Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1426

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,613,953	+		Psyr_1425	0.80	+1.0
1,614,004	-		Psyr_1425	0.84	+3.0
1,614,075	+		Psyr_1425	0.90	+1.4
1,614,099	-				-1.2
1,614,099	-				-1.2
1,614,135	+				+1.6
1,614,163	+				-3.1
1,614,165	+				-1.9
1,614,165	+				+0.7
1,614,165	+				+1.8
1,614,166	-				-1.3
1,614,166	-				+0.2
1,614,216	+				+3.4
1,614,217	-				-0.5
1,614,240	+				-0.3
1,614,240	+				+0.7
1,614,241	-				+1.4
1,614,241	-				+1.3
1,614,241	-				+0.5
1,614,241	-				+0.3
1,614,245	+				-1.1
1,614,246	-				-0.6
1,614,246	-				-1.5
1,614,246	-				-0.2
1,614,303	+				-1.7
1,614,345	-				+0.1
1,614,370	+				-1.2
1,614,371	-				-0.4
1,614,371	-				+1.9
1,614,374	+				+1.7
1,614,374	+				-1.7
1,614,374	+				-0.5
1,614,374	+				-0.8
1,614,374	+				+1.2
1,614,374	+				+1.0
1,614,375	-				+0.2
1,614,375	-				-1.2
1,614,375	-				-0.9
1,614,375	-				+0.9
1,614,375	-				+1.5
1,614,375	-				-2.5
1,614,375	-				-0.1
1,614,381	-				+1.2
1,614,382	+				+1.8
1,614,400	+				-1.7
1,614,400	+				-0.2
1,614,401	-				+1.8
1,614,408	-				-0.1
1,614,526	+				-2.2
1,614,526	+				-1.5
1,614,526	+				+0.2
1,614,526	+				+0.2
1,614,526	+				-0.1
1,614,526	+				+0.9
1,614,526	+				-1.0
1,614,526	+				-2.2
1,614,526	+				+0.1
1,614,526	+				+0.2
1,614,526	+				+1.1
1,614,526	+				+0.5
1,614,526	+				-0.8
1,614,527	-				-2.8
1,614,527	-				-2.1
1,614,527	-				+0.8
1,614,527	-				-1.1
1,614,527	-				+0.3
1,614,527	-				-2.1
1,614,527	-				+4.4
1,614,527	-				+0.2
1,614,527	-				+1.1
1,614,527	-				+0.5
1,614,527	-				-2.5
1,614,527	-				-1.8
1,614,527	-				+0.7
1,614,527	-				-2.6
1,614,527	-				+0.9
1,614,527	-				+0.2
1,614,527	-				-1.9
1,614,527	-				+0.5
1,614,528	+				-2.0
1,614,528	+				-1.1
1,614,528	+				+0.2
1,614,528	+				-2.1
1,614,529	-				+1.9
1,614,559	+				-0.5
1,614,560	-				+2.8
1,614,560	-				-1.1
1,614,618	+				-0.7
1,614,618	+				-0.9
1,614,644	+				-0.3
1,614,709	+				-0.8
1,614,709	+				+1.3
1,614,709	+				+0.3
1,614,709	+				-1.1
1,614,710	-				+0.3
1,614,710	-				-0.3
1,614,710	-				+0.8
1,614,710	-				-0.2
1,614,745	+				-0.3
1,614,745	+				+0.0
1,614,745	+				-2.8
1,614,745	+				-1.3
1,614,746	-				+0.5
1,614,767	+				-0.8
1,614,767	+				-0.1
1,614,767	+				-1.9
1,614,783	+				-0.8
1,614,783	+				-0.5
1,614,783	+				-1.5
1,614,784	-				-1.1
1,614,784	-				+0.1
1,614,784	-				+1.0
1,614,784	-				+2.9
1,614,785	+				+1.5
1,614,785	+				+1.9
1,614,785	+				+0.8
1,614,785	+				-2.9
1,614,785	+				-1.8
1,614,786	-				+1.5
1,614,786	-				+1.5
1,614,786	-				-0.1
1,614,786	-				-1.9
1,614,786	-				-2.6
1,614,786	-				-0.8
1,614,786	-				+1.9
1,614,789	+				-2.8
1,614,789	+				-2.5
1,614,790	-				-3.6
1,614,790	-				-1.5
1,614,790	-				-0.8
1,614,790	-				+1.3
1,614,790	-				-1.1
1,614,790	-				-1.9
1,614,864	+				+1.5
1,614,864	+				+0.4
1,614,864	+				+1.9
