Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4224

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,029,976	+				+0.1
5,029,976	+				-0.4
5,029,976	+				-1.7
5,029,977	-				+1.6
5,029,977	-				-2.5
5,030,028	+		Psyr_4223	0.12	-0.9
5,030,028	+		Psyr_4223	0.12	-0.0
5,030,028	+		Psyr_4223	0.12	-0.4
5,030,028	+		Psyr_4223	0.12	-0.4
5,030,028	+		Psyr_4223	0.12	-2.4
5,030,028	+		Psyr_4223	0.12	+0.2
5,030,028	+		Psyr_4223	0.12	-0.6
5,030,028	+		Psyr_4223	0.12	+0.8
5,030,028	+		Psyr_4223	0.12	-0.9
5,030,028	+		Psyr_4223	0.12	-3.1
5,030,028	+		Psyr_4223	0.12	-0.4
5,030,028	+		Psyr_4223	0.12	+0.2
5,030,028	+		Psyr_4223	0.12	-0.8
5,030,028	+		Psyr_4223	0.12	-1.7
5,030,028	+		Psyr_4223	0.12	-0.4
5,030,028	+		Psyr_4223	0.12	+0.2
5,030,028	+		Psyr_4223	0.12	+1.1
5,030,028	+		Psyr_4223	0.12	+1.3
5,030,028	+		Psyr_4223	0.12	+2.4
5,030,028	+		Psyr_4223	0.12	-0.1
5,030,028	+		Psyr_4223	0.12	-1.2
5,030,028	+		Psyr_4223	0.12	+2.6
5,030,028	+		Psyr_4223	0.12	+0.1
5,030,028	+		Psyr_4223	0.12	-2.3
5,030,028	+		Psyr_4223	0.12	-1.9
5,030,028	+		Psyr_4223	0.12	+2.6
5,030,028	+		Psyr_4223	0.12	+1.2
5,030,028	+		Psyr_4223	0.12	+1.1
5,030,028	+		Psyr_4223	0.12	+0.4
5,030,028	+		Psyr_4223	0.12	-0.0
5,030,028	+		Psyr_4223	0.12	-1.1
5,030,028	+		Psyr_4223	0.12	-0.4
5,030,028	+		Psyr_4223	0.12	+0.2
5,030,028	+		Psyr_4223	0.12	-1.2
5,030,029	-		Psyr_4223	0.13	-1.9
5,030,029	-		Psyr_4223	0.13	-1.7
5,030,029	-		Psyr_4223	0.13	-2.0
5,030,029	-		Psyr_4223	0.13	-2.2
5,030,029	-		Psyr_4223	0.13	-1.2
5,030,029	-		Psyr_4223	0.13	-0.9
5,030,029	-		Psyr_4223	0.13	+0.2
5,030,029	-		Psyr_4223	0.13	+0.9
5,030,029	-		Psyr_4223	0.13	+1.6
5,030,029	-		Psyr_4223	0.13	+1.4
5,030,029	-		Psyr_4223	0.13	-1.4
5,030,029	-		Psyr_4223	0.13	+1.1
5,030,029	-		Psyr_4223	0.13	+1.2
5,030,029	-		Psyr_4223	0.13	-0.4
5,030,029	-		Psyr_4223	0.13	-1.0
5,030,029	-		Psyr_4223	0.13	+1.0
5,030,029	-		Psyr_4223	0.13	-1.2
5,030,029	-		Psyr_4223	0.13	+0.6
5,030,029	-		Psyr_4223	0.13	+0.4
5,030,029	-		Psyr_4223	0.13	+0.1
5,030,029	-		Psyr_4223	0.13	-2.4
5,030,029	-		Psyr_4223	0.13	+3.7
5,030,030	+		Psyr_4223	0.13	+0.5
5,030,030	+		Psyr_4223	0.13	-1.3
5,030,031	-		Psyr_4223	0.14	-1.4
5,030,031	-		Psyr_4223	0.14	-2.0
5,030,049	+		Psyr_4223	0.23	+0.6
5,030,049	+		Psyr_4223	0.23	-1.2
5,030,050	-		Psyr_4223	0.23	+0.8
5,030,050	-		Psyr_4223	0.23	-0.3
5,030,050	-		Psyr_4223	0.23	+1.0
5,030,050	-		Psyr_4223	0.23	-2.1
5,030,050	-		Psyr_4223	0.23	+0.1
