Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1487

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,674,291	+		Psyr_1486	0.47	-0.8
1,674,292	-		Psyr_1486	0.47	-1.1
1,674,379	+		Psyr_1486	0.54	+0.4
1,674,379	+		Psyr_1486	0.54	+0.8
1,674,379	+		Psyr_1486	0.54	-3.1
1,674,379	+		Psyr_1486	0.54	-0.3
1,674,379	+		Psyr_1486	0.54	-2.8
1,674,379	+		Psyr_1486	0.54	+0.5
1,674,379	+		Psyr_1486	0.54	+1.9
1,674,379	+		Psyr_1486	0.54	-1.8
1,674,379	+		Psyr_1486	0.54	+0.1
1,674,380	-		Psyr_1486	0.54	+0.6
1,674,380	-		Psyr_1486	0.54	+4.1
1,674,380	-		Psyr_1486	0.54	+0.9
1,674,380	-		Psyr_1486	0.54	-2.7
1,674,380	-		Psyr_1486	0.54	-2.3
1,674,380	-		Psyr_1486	0.54	+0.7
1,674,460	+		Psyr_1486	0.60	-1.3
1,674,467	+		Psyr_1486	0.60	-0.2
1,674,467	+		Psyr_1486	0.60	-1.0
1,674,468	-		Psyr_1486	0.60	+0.2
1,674,468	-		Psyr_1486	0.60	-0.7
1,674,468	-		Psyr_1486	0.60	-2.7
1,674,468	-		Psyr_1486	0.60	-2.2
1,674,468	-		Psyr_1486	0.60	-3.6
1,674,468	-		Psyr_1486	0.60	+2.3
1,674,468	-		Psyr_1486	0.60	+2.6
1,674,468	-		Psyr_1486	0.60	+0.1
1,674,468	-		Psyr_1486	0.60	+1.8
1,674,468	-		Psyr_1486	0.60	-0.9
1,674,483	+		Psyr_1486	0.61	-0.1
1,674,483	+		Psyr_1486	0.61	-1.5
1,674,483	+		Psyr_1486	0.61	+0.9
1,674,483	+		Psyr_1486	0.61	+1.5
1,674,483	+		Psyr_1486	0.61	-0.3
1,674,484	-		Psyr_1486	0.62	-3.2
1,674,484	-		Psyr_1486	0.62	-0.8
1,674,484	-		Psyr_1486	0.62	-2.7
1,674,499	-		Psyr_1486	0.63	-3.4
1,674,731	+		Psyr_1486	0.80	-0.5
1,674,731	+		Psyr_1486	0.80	-0.2
1,674,732	-		Psyr_1486	0.80	+1.7
1,674,786	+		Psyr_1486	0.84	-0.8
1,674,796	+		Psyr_1486	0.85	+0.6
1,674,796	+		Psyr_1486	0.85	+0.8
1,674,796	+		Psyr_1486	0.85	+0.7
1,674,924	+				-2.4
1,674,924	+				+0.8
1,674,925	-				-0.6
1,674,954	+				-1.2
1,674,955	-				-0.8
1,674,955	-				-0.1
1,674,956	+				-1.3
1,674,956	+				-0.0
1,674,957	-				+1.2
1,674,957	-				-1.5
1,674,957	-				-1.4
1,674,957	-				-1.1
1,674,957	-				+0.8
1,674,957	-				+1.6
1,674,957	-				-0.0
1,674,958	+				+2.6
1,674,958	+				-0.9
1,674,958	+				+0.5
1,674,958	+				+1.9
1,674,959	-				-0.1
1,674,959	-				+1.5
1,674,959	-				-0.3
1,674,959	-				+0.3
1,674,959	-				-0.9
1,674,959	-				-1.3
1,674,959	-				-1.8
1,674,959	-				+1.9
1,674,959	-				-2.8
1,674,959	-				-2.0
1,674,959	-				-1.3
1,674,959	-				+3.1
1,674,959	-				+0.6
1,674,959	-				-0.5
1,674,959	-				+0.4
1,674,959	-				+0.4
1,674,966	+				-1.6
1,674,966	+				+2.4
1,674,966	+				-2.1
1,674,966	+				+0.8
1,674,967	-				-2.3
1,674,996	-				+0.1
1,675,020	+				+1.5
1,675,048	+				+0.9
1,675,048	+				-1.1
1,675,049	-				+0.7
1,675,126	-				-1.1
1,675,159	+				-2.8
1,675,159	+				+1.4
1,675,160	-				-1.2
1,675,160	-				-0.1
1,675,160	-				-1.3
1,675,163	+				+0.1
1,675,164	-				+0.7
1,675,164	-				+0.2
1,675,164	-				+1.8
1,675,164	-				-0.2
1,675,164	-				+0.4
1,675,181	-				-0.8
1,675,251	+				-1.7
1,675,251	+				+0.2
1,675,251	+				+2.2
1,675,251	+				+0.2
1,675,251	+				+1.1
1,675,251	+				-1.1
1,675,251	+				-1.8
1,675,251	+				-1.3
1,675,251	+				+1.0
1,675,252	-				+1.3
1,675,252	-				-1.7