1,614,864	+				-0.2
1,614,893	+				-2.4
1,614,893	+				-0.6
1,614,893	+				+0.7
1,614,893	+				-2.7
1,614,893	+				+0.5
1,614,893	+				-2.1
1,614,894	-				-2.6
1,614,894	-				-0.9
1,614,894	-				+0.5
1,614,894	-				-0.1
1,614,894	-				-2.5
1,614,894	-				+1.7
1,614,894	-				-1.9
1,615,018	+		Psyr_1426	0.10	+2.4
1,615,018	+		Psyr_1426	0.10	+0.3
1,615,018	+		Psyr_1426	0.10	+1.0
1,615,018	+		Psyr_1426	0.10	-3.1
1,615,019	-		Psyr_1426	0.10	+1.8
1,615,019	-		Psyr_1426	0.10	+0.4
1,615,019	-		Psyr_1426	0.10	+0.1
1,615,019	-		Psyr_1426	0.10	-1.1
1,615,049	+		Psyr_1426	0.12	+0.5
1,615,049	+		Psyr_1426	0.12	-0.2
1,615,049	+		Psyr_1426	0.12	+1.7
1,615,049	+		Psyr_1426	0.12	-0.6
1,615,049	+		Psyr_1426	0.12	-0.1
1,615,050	-		Psyr_1426	0.12	-0.8
1,615,050	-		Psyr_1426	0.12	-0.5
1,615,050	-		Psyr_1426	0.12	+1.6
1,615,128	+		Psyr_1426	0.17	-0.1
1,615,128	+		Psyr_1426	0.17	-1.3
1,615,129	-		Psyr_1426	0.17	+3.3
1,615,150	+		Psyr_1426	0.19	-2.8
1,615,150	+		Psyr_1426	0.19	+1.7
1,615,150	+		Psyr_1426	0.19	-1.5
1,615,150	+		Psyr_1426	0.19	+0.7
1,615,151	-		Psyr_1426	0.19	-0.4
1,615,151	-		Psyr_1426	0.19	-1.4
1,615,151	-		Psyr_1426	0.19	-0.0
1,615,154	+		Psyr_1426	0.19	-0.5
1,615,213	+		Psyr_1426	0.23	-1.4
1,615,213	+		Psyr_1426	0.23	-1.1
1,615,214	-		Psyr_1426	0.23	-1.6
1,615,214	-		Psyr_1426	0.23	+1.0
1,615,256	+		Psyr_1426	0.26	+1.7
1,615,256	+		Psyr_1426	0.26	-1.3
1,615,257	-		Psyr_1426	0.26	-2.5
1,615,289	+		Psyr_1426	0.28	+1.8
1,615,289	+		Psyr_1426	0.28	+0.3
1,615,290	-		Psyr_1426	0.28	-1.2
1,615,322	+		Psyr_1426	0.30	+0.8
1,615,322	+		Psyr_1426	0.30	-0.4
1,615,322	+		Psyr_1426	0.30	+1.9
1,615,322	+		Psyr_1426	0.30	-0.5
1,615,322	+		Psyr_1426	0.30	-0.3
1,615,323	-		Psyr_1426	0.30	-1.3
1,615,323	-		Psyr_1426	0.30	+0.5
1,615,341	+		Psyr_1426	0.31	-0.8
1,615,341	+		Psyr_1426	0.31	+2.0
1,615,341	+		Psyr_1426	0.31	-0.9
1,615,341	+		Psyr_1426	0.31	-1.7
1,615,342	-		Psyr_1426	0.31	-1.8
1,615,342	-		Psyr_1426	0.31	-0.5
1,615,375	+		Psyr_1426	0.33	-0.1
1,615,375	+		Psyr_1426	0.33	+1.4
1,615,376	-		Psyr_1426	0.33	-0.2
1,615,376	-		Psyr_1426	0.33	+1.4
1,615,391	-		Psyr_1426	0.34	-0.8
1,615,400	+				+2.8
1,615,401	-		Psyr_1426	0.35	+2.4
1,615,401	-		Psyr_1426	0.35	-1.7
1,615,401	-		Psyr_1426	0.35	-0.4
1,615,428	+		Psyr_1426	0.37	+0.9
1,615,429	-		Psyr_1426	0.37	+0.9
1,615,429	-		Psyr_1426	0.37	-1.9
1,615,438	-		Psyr_1426	0.37	+0.6
1,615,624	+		Psyr_1426	0.49	-1.1
1,615,624	+		Psyr_1426	0.49	+1.9
1,615,624	+		Psyr_1426	0.49	+0.9
1,615,624	+		Psyr_1426	0.49	-1.9
1,615,625	-		Psyr_1426	0.50	-1.4
1,615,625	-		Psyr_1426	0.50	+0.5
1,615,625	-		Psyr_1426	0.50	-1.1
1,615,625	-		Psyr_1426	0.50	-0.1
1,615,625	-		Psyr_1426	0.50	+1.7
1,615,734	+				-0.5
1,615,735	-		Psyr_1426	0.57	+0.2
1,615,807	+		Psyr_1426	0.61	-1.3
1,615,808	-		Psyr_1426	0.61	-1.1
1,615,846	-		Psyr_1426	0.64	-1.2
1,615,951	+		Psyr_1426	0.71	+1.4
1,615,951	+		Psyr_1426	0.71	+0.4
1,615,951	+		Psyr_1426	0.71	+2.5
