Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4142 and Psyr_4143 are separated by 29 nucleotides Psyr_4143 and Psyr_4144 are separated by 8 nucleotides Psyr_4144 and Psyr_4145 overlap by 14 nucleotides Psyr_4145 and Psyr_4146 are separated by 0 nucleotides
Psyr_4142: Psyr_4142 - KpsF/GutQ, at 4,931,039 to 4,932,013
_4142
Psyr_4143: Psyr_4143 - HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI, at 4,932,043 to 4,932,552
_4143
Psyr_4144: Psyr_4144 - Protein of unknown function DUF1239, at 4,932,561 to 4,933,133
_4144
Psyr_4145: Psyr_4145 - OstA-like protein, at 4,933,120 to 4,933,668
_4145
Psyr_4146: Psyr_4146 - ABC transporter, at 4,933,669 to 4,934,394
_4146
Position (kb)
4932
4933
4934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4932.011 kb on + strand at 4932.011 kb on + strand at 4932.011 kb on + strand at 4932.011 kb on + strand at 4932.026 kb on + strand at 4932.026 kb on + strand at 4932.112 kb on + strand, within Psyr_4143 at 4932.150 kb on + strand, within Psyr_4143 at 4932.171 kb on + strand, within Psyr_4143 at 4932.334 kb on + strand, within Psyr_4143 at 4932.431 kb on + strand, within Psyr_4143 at 4932.544 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.550 kb on + strand at 4932.550 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.560 kb on + strand at 4932.982 kb on + strand, within Psyr_4144 at 4932.982 kb on + strand, within Psyr_4144 at 4933.108 kb on + strand at 4933.108 kb on + strand at 4933.108 kb on + strand at 4933.108 kb on + strand at 4933.108 kb on + strand at 4933.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 4,932,011 + +2.5 4,932,011 + -0.4 4,932,011 + +0.3 4,932,011 + +0.7 4,932,026 + +0.1 4,932,026 + -0.8 4,932,112 + Psyr_4143 0.14 -0.4 4,932,150 + Psyr_4143 0.21 -3.2 4,932,171 + Psyr_4143 0.25 -2.2 4,932,334 + Psyr_4143 0.57 -1.6 4,932,431 + Psyr_4143 0.76 +3.6 4,932,544 + -3.0 4,932,548 + +0.9 4,932,548 + +0.8 4,932,548 + -0.3 4,932,548 + +0.9 4,932,548 + -2.7 4,932,550 + +1.0 4,932,550 + +0.1 4,932,560 + -3.0 4,932,560 + -2.5 4,932,560 + -0.2 4,932,560 + -2.9 4,932,560 + -1.0 4,932,560 + -1.1 4,932,560 + +0.7 4,932,560 + -0.4 4,932,982 + Psyr_4144 0.73 -1.5 4,932,982 + Psyr_4144 0.73 -1.2 4,933,108 + -1.9 4,933,108 + -0.5 4,933,108 + +1.1 4,933,108 + -1.2 4,933,108 + -2.0 4,933,108 + -0.8
Or see this region's nucleotide sequence