Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2402 and Psyr_2403 are separated by 94 nucleotides Psyr_2403 and Psyr_2404 are separated by 32 nucleotides Psyr_2404 and Psyr_2405 are separated by 1 nucleotides Psyr_2405 and Psyr_2406 are separated by 175 nucleotides Psyr_2406 and Psyr_2407 are separated by 13 nucleotides
Psyr_2402: Psyr_2402 - 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II, at 2,784,425 to 2,785,534
_2402
Psyr_2403: Psyr_2403 - Protein of unknown function DUF1330, at 2,785,629 to 2,785,919
_2403
Psyr_2404: Psyr_2404 - NUDIX hydrolase, at 2,785,952 to 2,786,515
_2404
Psyr_2405: Psyr_2405 - transcriptional regulator, GntR family, at 2,786,517 to 2,787,269
_2405
Psyr_2406: Psyr_2406 - Flavin reductase-like protein, at 2,787,445 to 2,787,930
_2406
Psyr_2407: Psyr_2407 - aldehyde dehydrogenase (acceptor), at 2,787,944 to 2,789,425
_2407
Position (kb)
2786
2787
2788 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2785.638 kb on + strand at 2785.638 kb on + strand at 2785.677 kb on + strand, within Psyr_2403 at 2785.677 kb on + strand, within Psyr_2403 at 2785.677 kb on + strand, within Psyr_2403 at 2785.678 kb on - strand, within Psyr_2403 at 2785.678 kb on - strand, within Psyr_2403 at 2785.686 kb on + strand, within Psyr_2403 at 2785.687 kb on - strand, within Psyr_2403 at 2785.833 kb on + strand, within Psyr_2403 at 2785.834 kb on - strand, within Psyr_2403 at 2785.995 kb on + strand at 2785.995 kb on + strand at 2785.995 kb on + strand at 2785.995 kb on + strand at 2785.995 kb on + strand at 2785.996 kb on - strand at 2785.996 kb on - strand at 2785.996 kb on - strand at 2786.000 kb on - strand at 2786.005 kb on - strand at 2786.031 kb on + strand, within Psyr_2404 at 2786.031 kb on + strand, within Psyr_2404 at 2786.031 kb on + strand, within Psyr_2404 at 2786.032 kb on - strand, within Psyr_2404 at 2786.042 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.064 kb on + strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.065 kb on - strand, within Psyr_2404 at 2786.169 kb on + strand, within Psyr_2404 at 2786.169 kb on + strand, within Psyr_2404 at 2786.169 kb on + strand, within Psyr_2404 at 2786.170 kb on - strand, within Psyr_2404 at 2786.170 kb on - strand, within Psyr_2404 at 2786.170 kb on - strand, within Psyr_2404 at 2786.205 kb on + strand, within Psyr_2404 at 2786.228 kb on + strand, within Psyr_2404 at 2786.228 kb on + strand, within Psyr_2404 at 2786.352 kb on + strand, within Psyr_2404 at 2786.352 kb on + strand, within Psyr_2404 at 2786.352 kb on + strand, within Psyr_2404 at 2786.352 kb on + strand, within Psyr_2404 at 2786.353 kb on - strand, within Psyr_2404 at 2786.353 kb on - strand, within Psyr_2404 at 2786.353 kb on - strand, within Psyr_2404 at 2786.353 kb on - strand, within Psyr_2404 at 2786.369 kb on + strand, within Psyr_2404 at 2786.403 kb on + strand, within Psyr_2404 at 2786.404 kb on - strand, within Psyr_2404 at 2786.412 kb on + strand, within Psyr_2404 at 2786.413 