1,615,951	+		Psyr_1426	0.71	-0.8
1,615,952	-		Psyr_1426	0.71	-1.1
1,616,041	+		Psyr_1426	0.77	+1.2
1,616,041	+		Psyr_1426	0.77	+2.1
1,616,065	+		Psyr_1426	0.78	+0.9
1,616,065	+		Psyr_1426	0.78	-2.4
1,616,066	-		Psyr_1426	0.78	-0.4
1,616,081	+		Psyr_1426	0.79	+1.5
1,616,129	-		Psyr_1426	0.82	-0.7
1,616,145	-		Psyr_1426	0.83	-2.3
1,616,174	+		Psyr_1426	0.85	+0.7
1,616,174	+		Psyr_1426	0.85	-3.0
1,616,175	-		Psyr_1426	0.85	-1.7
1,616,175	-		Psyr_1426	0.85	-1.9
1,616,187	+		Psyr_1426	0.86	+0.8
1,616,187	+		Psyr_1426	0.86	-1.8
1,616,188	-		Psyr_1426	0.86	+2.1
1,616,201	+		Psyr_1426	0.87	+1.5
1,616,342	+				+0.9
1,616,343	-				+1.3
1,616,367	+				+0.8
1,616,368	-				+0.7
1,616,368	-				-4.0
1,616,370	+				-0.5
1,616,371	-				-1.0
1,616,371	-				-1.0
1,616,371	-				-2.4
1,616,371	-				+2.2
1,616,371	-				+1.1
1,616,379	+				-2.3
1,616,380	-				+1.1
1,616,380	-				+0.4
1,616,380	-				-1.8
1,616,419	+				-1.1
1,616,500	+		Psyr_1427	0.27	-1.9
1,616,500	+		Psyr_1427	0.27	+0.7
1,616,501	-		Psyr_1427	0.27	-1.6
1,616,561	-		Psyr_1427	0.43	+0.5
1,616,597	+		Psyr_1427	0.53	-2.1
1,616,597	+		Psyr_1427	0.53	-2.2
1,616,597	+		Psyr_1427	0.53	-1.1
1,616,597	+		Psyr_1427	0.53	+1.2
1,616,597	+		Psyr_1427	0.53	-1.8
1,616,597	+		Psyr_1427	0.53	+0.2
1,616,597	+		Psyr_1427	0.53	+0.7
1,616,597	+		Psyr_1427	0.53	+0.7
1,616,597	+		Psyr_1427	0.53	-0.1
1,616,598	-		Psyr_1427	0.53	-2.7
1,616,598	-		Psyr_1427	0.53	+0.2
1,616,598	-		Psyr_1427	0.53	-1.3
1,616,598	-		Psyr_1427	0.53	+1.3
1,616,598	-		Psyr_1427	0.53	-2.6
1,616,598	-		Psyr_1427	0.53	-1.5
1,616,598	-		Psyr_1427	0.53	-1.5
1,616,598	-		Psyr_1427	0.53	+1.5
1,616,598	-		Psyr_1427	0.53	-0.5
1,616,598	-		Psyr_1427	0.53	-0.5
1,616,598	-		Psyr_1427	0.53	-2.1
1,616,603	+		Psyr_1427	0.55	-0.9
1,616,603	+		Psyr_1427	0.55	-2.9
1,616,603	+		Psyr_1427	0.55	+2.7
1,616,603	+		Psyr_1427	0.55	+1.0
1,616,637	+		Psyr_1427	0.64	+0.5
1,616,638	-		Psyr_1427	0.64	-1.6
1,616,638	-		Psyr_1427	0.64	-2.0
1,616,638	-		Psyr_1427	0.64	-0.5
1,616,638	-		Psyr_1427	0.64	-0.3
1,616,653	+		Psyr_1427	0.68	+0.4
1,616,653	+		Psyr_1427	0.68	-1.5
1,616,654	-		Psyr_1427	0.68	+2.0
1,616,654	-		Psyr_1427	0.68	+0.6
1,616,716	+		Psyr_1427	0.85	+0.3
1,616,716	+		Psyr_1427	0.85	-0.8
1,616,717	-		Psyr_1427	0.85	-0.9
1,616,717	-		Psyr_1427	0.85	+0.1
1,616,741	-				+1.3
1,616,741	-				+0.4
1,616,741	-				-2.1
1,616,780	+				+1.7
1,616,780	+				-1.0
1,616,781	-				-0.1
1,616,781	-				-0.1
1,616,877	+				+1.6
1,616,877	+				-0.1
1,616,877	+				+2.0
1,616,878	-				+0.2
1,616,878	-				+1.9
1,616,878	-				+0.2
1,616,878	-				+0.7
1,616,878	-				+1.6
1,617,051	+		Psyr_1428	0.20	-2.5
1,617,075	+		Psyr_1428	0.22	+1.1
1,617,253	+		Psyr_1428	0.35	-1.5
1,617,254	-		Psyr_1428	0.35	-2.3
1,617,365	+		Psyr_1428	0.43	+1.3
1,617,366	-		Psyr_1428	0.43	+1.6
1,617,366	-		Psyr_1428	0.43	+4.5
1,617,366	-		Psyr_1428	0.43	-0.5
1,617,366	-		Psyr_1428	0.43	+0.1