Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4116

Experiment: apoplastic, chopping recovery; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4114 and Psyr_4115 are separated by 161 nucleotidesPsyr_4115 and Psyr_4116 overlap by 4 nucleotidesPsyr_4116 and Psyr_4117 are separated by 60 nucleotidesPsyr_4117 and Psyr_4118 are separated by 17 nucleotides Psyr_4114: Psyr_4114 - Protein of unknown function UPF0102, at 4,905,592 to 4,905,963 _4114 Psyr_4115: Psyr_4115 - phosphoheptose isomerase, at 4,906,125 to 4,906,718 _4115 Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293 _4116 Psyr_4117: Psyr_4117 - Stringent starvation protein B, at 4,907,354 to 4,907,773 _4117 Psyr_4118: Psyr_4118 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 4,907,791 to 4,908,408 _4118 Position (kb) 4906 4907 4908Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.717 kb on - strand, within Psyr_4114at 4905.717 kb on - strand, within Psyr_4114at 4905.735 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.743 kb on + strand, within Psyr_4114at 4905.743 kb on + strand, within Psyr_4114at 4906.000 kb on + strandat 4906.026 kb on + strandat 4906.026 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.109 kb on - strandat 4906.109 kb on - strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.413 kb on + strand, within Psyr_4115at 4906.414 kb on - strand, within Psyr_4115at 4906.503 kb on - strand, within Psyr_4115at 4906.505 kb on + strand, within Psyr_4115at 4906.506 kb on - strand, within Psyr_4115at 4906.642 kb on + strand, within Psyr_4115at 4906.724 kb on - strandat 4907.163 kb on + strand, within Psyr_4116at 4907.164 kb on - strand, within Psyr_4116at 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.282 kb on + strandat 4907.283 kb on - strandat 4907.283 kb on - strandat 4907.283 kb on - strandat 4907.341 kb on + strandat 4907.508 kb on + strand, within Psyr_4117at 4907.508 kb on + strand, within Psyr_4117at 4907.508 kb on + strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.509 kb on - strand, within Psyr_4117at 4907.512 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.534 kb on + strand, within Psyr_4117at 4907.535 kb on - strand, within Psyr_4117at 4907.535 kb on - strand, within Psyr_4117at 4907.538 kb on + strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.539 kb on - strand, within Psyr_4117at 4907.596 kb on + strand, within Psyr_4117at 4907.596 kb on + strand, within Psyr_4117at 4907.597 kb on - strand, within Psyr_4117at 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.736 kb on + strandat 4907.737 kb on - strandat 4907.737 kb on - strandat 4907.754 kb on + strandat 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.861 kb on + strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.862 kb on - strand, within Psyr_4118at 4907.932 kb on + strand, within Psyr_4118at 4907.953 kb on + strand, within Psyr_4118at 4907.953 kb on + strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4907.954 kb on - strand, within Psyr_4118at 4908.126 kb on + strand, within Psyr_4118at 4908.188 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.212 kb on + strand, within Psyr_4118at 4908.213 kb on - strand, within Psyr_4118at 4908.213 kb on - strand, within Psyr_4118at 4908.262 kb on + strand, within Psyr_4118at 4908.263 kb on - strand, within Psyr_4118