5,030,050	-		Psyr_4223	0.23	-1.9
5,030,050	-		Psyr_4223	0.23	+0.6
5,030,050	-		Psyr_4223	0.23	+1.1
5,030,050	-		Psyr_4223	0.23	+1.1
5,030,050	-		Psyr_4223	0.23	+1.6
5,030,052	+		Psyr_4223	0.24	+0.3
5,030,052	+		Psyr_4223	0.24	+1.0
5,030,185	-				+2.1
5,030,202	-				-0.9
5,030,287	+				+1.5
5,030,287	+				-0.7
5,030,287	+				-0.6
5,030,287	+				+0.3
5,030,288	-				+1.1
5,030,362	-				+1.9
5,030,509	+				-2.3
5,030,509	+				-2.3
5,030,509	+				-0.3
5,030,509	+				-1.1
5,030,509	+				-1.5
5,030,509	+				-1.4
5,030,509	+				+0.2
5,030,510	-				-0.2
5,030,624	-				-1.2
5,030,649	+				+1.0
5,030,649	+				+1.5
5,030,649	+				+0.2
5,030,650	-				-2.9
5,030,650	-				-0.3
5,030,687	+				-1.3
5,030,687	+				+1.6
5,030,687	+				-0.6
5,030,687	+				-1.7
5,030,687	+				+1.5
5,030,687	+				-0.7
5,030,687	+				+2.5
5,030,687	+				+0.1
5,030,687	+				+1.1
5,030,688	-				+0.7
5,030,688	-				-2.2
5,030,688	-				-0.7
5,030,688	-				+1.5
5,030,688	-				-1.2
5,030,688	-				-1.2
5,030,688	-				-0.4
5,030,688	-				+0.6
5,030,688	-				+1.0
5,030,688	-				-1.0
5,030,789	+				-0.2
5,030,789	+				+0.6
5,030,789	+				-1.2
5,030,790	-				-2.2
5,030,790	-				-0.0
5,030,790	-				-0.0
5,030,790	-				-2.4
5,030,802	-				+0.8
5,030,802	-				+0.0
5,030,844	+				-0.5
5,030,844	+				-1.7
5,030,844	+				-0.8
5,030,844	+				+0.6
5,030,844	+				+1.3
5,030,844	+				+0.7
5,030,844	+				-0.0
5,030,844	+				+1.5
5,030,845	-				+1.3
5,030,845	-				+0.8
5,030,845	-				+1.0
5,030,845	-				-0.2
5,030,993	-		Psyr_4224	0.64	-1.7
5,030,999	+		Psyr_4224	0.66	-2.7
5,030,999	+		Psyr_4224	0.66	-1.3
5,031,131	+				-0.4
5,031,132	-				-1.2
5,031,153	+				+0.7
5,031,167	+				+2.3
5,031,167	+				+0.8
5,031,251	+				-0.0
5,031,252	-				-1.5
5,031,252	-				-0.5
5,031,252	-				+0.7
5,031,252	-				-1.7
5,031,264	-				+1.0
5,031,264	-				-3.3
5,031,264	-				-0.9
5,031,328	+				+0.4
5,031,329	-				+1.1
5,031,417	+				+1.1
5,031,418	-				-1.5
5,031,485	+		Psyr_4225	0.10	-0.9
5,031,485	+		Psyr_4225	0.10	+0.6
5,031,485	+		Psyr_4225	0.10	-2.2
5,031,485	+		Psyr_4225	0.10	-0.2
5,031,485	+		Psyr_4225	0.10	+1.2
5,031,485	+		Psyr_4225	0.10	+0.8
5,031,485	+		Psyr_4225	0.10	+0.7
5,031,485	+		Psyr_4225	0.10	-1.2
5,031,485	+		Psyr_4225	0.10	+1.9
5,031,485	+		Psyr_4225	0.10	+1.6
5,031,485	+		Psyr_4225	0.10	+1.4
5,031,485	+		Psyr_4225	0.10	+1.1
5,031,485	+		Psyr_4225	0.10	+0.4
5,031,485	+		Psyr_4225	0.10	-0.6
5,031,485	+		Psyr_4225	0.10	+0.6
5,031,485	+		Psyr_4225	0.10	+3.3