1,675,252	-				+0.3
1,675,252	-				-2.9
1,675,252	-				-0.7
1,675,252	-				+2.4
1,675,252	-				-0.7
1,675,252	-				-0.0
1,675,296	-		Psyr_1487	0.14	-2.6
1,675,312	+		Psyr_1487	0.19	-2.9
1,675,312	+		Psyr_1487	0.19	-1.2
1,675,313	-		Psyr_1487	0.19	-0.6
1,675,337	+		Psyr_1487	0.27	-2.9
1,675,338	-		Psyr_1487	0.27	-2.7
1,675,547	-				-2.8
1,675,599	+				+0.6
1,675,599	+				-0.3
1,675,600	-				-1.1
1,675,600	-				+1.5
1,675,600	-				-2.4
1,675,607	-				+0.3
1,675,653	+				+0.3
1,675,654	-				-0.3
1,675,654	-				+1.1
1,675,701	+		Psyr_1488	0.16	+0.7
1,675,798	-		Psyr_1488	0.29	-0.5
1,675,850	+		Psyr_1488	0.36	+1.8
1,675,850	+		Psyr_1488	0.36	-1.7
1,675,850	+		Psyr_1488	0.36	-1.6
1,675,850	+		Psyr_1488	0.36	+1.2
1,675,851	-		Psyr_1488	0.36	-1.1
1,675,851	-		Psyr_1488	0.36	-2.0
1,675,851	-		Psyr_1488	0.36	-2.4
1,675,851	-		Psyr_1488	0.36	-1.7
1,675,894	+		Psyr_1488	0.42	-1.6
1,675,894	+		Psyr_1488	0.42	+0.8
1,675,894	+		Psyr_1488	0.42	+0.2
1,675,895	-		Psyr_1488	0.42	+1.3
1,675,895	-		Psyr_1488	0.42	-0.9
1,675,895	-		Psyr_1488	0.42	-0.5
1,675,895	-		Psyr_1488	0.42	-0.1
1,675,908	+		Psyr_1488	0.44	+2.6
1,675,908	+		Psyr_1488	0.44	-1.0
1,675,909	-		Psyr_1488	0.44	+0.5
1,675,909	-		Psyr_1488	0.44	+1.2
1,675,909	-		Psyr_1488	0.44	-0.0
1,675,909	-		Psyr_1488	0.44	-0.6
1,675,909	-		Psyr_1488	0.44	+1.4
1,675,993	+		Psyr_1488	0.55	-0.6
1,675,993	+		Psyr_1488	0.55	-2.4
1,675,993	+		Psyr_1488	0.55	+1.7
1,675,993	+		Psyr_1488	0.55	-1.6
1,675,993	+		Psyr_1488	0.55	-2.1
1,675,994	-		Psyr_1488	0.55	+0.7
1,675,994	-		Psyr_1488	0.55	+1.7
1,675,994	-		Psyr_1488	0.55	-0.7
1,675,994	-		Psyr_1488	0.55	-0.4
1,675,994	-		Psyr_1488	0.55	-2.9
1,675,994	-		Psyr_1488	0.55	+0.3
1,676,000	+		Psyr_1488	0.56	+1.7
1,676,001	-		Psyr_1488	0.56	-1.5
1,676,001	-		Psyr_1488	0.56	-2.7
1,676,132	+		Psyr_1488	0.74	-2.0
1,676,133	-		Psyr_1488	0.74	+0.8
1,676,133	-		Psyr_1488	0.74	-1.2
1,676,185	+		Psyr_1488	0.81	-2.3
1,676,185	+		Psyr_1488	0.81	+0.1
1,676,185	+		Psyr_1488	0.81	-1.4
1,676,185	+		Psyr_1488	0.81	-2.2
1,676,185	+		Psyr_1488	0.81	-0.8
1,676,185	+		Psyr_1488	0.81	-1.3
1,676,185	+		Psyr_1488	0.81	-0.0
1,676,186	-		Psyr_1488	0.81	-2.0
1,676,186	-		Psyr_1488	0.81	+0.1
1,676,186	-		Psyr_1488	0.81	-1.5
1,676,186	-		Psyr_1488	0.81	+1.5
1,676,186	-		Psyr_1488	0.81	-0.1
1,676,287	+				-0.8
1,676,287	+				+1.4
1,676,287	+				-0.3
1,676,287	+				+1.2
1,676,287	+				+0.5
1,676,288	-				-0.1
1,676,288	-				-0.8
1,676,288	-				-2.0
1,676,311	-				-0.0
1,676,311	-				-2.7
1,676,371	+				+0.7
1,676,374	+				-0.2
1,676,374	+				+0.2
1,676,374	+				-1.9
1,676,375	-				+0.8
1,676,380	+				-0.8
1,676,381	-				-0.2
1,676,387	+				-0.3
1,676,476	+				-0.5
1,676,480	-				-2.8
1,676,489	+				+0.5
1,676,490	-				-1.3
1,676,498	+				-0.2
1,676,498	+				-0.6
1,676,499	-				+1.2
1,676,536	+				-0.4
1,676,536	+				+0.2
1,676,536	+				+2.4
1,676,536	+				-0.4
1,676,536	+				+1.6
1,676,536	+				-0.9
1,676,536	+				-3.0
1,676,536	+				-1.7
1,676,537	-				-1.1
1,676,537	-				-1.8
1,676,537	-				+1.2
1,676,537	-				-0.5
1,676,538	+				+0.2