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
remove
4,905,716 + Psyr_4114 0.33 +1.8
4,905,716 + Psyr_4114 0.33 +3.1
4,905,716 + Psyr_4114 0.33 +1.8
4,905,716 + Psyr_4114 0.33 +0.8
4,905,716 + Psyr_4114 0.33 -0.8
4,905,716 + Psyr_4114 0.33 -1.0
4,905,716 + Psyr_4114 0.33 +1.8
4,905,716 + Psyr_4114 0.33 +1.7
4,905,717 - Psyr_4114 0.34 -1.2
4,905,717 - Psyr_4114 0.34 -0.4
4,905,735 + Psyr_4114 0.38 -0.2
4,905,740 + Psyr_4114 0.40 +0.3
4,905,740 + Psyr_4114 0.40 +0.5
4,905,740 + Psyr_4114 0.40 +0.1
4,905,740 + Psyr_4114 0.40 +1.2
4,905,740 + Psyr_4114 0.40 +0.6
4,905,743 + Psyr_4114 0.41 -1.4
4,905,743 + Psyr_4114 0.41 -0.2
4,906,000 + +0.1
4,906,026 + +0.2
4,906,026 + +0.7
4,906,108 + -0.0
4,906,108 + +0.8
4,906,108 + +0.8
4,906,108 + +0.3
4,906,109 - +0.1
4,906,109 - -0.6
4,906,112 + -1.2
4,906,112 + -1.4
4,906,112 + -0.6
4,906,112 + +1.2
4,906,413 + Psyr_4115 0.48 +0.2
4,906,414 - Psyr_4115 0.49 -0.8
4,906,503 - Psyr_4115 0.64 +0.9
4,906,505 + Psyr_4115 0.64 +0.7
4,906,506 - Psyr_4115 0.64 +0.2
4,906,642 + Psyr_4115 0.87 -0.0
4,906,724 - +0.1
4,907,163 + Psyr_4116 0.77 -3.5
4,907,164 - Psyr_4116 0.78 -3.6
4,907,282 + +1.2
4,907,282 + -1.0
4,907,282 + +1.6
4,907,282 + -0.8
4,907,282 + +1.2
4,907,282 + +0.4
4,907,282 + +1.7
4,907,282 + -0.2
4,907,283 - -0.1
4,907,283 - -2.2
4,907,283 - -0.7
4,907,341 + +1.9
4,907,508 + Psyr_4117 0.37 +2.8
4,907,508 + Psyr_4117 0.37 -1.4
4,907,508 + Psyr_4117 0.37 -0.5
4,907,509 - Psyr_4117 0.37 -2.7
4,907,509 - Psyr_4117 0.37 -1.8
4,907,509 - Psyr_4117 0.37 +1.4
4,907,512 + Psyr_4117 0.38 +0.6
4,907,534 + Psyr_4117 0.43 -1.9
4,907,534 + Psyr_4117 0.43 -1.4
4,907,534 + Psyr_4117 0.43 -1.6
4,907,535 - Psyr_4117 0.43 +1.5
4,907,535 - Psyr_4117 0.43 +2.8
4,907,538 + Psyr_4117 0.44 -0.6
4,907,539 - Psyr_4117 0.44 -0.9
4,907,539 - Psyr_4117 0.44 +1.2
4,907,539 - Psyr_4117 0.44 +1.0
4,907,539 - Psyr_4117 0.44 -3.5
4,907,539 - Psyr_4117 0.44 -0.3
4,907,596 + Psyr_4117 0.58 +0.7
4,907,596 + Psyr_4117 0.58 -1.1
4,907,597 - Psyr_4117 0.58 -0.8
4,907,736 + +1.3
4,907,736 + +0.6
4,907,736 + -0.5
4,907,736 + -1.6
4,907,737 - +2.6
4,907,737 - +1.0
4,907,754 + +1.7
4,907,861 + Psyr_4118 0.11 -2.2
4,907,861 + Psyr_4118 0.11 -1.0
4,907,861 + Psyr_4118 0.11 -1.3
4,907,861 + Psyr_4118 0.11 -1.0
4,907,861 + Psyr_4118 0.11 -0.9
4,907,862 - Psyr_4118 0.11 -1.0
4,907,862 - Psyr_4118 0.11 -0.0
4,907,862 - Psyr_4118 0.11 -1.8
4,907,862 - Psyr_4118 0.11 +0.2
4,907,862 - Psyr_4118 0.11 +1.6
4,907,862 - Psyr_4118 0.11 -1.2
4,907,862 - Psyr_4118 0.11 +0.1
4,907,932 + Psyr_4118 0.23 -0.5
4,907,953 + Psyr_4118 0.26 -0.4
4,907,953 + Psyr_4118 0.26 -1.8
4,907,954 - Psyr_4118 0.26 -3.2
4,907,954 - Psyr_4118 0.26 -1.4
4,907,954 - Psyr_4118 0.26 -0.8
4,907,954 - Psyr_4118 0.26 +1.3
4,907,954 - Psyr_4118 0.26 -2.7
4,907,954 - Psyr_4118 0.26 -0.0
4,907,954 - Psyr_4118 0.26 -0.6
4,908,126 + Psyr_4118 0.54 +0.6
4,908,188 + Psyr_4118 0.64 +0.3
4,908,212 + Psyr_4118 0.68 -0.0
4,908,212 + Psyr_4118 0.68 -2.2
4,908,212 + Psyr_4118 0.68 +1.6
4,908,213 - Psyr_4118 0.68 +0.1
4,908,213 - Psyr_4118 0.68 +0.2
4,908,262 + Psyr_4118 0.76 +1.2
4,908,263 - Psyr_4118 0.76 -1.2

Or see this region's nucleotide sequence