Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2612

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2611 and Psyr_2612 are separated by 331 nucleotidesPsyr_2612 and Psyr_2613 are separated by 80 nucleotides Psyr_2611: Psyr_2611 - Amino acid adenylation, at 3,093,701 to 3,095,545 _2611 Psyr_2612: Psyr_2612 - syrP protein, putative, at 3,095,877 to 3,096,938 _2612 Psyr_2613: Psyr_2613 - Cyclic peptide transporter, at 3,097,019 to 3,098,719 _2613 Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3095.040 kb on + strand, within Psyr_2611at 3095.040 kb on + strand, within Psyr_2611at 3095.041 kb on - strand, within Psyr_2611at 3095.049 kb on + strand, within Psyr_2611at 3095.049 kb on + strand, within Psyr_2611at 3095.050 kb on - strand, within Psyr_2611at 3095.050 kb on - strand, within Psyr_2611at 3095.050 kb on - strand, within Psyr_2611at 3095.062 kb on + strand, within Psyr_2611at 3095.063 kb on - strand, within Psyr_2611at 3095.118 kb on - strand, within Psyr_2611at 3095.253 kb on + strand, within Psyr_2611at 3095.253 kb on + strand, within Psyr_2611at 3095.253 kb on + strand, within Psyr_2611at 3095.254 kb on - strand, within Psyr_2611at 3095.254 kb on - strand, within Psyr_2611at 3095.254 kb on - strand, within Psyr_2611at 3095.254 kb on - strand, within Psyr_2611at 3095.316 kb on + strand, within Psyr_2611at 3095.316 kb on + strand, within Psyr_2611at 3095.316 kb on + strand, within Psyr_2611at 3095.562 kb on + strandat 3095.563 kb on - strandat 3095.726 kb on + strandat 3095.892 kb on - strandat 3096.264 kb on + strand, within Psyr_2612at 3096.430 kb on - strand, within Psyr_2612at 3096.723 kb on + strand, within Psyr_2612at 3096.724 kb on - strand, within Psyr_2612at 3097.390 kb on + strand, within Psyr_2613at 3097.538 kb on + strand, within Psyr_2613at 3097.538 kb on + strand, within Psyr_2613at 3097.538 kb on + strand, within Psyr_2613at 3097.718 kb on + strand, within Psyr_2613at 3097.724 kb on + strand, within Psyr_2613at 3097.724 kb on + strand, within Psyr_2613at 3097.725 kb on - strand, within Psyr_2613at 3097.725 kb on - strand, within Psyr_2613at 3097.868 kb on + strand, within Psyr_2613at 3097.868 kb on + strand, within Psyr_2613at 3097.869 kb on - strand, within Psyr_2613at 3097.869 kb on - strand, within Psyr_2613at 3097.927 kb on + strand, within Psyr_2613at 3097.928 kb on - strand, within Psyr_2613

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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3,095,040 + Psyr_2611 0.73 -1.0
3,095,040 + Psyr_2611 0.73 -1.8
3,095,041 - Psyr_2611 0.73 +0.0
3,095,049 + Psyr_2611 0.73 -2.8
3,095,049 + Psyr_2611 0.73 +1.7
3,095,050 - Psyr_2611 0.73 +2.0
3,095,050 - Psyr_2611 0.73 -0.4
3,095,050 - Psyr_2611 0.73 -1.3
3,095,062 + Psyr_2611 0.74 +1.0
3,095,063 - Psyr_2611 0.74 -0.7
3,095,118 - Psyr_2611 0.77 -1.2
3,095,253 + Psyr_2611 0.84 +1.0
3,095,253 + Psyr_2611 0.84 -0.8
3,095,253 + Psyr_2611 0.84 -2.1
3,095,254 - Psyr_2611 0.84 +0.6
3,095,254 - Psyr_2611 0.84 -2.0
3,095,254 - Psyr_2611 0.84 +0.6
3,095,254 - Psyr_2611 0.84 +1.7
3,095,316 + Psyr_2611 0.88 -0.1
3,095,316 + Psyr_2611 0.88 -1.2
3,095,316 + Psyr_2611 0.88 -1.0
3,095,562 + +1.1
3,095,563 - -1.7
3,095,726 + +0.6
3,095,892 - -0.5
3,096,264 + Psyr_2612 0.36 -1.3
3,096,430 - Psyr_2612 0.52 -1.8
3,096,723 + Psyr_2612 0.80 -0.1
3,096,724 - Psyr_2612 0.80 +0.3
3,097,390 + Psyr_2613 0.22 -0.7
3,097,538 + Psyr_2613 0.31 -2.1
3,097,538 + Psyr_2613 0.31 -1.7
3,097,538 + Psyr_2613 0.31 -0.1
3,097,718 + Psyr_2613 0.41 -1.4
3,097,724 + Psyr_2613 0.41 -2.1
3,097,724 + Psyr_2613 0.41 -0.3
3,097,725 - Psyr_2613 0.42 -0.5
3,097,725 - Psyr_2613 0.42 -3.0
3,097,868 + Psyr_2613 0.50 -2.6
3,097,868 + Psyr_2613 0.50 -2.7
3,097,869 - Psyr_2613 0.50 -0.3
3,097,869 - Psyr_2613 0.50 -1.8
3,097,927 + Psyr_2613 0.53 -1.7
3,097,928 - Psyr_2613 0.53 -3.7

Or see this region's nucleotide sequence