyr_4228 0.20 -2.0 5,035,800 + Psyr_4228 0.20 +0.6 5,035,800 + Psyr_4228 0.20 +0.8 5,035,800 + Psyr_4228 0.20 +1.5 5,035,800 + Psyr_4228 0.20 +1.1 5,035,800 + Psyr_4228 0.20 -0.7 5,035,800 + Psyr_4228 0.20 +2.0 5,035,801 - Psyr_4228 0.20 +0.3 5,035,801 - Psyr_4228 0.20 +0.9 5,035,801 - Psyr_4228 0.20 +1.2 5,035,801 - Psyr_4228 0.20 -1.6 5,035,801 - Psyr_4228 0.20 +3.0 5,035,801 - Psyr_4228 0.20 +0.4 5,035,801 - Psyr_4228 0.20 -0.1 5,035,802 + Psyr_4228 0.21 -1.9 5,035,802 + Psyr_4228 0.21 +1.6 5,035,802 + Psyr_4228 0.21 +1.3 5,035,802 + Psyr_4228 0.21 -1.6 5,035,802 + Psyr_4228 0.21 -0.8 5,035,802 + Psyr_4228 0.21 -1.9 5,035,802 + Psyr_4228 0.21 -1.5 5,035,803 - Psyr_4228 0.21 -1.0 5,035,803 - Psyr_4228 0.21 +1.3 5,035,803 - Psyr_4228 0.21 -2.0 5,035,803 - Psyr_4228 0.21 -1.2 5,035,803 - Psyr_4228 0.21 -0.1 5,035,803 - Psyr_4228 0.21 -0.9 5,035,803 - Psyr_4228 0.21 +1.2 5,035,803 - Psyr_4228 0.21 +1.7 5,035,803 - Psyr_4228 0.21 +0.4 5,035,803 - Psyr_4228 0.21 -1.2 5,035,803 - Psyr_4228 0.21 +1.0 5,035,895 + Psyr_4228 0.33 -0.5 5,035,896 - Psyr_4228 0.33 +0.2 5,036,092 + Psyr_4228 0.59 -2.7 5,036,092 + Psyr_4228 0.59 -0.5 5,036,093 - Psyr_4228 0.59 +1.3 5,036,093 - Psyr_4228 0.59 +1.7 5,036,093 - Psyr_4228 0.59 -1.3 5,036,093 - Psyr_4228 0.59 +1.5 5,036,313 + Psyr_4228 0.89 +1.7
Or see this region's nucleotide sequence