Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3409

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
4,070,572	+		Psyr_3408	0.75	+0.1
4,070,572	+		Psyr_3408	0.75	+0.2
4,070,623	-		Psyr_3408	0.78	+0.0
4,070,643	+		Psyr_3408	0.78	-1.4
4,070,643	+		Psyr_3408	0.78	+0.1
4,070,643	+		Psyr_3408	0.78	+1.8
4,070,644	-		Psyr_3408	0.78	-2.5
4,070,644	-		Psyr_3408	0.78	+1.7
4,070,644	-		Psyr_3408	0.78	-1.4
4,070,644	-		Psyr_3408	0.78	+1.3
4,070,644	-		Psyr_3408	0.78	-0.3
4,070,644	-		Psyr_3408	0.78	-2.7
4,070,644	-		Psyr_3408	0.78	-2.9
4,070,644	-		Psyr_3408	0.78	-0.3
4,070,647	+		Psyr_3408	0.79	+1.8
4,070,647	+		Psyr_3408	0.79	-2.8
4,070,647	+		Psyr_3408	0.79	+0.8
4,070,648	-		Psyr_3408	0.79	-0.6
4,070,648	-		Psyr_3408	0.79	+2.1
4,070,708	+		Psyr_3408	0.82	+1.5
4,070,741	+		Psyr_3408	0.83	+1.0
4,070,742	-		Psyr_3408	0.83	+1.5
4,070,742	-		Psyr_3408	0.83	+0.6
4,070,883	-		Psyr_3408	0.90	-0.8
4,070,944	-				-0.1
4,070,973	-				+1.0
4,071,018	+				+1.8
4,071,025	+				+2.4
4,071,025	+				-1.4
4,071,026	-				-0.7
4,071,026	-				-0.9
4,071,026	-				-1.7
4,071,029	+				+1.3
4,071,030	-				-0.1
4,071,030	-				-0.5
4,071,055	+				-2.1
4,071,055	+				-0.8
4,071,055	+				-0.0
4,071,056	-				+2.9
4,071,056	-				-1.7
4,071,056	-				+1.5
4,071,056	-				-0.2
4,071,056	-				-0.1
4,071,056	-				+2.4
4,071,056	-				+0.5
4,071,149	-				-0.4
4,071,359	-				-0.5
4,071,574	+				+1.1
4,071,615	-				-0.9
4,071,616	+				-0.2
4,071,690	+				+1.0
4,071,724	+		Psyr_3409	0.11	+0.8
4,071,724	+		Psyr_3409	0.11	+0.6
4,071,764	-		Psyr_3409	0.13	-1.1
4,071,766	+		Psyr_3409	0.13	-1.8
4,071,767	-		Psyr_3409	0.14	+0.3
4,071,825	+		Psyr_3409	0.17	+1.6
4,071,882	-		Psyr_3409	0.20	+1.2
4,071,922	-		Psyr_3409	0.22	-2.4
4,071,922	-		Psyr_3409	0.22	+1.1
4,071,988	+		Psyr_3409	0.26	+3.6
4,071,988	+		Psyr_3409	0.26	-0.8
4,071,989	-		Psyr_3409	0.26	+2.7
4,071,989	-		Psyr_3409	0.26	-2.1
4,071,989	-		Psyr_3409	0.26	+0.1
4,072,048	-		Psyr_3409	0.29	+0.2
4,072,170	+		Psyr_3409	0.36	+0.3
4,072,170	+		Psyr_3409	0.36	-2.0
4,072,170	+		Psyr_3409	0.36	-2.0
4,072,171	-		Psyr_3409	0.36	-0.1
4,072,171	-		Psyr_3409	0.36	-0.3
4,072,171	-		Psyr_3409	0.36	-1.5
4,072,171	-		Psyr_3409	0.36	-1.0
4,072,171	-		Psyr_3409	0.36	+0.5
4,072,173	+		Psyr_3409	0.36	-3.4
4,072,173	+		Psyr_3409	0.36	-0.4
4,072,399	+		Psyr_3409	0.48	+2.4
4,072,412	+		Psyr_3409	0.49	-1.8
4,072,413	-		Psyr_3409	0.49	+0.4
4,072,413	-		Psyr_3409	0.49	+0.0
4,072,509	+		Psyr_3409	0.54	-2.0
4,072,510	-		Psyr_3409	0.54	+0.6
4,072,620	-		Psyr_3409	0.60	+1.9
4,072,756	+		Psyr_3409	0.68	-0.2
4,072,756	+		Psyr_3409	0.68	+1.3
4,072,756	+		Psyr_3409	0.68	-0.5
4,072,771	-		Psyr_3409	0.68	+0.5
4,072,832	+		Psyr_3409	0.72	+0.1
4,072,832	+		Psyr_3409	0.72	+2.1
4,072,833	-		Psyr_3409	0.72	+0.3
4,072,873	-		Psyr_3409	0.74	-0.8
4,072,875	+		Psyr_3409	0.74	-0.5
4,072,875	+		Psyr_3409	0.74	-1.4
4,072,876	-		Psyr_3409	0.74	+0.7
4,072,992	-		Psyr_3409	0.80	+0.2
4,073,065	-		Psyr_3409	0.84	+1.3
4,073,068	+		Psyr_3409	0.85	-1.8
