Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2611 and Psyr_2612 are separated by 331 nucleotides Psyr_2612 and Psyr_2613 are separated by 80 nucleotides
Psyr_2611: Psyr_2611 - Amino acid adenylation, at 3,093,701 to 3,095,545
_2611
Psyr_2612: Psyr_2612 - syrP protein, putative, at 3,095,877 to 3,096,938
_2612
Psyr_2613: Psyr_2613 - Cyclic peptide transporter, at 3,097,019 to 3,098,719
_2613
Position (kb)
3095
3096
3097 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3095.040 kb on + strand, within Psyr_2611 at 3095.040 kb on + strand, within Psyr_2611 at 3095.041 kb on - strand, within Psyr_2611 at 3095.049 kb on + strand, within Psyr_2611 at 3095.049 kb on + strand, within Psyr_2611 at 3095.050 kb on - strand, within Psyr_2611 at 3095.050 kb on - strand, within Psyr_2611 at 3095.050 kb on - strand, within Psyr_2611 at 3095.062 kb on + strand, within Psyr_2611 at 3095.063 kb on - strand, within Psyr_2611 at 3095.118 kb on - strand, within Psyr_2611 at 3095.253 kb on + strand, within Psyr_2611 at 3095.253 kb on + strand, within Psyr_2611 at 3095.253 kb on + strand, within Psyr_2611 at 3095.254 kb on - strand, within Psyr_2611 at 3095.254 kb on - strand, within Psyr_2611 at 3095.254 kb on - strand, within Psyr_2611 at 3095.254 kb on - strand, within Psyr_2611 at 3095.316 kb on + strand, within Psyr_2611 at 3095.316 kb on + strand, within Psyr_2611 at 3095.316 kb on + strand, within Psyr_2611 at 3095.562 kb on + strand at 3095.563 kb on - strand at 3095.726 kb on + strand at 3095.892 kb on - strand at 3096.264 kb on + strand, within Psyr_2612 at 3096.430 kb on - strand, within Psyr_2612 at 3096.723 kb on + strand, within Psyr_2612 at 3096.724 kb on - strand, within Psyr_2612 at 3097.390 kb on + strand, within Psyr_2613 at 3097.538 kb on + strand, within Psyr_2613 at 3097.538 kb on + strand, within Psyr_2613 at 3097.538 kb on + strand, within Psyr_2613 at 3097.718 kb on + strand, within Psyr_2613 at 3097.724 kb on + strand, within Psyr_2613 at 3097.724 kb on + strand, within Psyr_2613 at 3097.725 kb on - strand, within Psyr_2613 at 3097.725 kb on - strand, within Psyr_2613 at 3097.868 kb on + strand, within Psyr_2613 at 3097.868 kb on + strand, within Psyr_2613 at 3097.869 kb on - strand, within Psyr_2613 at 3097.869 kb on - strand, within Psyr_2613 at 3097.927 kb on + strand, within Psyr_2613 at 3097.928 kb on - strand, within Psyr_2613
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 3,095,040 + Psyr_2611 0.73 -1.0 3,095,040 + Psyr_2611 0.73 -1.8 3,095,041 - Psyr_2611 0.73 +0.0 3,095,049 + Psyr_2611 0.73 -2.8 3,095,049 + Psyr_2611 0.73 +1.7 3,095,050 - Psyr_2611 0.73 +2.0 3,095,050 - Psyr_2611 0.73 -0.4 3,095,050 - Psyr_2611 0.73 -1.3 3,095,062 + Psyr_2611 0.74 +1.0 3,095,063 - Psyr_2611 0.74 -0.7 3,095,118 - Psyr_2611 0.77 -1.2 3,095,253 + Psyr_2611 0.84 +1.0 3,095,253 + Psyr_2611 0.84 -0.8 3,095,253 + Psyr_2611 0.84 -2.1 3,095,254 - Psyr_2611 0.84 +0.6 3,095,254 - Psyr_2611 0.84 -2.0 3,095,254 - Psyr_2611 0.84 +0.6 3,095,254 - Psyr_2611 0.84 +1.7 3,095,316 + Psyr_2611 0.88 -0.1 3,095,316 + Psyr_2611 0.88 -1.2 3,095,316 + Psyr_2611 0.88 -1.0 3,095,562 + +1.1 3,095,563 - -1.7 3,095,726 + +0.6 3,095,892 - -0.5 3,096,264 + Psyr_2612 0.36 -1.3 3,096,430 - Psyr_2612 0.52 -1.8 3,096,723 + Psyr_2612 0.80 -0.1 3,096,724 - Psyr_2612 0.80 +0.3 3,097,390 + Psyr_2613 0.22 -0.7 3,097,538 + Psyr_2613 0.31 -2.1 3,097,538 + Psyr_2613 0.31 -1.7 3,097,538 + Psyr_2613 0.31 -0.1 3,097,718 + Psyr_2613 0.41 -1.4 3,097,724 + Psyr_2613 0.41 -2.1 3,097,724 + Psyr_2613 0.41 -0.3 3,097,725 - Psyr_2613 0.42 -0.5 3,097,725 - Psyr_2613 0.42 -3.0 3,097,868 + Psyr_2613 0.50 -2.6 3,097,868 + Psyr_2613 0.50 -2.7 3,097,869 - Psyr_2613 0.50 -0.3 3,097,869 - Psyr_2613 0.50 -1.8 3,097,927 + Psyr_2613 0.53 -1.7 3,097,928 - Psyr_2613 0.53 -3.7
Or see this region's nucleotide sequence