Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4114 and Psyr_4115 are separated by 161 nucleotides Psyr_4115 and Psyr_4116 overlap by 4 nucleotides Psyr_4116 and Psyr_4117 are separated by 60 nucleotides Psyr_4117 and Psyr_4118 are separated by 17 nucleotides
Psyr_4114: Psyr_4114 - Protein of unknown function UPF0102, at 4,905,592 to 4,905,963
_4114
Psyr_4115: Psyr_4115 - phosphoheptose isomerase, at 4,906,125 to 4,906,718
_4115
Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293
_4116
Psyr_4117: Psyr_4117 - Stringent starvation protein B, at 4,907,354 to 4,907,773
_4117
Psyr_4118: Psyr_4118 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 4,907,791 to 4,908,408
_4118
Position (kb)
4906
4907
4908 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.717 kb on - strand, within Psyr_4114 at 4905.717 kb on - strand, within Psyr_4114 at 4905.735 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.743 kb on + strand, within Psyr_4114 at 4905.743 kb on + strand, within Psyr_4114 at 4906.000 kb on + strand at 4906.026 kb on + strand at 4906.026 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.109 kb on - strand at 4906.109 kb on - strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.413 kb on + strand, within Psyr_4115 at 4906.414 kb on - strand, within Psyr_4115 at 4906.503 kb on - strand, within Psyr_4115 at 4906.505 kb on + strand, within Psyr_4115 at 4906.506 kb on - strand, within Psyr_4115 at 4906.642 kb on + strand, within Psyr_4115 at 4906.724 kb on - strand at 4907.163 kb on + strand, within Psyr_4116 at 4907.164 kb on - strand, within Psyr_4116 at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.283 kb on - strand at 4907.283 kb on - strand at 4907.283 kb on - strand at 4907.341 kb on + strand at 4907.508 kb on + strand, within Psyr_4117 at 4907.508 kb on + strand, within Psyr_4117 at 4907.508 kb on + strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.512 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.535 kb on - strand, within Psyr_4117 at 4907.535 kb on - strand, within Psyr_4117 at 4907.538 kb on + strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.596 kb on + strand, within Psyr_4117 at 4907.596 kb on + strand, within Psyr_4117 at 4907.597 kb on - strand, within Psyr_4117 at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.737 kb on - strand at 4907.737 kb on - strand at 4907.754 kb on + strand at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.932 kb on + strand, within Psyr_4118 at 4907.953 kb on + strand, within Psyr_4118 at 4907.953 kb on + strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4908.126 kb on + strand, within Psyr_4118 at 4908.188 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.213 kb on - strand, within Psyr_4118 at 4908.213 kb on - strand, within Psyr_4118 at 4908.262 kb on + strand, within Psyr_4118 at 4908.263 kb on - strand, within Psyr_4118