5,031,485	+		Psyr_4225	0.10	-0.7
5,031,485	+		Psyr_4225	0.10	+1.4
5,031,485	+		Psyr_4225	0.10	-0.1
5,031,485	+		Psyr_4225	0.10	-2.4
5,031,485	+		Psyr_4225	0.10	+0.4
5,031,485	+		Psyr_4225	0.10	-2.1
5,031,485	+		Psyr_4225	0.10	+0.7
5,031,485	+		Psyr_4225	0.10	+0.2
5,031,485	+		Psyr_4225	0.10	-0.5
5,031,485	+		Psyr_4225	0.10	-0.9
5,031,485	+		Psyr_4225	0.10	+2.1
5,031,485	+		Psyr_4225	0.10	-0.9
5,031,486	-		Psyr_4225	0.10	+2.2
5,031,486	-		Psyr_4225	0.10	+1.9
5,031,486	-		Psyr_4225	0.10	-0.2
5,031,486	-		Psyr_4225	0.10	+0.9
5,031,486	-		Psyr_4225	0.10	+2.9
5,031,486	-		Psyr_4225	0.10	-0.7
5,031,486	-		Psyr_4225	0.10	-1.2
5,031,486	-		Psyr_4225	0.10	+1.6
5,031,486	-		Psyr_4225	0.10	-0.2
5,031,486	-		Psyr_4225	0.10	-1.1
5,031,486	-		Psyr_4225	0.10	+0.1
5,031,486	-		Psyr_4225	0.10	-2.7
5,031,486	-		Psyr_4225	0.10	-0.2
5,031,486	-		Psyr_4225	0.10	-0.3
5,031,486	-		Psyr_4225	0.10	+1.1
5,031,486	-		Psyr_4225	0.10	+2.0
5,031,486	-		Psyr_4225	0.10	-1.6
5,031,486	-		Psyr_4225	0.10	+1.7
5,031,486	-		Psyr_4225	0.10	-1.9
5,031,486	-		Psyr_4225	0.10	+1.0
5,031,590	+		Psyr_4225	0.17	-1.6
5,031,590	+		Psyr_4225	0.17	-2.6
5,031,590	+		Psyr_4225	0.17	-0.6
5,031,590	+		Psyr_4225	0.17	-1.4
5,031,590	+		Psyr_4225	0.17	+0.7
5,031,590	+		Psyr_4225	0.17	-1.6
5,031,590	+		Psyr_4225	0.17	+2.2
5,031,590	+		Psyr_4225	0.17	+0.4
5,031,590	+		Psyr_4225	0.17	-1.5
5,031,590	+		Psyr_4225	0.17	-3.5
5,031,590	+		Psyr_4225	0.17	+1.9
5,031,590	+		Psyr_4225	0.17	-1.6
5,031,591	-		Psyr_4225	0.17	-1.6
5,031,591	-		Psyr_4225	0.17	-1.6
5,031,591	-		Psyr_4225	0.17	+1.1
5,031,591	-		Psyr_4225	0.17	+1.2
5,031,591	-		Psyr_4225	0.17	+0.6
5,031,591	-		Psyr_4225	0.17	-0.6
5,031,591	-		Psyr_4225	0.17	-0.9
5,031,591	-		Psyr_4225	0.17	-2.5
5,031,591	-		Psyr_4225	0.17	-0.9
5,031,591	-		Psyr_4225	0.17	+1.1
5,031,591	-		Psyr_4225	0.17	-0.1
5,031,591	-		Psyr_4225	0.17	-1.5
5,031,591	-		Psyr_4225	0.17	-0.0
5,031,591	-		Psyr_4225	0.17	+1.1
5,031,591	-		Psyr_4225	0.17	+0.5
5,031,591	-		Psyr_4225	0.17	-1.6
5,031,840	+		Psyr_4225	0.33	+0.1
5,031,841	-		Psyr_4225	0.33	-0.7
5,031,906	+		Psyr_4225	0.38	+2.1
5,031,906	+		Psyr_4225	0.38	+0.8
5,031,906	+		Psyr_4225	0.38	-0.5
5,031,906	+		Psyr_4225	0.38	+1.3
5,031,906	+		Psyr_4225	0.38	+1.6
5,031,906	+		Psyr_4225	0.38	+0.4
5,031,906	+		Psyr_4225	0.38	-2.4
5,031,907	-		Psyr_4225	0.38	+0.6
5,031,907	-		Psyr_4225	0.38	-0.1
5,031,907	-		Psyr_4225	0.38	-0.0
5,031,907	-		Psyr_4225	0.38	+0.6
5,031,907	-		Psyr_4225	0.38	+2.6