4,073,068	+		Psyr_3409	0.85	-0.3
4,073,068	+		Psyr_3409	0.85	+1.7
4,073,069	-		Psyr_3409	0.85	+0.2
4,073,069	-		Psyr_3409	0.85	-1.6
4,073,069	-		Psyr_3409	0.85	+1.7
4,073,103	+		Psyr_3409	0.87	-1.6
4,073,103	+		Psyr_3409	0.87	+0.2
4,073,104	-		Psyr_3409	0.87	-0.3
4,073,104	-		Psyr_3409	0.87	+0.9
4,073,104	-		Psyr_3409	0.87	-0.6
4,073,104	-		Psyr_3409	0.87	-1.1
4,073,112	+		Psyr_3409	0.87	+0.5
4,073,113	-		Psyr_3409	0.87	+0.2
4,073,202	-				-2.0
4,073,222	-				-1.7
4,073,276	+				-3.3
4,073,370	+				-1.5
4,073,371	-				-0.5
4,073,450	+				+1.3
4,073,451	-				+1.3
4,073,451	-				-0.3
4,073,451	-				+1.1
4,073,451	-				+0.5
4,073,452	+				-0.1
4,073,481	+				+1.5
4,073,481	+				-3.5
4,073,481	+				+1.7
4,073,508	+				-0.8
4,073,509	-				-0.5
4,073,521	+				+0.5
4,073,522	-				+1.2
4,073,578	+				+0.7
4,073,588	+				+0.4
4,073,588	+				-0.7
4,073,588	+				+1.3
4,073,588	+				+1.3
4,073,589	-				+0.6
4,073,589	-				-1.5
4,073,589	-				-1.4
4,073,589	-				-1.5
4,073,636	+				+0.9
4,073,636	+				-0.4
4,073,636	+				-2.6
4,073,636	+				-1.3
4,073,637	-				-2.6
4,073,637	-				-1.2
4,073,637	-				-1.3
4,073,669	-		Psyr_3410	0.10	-1.3
4,073,681	+		Psyr_3410	0.11	+0.2
4,073,681	+		Psyr_3410	0.11	+2.2
4,073,681	+		Psyr_3410	0.11	+0.4
4,073,681	+		Psyr_3410	0.11	-0.3
4,073,681	+		Psyr_3410	0.11	+1.1
4,073,681	+		Psyr_3410	0.11	-1.1
4,073,681	+		Psyr_3410	0.11	-2.2
4,073,682	-		Psyr_3410	0.11	+2.1
4,073,682	-		Psyr_3410	0.11	+2.6
4,073,682	-		Psyr_3410	0.11	+2.5
4,073,682	-		Psyr_3410	0.11	+1.5
4,073,682	-		Psyr_3410	0.11	-1.1
4,073,682	-		Psyr_3410	0.11	-0.2
4,073,682	-		Psyr_3410	0.11	-3.5
4,073,687	+		Psyr_3410	0.11	+2.0
4,073,688	-		Psyr_3410	0.11	+1.5
4,073,688	-		Psyr_3410	0.11	-0.8
4,073,689	+		Psyr_3410	0.11	+1.4
4,073,689	+		Psyr_3410	0.11	-3.4
4,073,689	+		Psyr_3410	0.11	+3.2
4,073,690	-		Psyr_3410	0.11	+1.6
4,073,690	-		Psyr_3410	0.11	+0.2
4,073,690	-		Psyr_3410	0.11	-0.2
4,073,736	+		Psyr_3410	0.13	+0.0
4,073,737	-		Psyr_3410	0.13	-1.3
4,073,912	+		Psyr_3410	0.19	-1.9
4,073,912	+		Psyr_3410	0.19	-0.5
4,073,912	+		Psyr_3410	0.19	+2.8
4,073,913	-		Psyr_3410	0.20	+0.5
4,073,913	-		Psyr_3410	0.20	-3.0
4,073,913	-		Psyr_3410	0.20	+0.6
4,073,913	-		Psyr_3410	0.20	+1.0
4,073,966	-		Psyr_3410	0.22	-1.1
4,073,998	+		Psyr_3410	0.23	-0.4
4,073,999	-		Psyr_3410	0.23	-0.6
4,074,025	+		Psyr_3410	0.24	+0.5
4,074,026	-		Psyr_3410	0.24	-0.4
4,074,061	+		Psyr_3410	0.25	-1.7
4,074,061	+		Psyr_3410	0.25	+0.4
4,074,062	-		Psyr_3410	0.25	-3.1
4,074,089	+		Psyr_3410	0.26	-0.5
4,074,089	+		Psyr_3410	0.26	-1.8
4,074,089	+		Psyr_3410	0.26	-1.3
4,074,089	+		Psyr_3410	0.26	-0.8
4,074,089	+		Psyr_3410	0.26	+0.1
4,074,090	-		Psyr_3410	0.26	-1.7
4,074,237	+		Psyr_3410	0.32	+0.5
4,074,237	+		Psyr_3410	0.32	-0.2
4,074,237	+		Psyr_3410	0.32	-0.6
4,074,256	+		Psyr_3410	0.33	+1.8
4,074,257	-		Psyr_3410	0.33	-3.0
4,074,312	+		Psyr_3410	0.35	+1.0
4,074,312	+		Psyr_3410	0.35	+0.7
4,074,312	+		Psyr_3410	0.35	+1.3
4,074,313	-		Psyr_3410	0.35	-0.7