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 4,905,716 + Psyr_4114 0.33 +1.8 4,905,716 + Psyr_4114 0.33 +3.1 4,905,716 + Psyr_4114 0.33 +1.8 4,905,716 + Psyr_4114 0.33 +0.8 4,905,716 + Psyr_4114 0.33 -0.8 4,905,716 + Psyr_4114 0.33 -1.0 4,905,716 + Psyr_4114 0.33 +1.8 4,905,716 + Psyr_4114 0.33 +1.7 4,905,717 - Psyr_4114 0.34 -1.2 4,905,717 - Psyr_4114 0.34 -0.4 4,905,735 + Psyr_4114 0.38 -0.2 4,905,740 + Psyr_4114 0.40 +0.3 4,905,740 + Psyr_4114 0.40 +0.5 4,905,740 + Psyr_4114 0.40 +0.1 4,905,740 + Psyr_4114 0.40 +1.2 4,905,740 + Psyr_4114 0.40 +0.6 4,905,743 + Psyr_4114 0.41 -1.4 4,905,743 + Psyr_4114 0.41 -0.2 4,906,000 + +0.1 4,906,026 + +0.2 4,906,026 + +0.7 4,906,108 + -0.0 4,906,108 + +0.8 4,906,108 + +0.8 4,906,108 + +0.3 4,906,109 - +0.1 4,906,109 - -0.6 4,906,112 + -1.2 4,906,112 + -1.4 4,906,112 + -0.6 4,906,112 + +1.2 4,906,413 + Psyr_4115 0.48 +0.2 4,906,414 - Psyr_4115 0.49 -0.8 4,906,503 - Psyr_4115 0.64 +0.9 4,906,505 + Psyr_4115 0.64 +0.7 4,906,506 - Psyr_4115 0.64 +0.2 4,906,642 + Psyr_4115 0.87 -0.0 4,906,724 - +0.1 4,907,163 + Psyr_4116 0.77 -3.5 4,907,164 - Psyr_4116 0.78 -3.6 4,907,282 + +1.2 4,907,282 + -1.0 4,907,282 + +1.6 4,907,282 + -0.8 4,907,282 + +1.2 4,907,282 + +0.4 4,907,282 + +1.7 4,907,282 + -0.2 4,907,283 - -0.1 4,907,283 - -2.2 4,907,283 - -0.7 4,907,341 + +1.9 4,907,508 + Psyr_4117 0.37 +2.8 4,907,508 + Psyr_4117 0.37 -1.4 4,907,508 + Psyr_4117 0.37 -0.5 4,907,509 - Psyr_4117 0.37 -2.7 4,907,509 - Psyr_4117 0.37 -1.8 4,907,509 - Psyr_4117 0.37 +1.4 4,907,512 + Psyr_4117 0.38 +0.6 4,907,534 + Psyr_4117 0.43 -1.9 4,907,534 + Psyr_4117 0.43 -1.4 4,907,534 + Psyr_4117 0.43 -1.6 4,907,535 - Psyr_4117 0.43 +1.5 4,907,535 - Psyr_4117 0.43 +2.8 4,907,538 + Psyr_4117 0.44 -0.6 4,907,539 - Psyr_4117 0.44 -0.9 4,907,539 - Psyr_4117 0.44 +1.2 4,907,539 - Psyr_4117 0.44 +1.0 4,907,539 - Psyr_4117 0.44 -3.5 4,907,539 - Psyr_4117 0.44 -0.3 4,907,596 + Psyr_4117 0.58 +0.7 4,907,596 + Psyr_4117 0.58 -1.1 4,907,597 - Psyr_4117 0.58 -0.8 4,907,736 + +1.3 4,907,736 + +0.6 4,907,736 + -0.5 4,907,736 + -1.6 4,907,737 - +2.6 4,907,737 - +1.0 4,907,754 + +1.7 4,907,861 + Psyr_4118 0.11 -2.2 4,907,861 + Psyr_4118 0.11 -1.0 4,907,861 + Psyr_4118 0.11 -1.3 4,907,861 + Psyr_4118 0.11 -1.0 4,907,861 + Psyr_4118 0.11 -0.9 4,907,862 - Psyr_4118 0.11 -1.0 4,907,862 - Psyr_4118 0.11 -0.0 4,907,862 - Psyr_4118 0.11 -1.8 4,907,862 - Psyr_4118 0.11 +0.2 4,907,862 - Psyr_4118 0.11 +1.6 4,907,862 - Psyr_4118 0.11 -1.2 4,907,862 - Psyr_4118 0.11 +0.1 4,907,932 + Psyr_4118 0.23 -0.5 4,907,953 + Psyr_4118 0.26 -0.4 4,907,953 + Psyr_4118 0.26 -1.8 4,907,954 - Psyr_4118 0.26 -3.2 4,907,954 - Psyr_4118 0.26 -1.4 4,907,954 - Psyr_4118 0.26 -0.8 4,907,954 - Psyr_4118 0.26 +1.3 4,907,954 - Psyr_4118 0.26 -2.7 4,907,954 - Psyr_4118 0.26 -0.0 4,907,954 - Psyr_4118 0.26 -0.6 4,908,126 + Psyr_4118 0.54 +0.6 4,908,188 + Psyr_4118 0.64 +0.3 4,908,212 + Psyr_4118 0.68 -0.0 4,908,212 + Psyr_4118 0.68 -2.2 4,908,212 + Psyr_4118 0.68 +1.6 4,908,213 - Psyr_4118 0.68 +0.1 4,908,213 - Psyr_4118 0.68 +0.2 4,908,262 + Psyr_4118 0.76 +1.2 4,908,263 - Psyr_4118 0.76 -1.2
Or see this region's nucleotide sequence