kb on - strand, within Psyr_2404 at 2786.413 kb on - strand, within Psyr_2404 at 2786.413 kb on - strand, within Psyr_2404 at 2786.526 kb on + strand at 2786.526 kb on + strand at 2786.527 kb on - strand at 2786.527 kb on - strand at 2786.527 kb on - strand at 2786.527 kb on - strand at 2786.603 kb on - strand, within Psyr_2405 at 2786.631 kb on + strand, within Psyr_2405 at 2786.631 kb on + strand, within Psyr_2405 at 2786.632 kb on - strand, within Psyr_2405 at 2786.632 kb on - strand, within Psyr_2405 at 2786.758 kb on + strand, within Psyr_2405 at 2786.758 kb on + strand, within Psyr_2405 at 2786.826 kb on + strand, within Psyr_2405 at 2786.826 kb on + strand, within Psyr_2405 at 2786.826 kb on + strand, within Psyr_2405 at 2786.826 kb on + strand, within Psyr_2405 at 2786.826 kb on + strand, within Psyr_2405 at 2786.827 kb on - strand, within Psyr_2405 at 2786.827 kb on - strand, within Psyr_2405 at 2786.827 kb on - strand, within Psyr_2405 at 2786.827 kb on - strand, within Psyr_2405 at 2786.827 kb on - strand, within Psyr_2405 at 2786.833 kb on + strand, within Psyr_2405 at 2786.833 kb on + strand, within Psyr_2405 at 2786.985 kb on + strand, within Psyr_2405 at 2786.986 kb on - strand, within Psyr_2405 at 2786.986 kb on - strand, within Psyr_2405 at 2787.317 kb on + strand at 2787.485 kb on + strand at 2787.686 kb on + strand, within Psyr_2406 at 2787.771 kb on - strand, within Psyr_2406 at 2787.771 kb on - strand, within Psyr_2406 at 2787.771 kb on - strand, within Psyr_2406 at 2787.832 kb on - strand, within Psyr_2406 at 2787.911 kb on + strand at 2787.912 kb on - strand at 2787.912 kb on - strand at 2787.925 kb on + strand at 2787.925 kb on + strand at 2787.925 kb on + strand at 2787.925 kb on + strand at 2787.926 kb on - strand at 2787.926 kb on - strand at 2787.926 kb on - strand at 2787.926 kb on - strand at 2788.105 kb on + strand, within Psyr_2407 at 2788.106 kb on - strand, within Psyr_2407 at 2788.106 kb on - strand, within Psyr_2407 at 2788.106 kb on - strand, within Psyr_2407 at 2788.106 kb on - strand, within Psyr_2407 at 2788.106 kb on - strand, within Psyr_2407 at 2788.120 kb on + strand, within Psyr_2407 at 2788.120 kb on + strand, within Psyr_2407 at 2788.120 kb on + strand, within Psyr_2407 at 2788.120 kb on + strand, within Psyr_2407 at 2788.121 kb on - strand, within Psyr_2407
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 2,785,638 + +0.4 2,785,638 + +2.9 2,785,677 + Psyr_2403 0.16 -0.4 2,785,677 + Psyr_2403 0.16 -2.4 2,785,677 + Psyr_2403 0.16 -0.1 2,785,678 - Psyr_2403 0.17 +0.3 2,785,678 - Psyr_2403 0.17 +1.6 2,785,686 + Psyr_2403 0.20 +0.5 2,785,687 - Psyr_2403 0.20 -1.5 2,785,833 + Psyr_2403 0.70 -0.1 2,785,834 - Psyr_2403 0.70 +0.3 2,785,995 + -0.3 2,785,995 + -1.1 2,785,995 + -2.5 2,785,995 + +0.7 2,785,995 + -0.6 2,785,996 - +0.1 2,785,996 - -1.3 2,785,996 - -0.3 2,786,000 - +0.3 2,786,005 - -0.4 2,786,031 + Psyr_2404 0.14 +0.5 2,786,031 + Psyr_2404 0.14 +4.3 2,786,031 + Psyr_2404 0.14 -0.8 