Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4144

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4142 and Psyr_4143 are separated by 29 nucleotidesPsyr_4143 and Psyr_4144 are separated by 8 nucleotidesPsyr_4144 and Psyr_4145 overlap by 14 nucleotidesPsyr_4145 and Psyr_4146 are separated by 0 nucleotides Psyr_4142: Psyr_4142 - KpsF/GutQ, at 4,931,039 to 4,932,013 _4142 Psyr_4143: Psyr_4143 - HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI, at 4,932,043 to 4,932,552 _4143 Psyr_4144: Psyr_4144 - Protein of unknown function DUF1239, at 4,932,561 to 4,933,133 _4144 Psyr_4145: Psyr_4145 - OstA-like protein, at 4,933,120 to 4,933,668 _4145 Psyr_4146: Psyr_4146 - ABC transporter, at 4,933,669 to 4,934,394 _4146 Position (kb) 4932 4933 4934Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4932.011 kb on + strandat 4932.011 kb on + strandat 4932.011 kb on + strandat 4932.011 kb on + strandat 4932.026 kb on + strandat 4932.026 kb on + strandat 4932.112 kb on + strand, within Psyr_4143at 4932.150 kb on + strand, within Psyr_4143at 4932.171 kb on + strand, within Psyr_4143at 4932.334 kb on + strand, within Psyr_4143at 4932.431 kb on + strand, within Psyr_4143at 4932.544 kb on + strandat 4932.548 kb on + strandat 4932.548 kb on + strandat 4932.548 kb on + strandat 4932.548 kb on + strandat 4932.548 kb on + strandat 4932.550 kb on + strandat 4932.550 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.560 kb on + strandat 4932.982 kb on + strand, within Psyr_4144at 4932.982 kb on + strand, within Psyr_4144at 4933.108 kb on + strandat 4933.108 kb on + strandat 4933.108 kb on + strandat 4933.108 kb on + strandat 4933.108 kb on + strandat 4933.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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4,932,011 + +2.5
4,932,011 + -0.4
4,932,011 + +0.3
4,932,011 + +0.7
4,932,026 + +0.1
4,932,026 + -0.8
4,932,112 + Psyr_4143 0.14 -0.4
4,932,150 + Psyr_4143 0.21 -3.2
4,932,171 + Psyr_4143 0.25 -2.2
4,932,334 + Psyr_4143 0.57 -1.6
4,932,431 + Psyr_4143 0.76 +3.6
4,932,544 + -3.0
4,932,548 + +0.9
4,932,548 + +0.8
4,932,548 + -0.3
4,932,548 + +0.9
4,932,548 + -2.7
4,932,550 + +1.0
4,932,550 + +0.1
4,932,560 + -3.0
4,932,560 + -2.5
4,932,560 + -0.2
4,932,560 + -2.9
4,932,560 + -1.0
4,932,560 + -1.1
4,932,560 + +0.7
4,932,560 + -0.4
4,932,982 + Psyr_4144 0.73 -1.5
4,932,982 + Psyr_4144 0.73 -1.2
4,933,108 + -1.9
4,933,108 + -0.5
4,933,108 + +1.1
4,933,108 + -1.2
4,933,108 + -2.0
4,933,108 + -0.8

Or see this region's nucleotide sequence