2,786,032 - Psyr_2404 0.14 +1.0 2,786,042 + Psyr_2404 0.16 +3.0 2,786,064 + Psyr_2404 0.20 +0.3 2,786,064 + Psyr_2404 0.20 +2.3 2,786,064 + Psyr_2404 0.20 +2.1 2,786,064 + Psyr_2404 0.20 +0.5 2,786,064 + Psyr_2404 0.20 +0.8 2,786,064 + Psyr_2404 0.20 +0.6 2,786,064 + Psyr_2404 0.20 +0.7 2,786,064 + Psyr_2404 0.20 -1.3 2,786,064 + Psyr_2404 0.20 -2.1 2,786,064 + Psyr_2404 0.20 +1.6 2,786,065 - Psyr_2404 0.20 -1.8 2,786,065 - Psyr_2404 0.20 +1.3 2,786,065 - Psyr_2404 0.20 +0.6 2,786,065 - Psyr_2404 0.20 -2.5 2,786,065 - Psyr_2404 0.20 +1.0 2,786,065 - Psyr_2404 0.20 +1.3 2,786,065 - Psyr_2404 0.20 -0.5 2,786,065 - Psyr_2404 0.20 -0.7 2,786,169 + Psyr_2404 0.38 +2.0 2,786,169 + Psyr_2404 0.38 +0.3 2,786,169 + Psyr_2404 0.38 -1.8 2,786,170 - Psyr_2404 0.39 -2.4 2,786,170 - Psyr_2404 0.39 +1.8 2,786,170 - Psyr_2404 0.39 -1.6 2,786,205 + Psyr_2404 0.45 -0.1 2,786,228 + Psyr_2404 0.49 +2.8 2,786,228 + Psyr_2404 0.49 -0.5 2,786,352 + Psyr_2404 0.71 -0.1 2,786,352 + Psyr_2404 0.71 -0.0 2,786,352 + Psyr_2404 0.71 +0.0 2,786,352 + Psyr_2404 0.71 -1.3 2,786,353 - Psyr_2404 0.71 +0.0 2,786,353 - Psyr_2404 0.71 +2.1 2,786,353 - Psyr_2404 0.71 -0.3 2,786,353 - Psyr_2404 0.71 +1.3 2,786,369 + Psyr_2404 0.74 +1.2 2,786,403 + Psyr_2404 0.80 +1.9 2,786,404 - Psyr_2404 0.80 -2.6 2,786,412 + Psyr_2404 0.82 +1.3 2,786,413 - Psyr_2404 0.82 -1.7 2,786,413 - Psyr_2404 0.82 -0.7 2,786,413 - Psyr_2404 0.82 -0.5 2,786,526 + -1.4 2,786,526 + -1.0 2,786,527 - -1.0 2,786,527 - -1.8 2,786,527 - +1.6 2,786,527 - -0.1 2,786,603 - Psyr_2405 0.11 -0.7 2,786,631 + Psyr_2405 0.15 +1.0 2,786,631 + Psyr_2405 0.15 +1.7 2,786,632 - Psyr_2405 0.15 +0.2 2,786,632 - Psyr_2405 0.15 -1.8 2,786,758 + Psyr_2405 0.32 -1.7 2,786,758 + Psyr_2405 0.32 -0.4 2,786,826 + Psyr_2405 0.41 +0.5 2,786,826 + Psyr_2405 0.41 -2.4 2,786,826 + Psyr_2405 0.41 +2.0 2,786,826 + Psyr_2405 0.41 -1.2 2,786,826 + Psyr_2405 0.41 -2.8 2,786,827 - Psyr_2405 0.41 -0.7 2,786,827 - Psyr_2405 0.41 +2.7 2,786,827 - Psyr_2405 0.41 -0.5 2,786,827 - Psyr_2405 0.41 +1.3 2,786,827 - Psyr_2405 0.41 +2.1 2,786,833 + Psyr_2405 0.42 -1.5 2,786,833 + Psyr_2405 0.42 -1.1 2,786,985 + Psyr_2405 0.62 -1.0 2,786,986 - Psyr_2405 0.62 -1.6 2,786,986 - Psyr_2405 0.62 -1.3 2,787,317 + +0.5 2,787,485 + +0.7 2,787,686 + Psyr_2406 0.50 -2.0 2,787,771 - Psyr_2406 0.67 +0.0 2,787,771 - Psyr_2406 0.67 +1.7 2,787,771 - Psyr_2406 0.67 -0.7 2,787,832 - Psyr_2406 0.80 +1.1 2,787,911 + -0.3 2,787,912 - +1.3 2,787,912 - -0.7 2,787,925 + +1.1 2,787,925 + +0.1 2,787,925 + -1.3 2,787,925 + -0.5 2,787,926 - +4.6 2,787,926 - +0.4 2,787,926 - -2.0 2,787,926 - -0.7 2,788,105 + Psyr_2407 0.11 -1.8 2,788,106 - Psyr_2407 0.11 -1.0 2,788,106 - Psyr_2407 0.11 -0.3 2,788,106 - Psyr_2407 0.11 +1.9 2,788,106 - Psyr_2407 0.11 +1.4 2,788,106 - Psyr_2407 0.11 -1.0 2,788,120 + Psyr_2407 0.12 -0.4 2,788,120 + Psyr_2407 0.12 -0.7 2,788,120 + Psyr_2407 0.12 +0.4 2,788,120 + Psyr_2407 0.12 +0.0 2,788,121 - Psyr_2407 0.12 +0.5
Or see this region's nucleotide sequence