Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1218

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,374,583	+				-2.1
1,374,583	+				+1.8
1,374,584	-				-1.9
1,374,584	-				+0.6
1,374,584	-				-2.0
1,374,605	-				-1.9
1,374,706	-				-1.9
1,374,814	-				-0.7
1,375,070	-		Psyr_1217	0.40	-2.2
1,375,070	-		Psyr_1217	0.40	-1.3
1,375,195	+		Psyr_1217	0.63	-1.2
1,375,195	+		Psyr_1217	0.63	-3.3
1,375,195	+		Psyr_1217	0.63	-2.9
1,375,196	-		Psyr_1217	0.63	+0.5
1,375,196	-		Psyr_1217	0.63	-1.1
1,375,196	-		Psyr_1217	0.63	-2.3
1,375,226	-		Psyr_1217	0.68	+0.2
1,375,384	+				-0.1
1,375,384	+				+1.3
1,375,384	+				-1.6
1,375,384	+				+0.9
1,375,384	+				+0.7
1,375,384	+				+0.0
1,375,384	+				+0.7
1,375,384	+				-0.1
1,375,385	-				+2.4
1,375,385	-				-3.2
1,375,385	-				-2.1
1,375,385	-				-2.9
1,375,385	-				-3.1
1,375,385	-				-1.7
1,375,385	-				-0.1
1,375,385	-				-0.4
1,375,385	-				-2.9
1,375,385	-				-1.0
1,375,385	-				+0.8
1,375,385	-				-3.2
1,375,385	-				-2.1
1,375,410	+				+1.3
1,375,410	+				-0.7
1,375,410	+				-2.7
1,375,410	+				+0.5
1,375,410	+				+0.4
1,375,410	+				-1.5
1,375,411	-				+0.1
1,375,411	-				+0.5
1,375,411	-				-0.3
1,375,411	-				-0.2
1,375,431	+				-1.5
1,375,431	+				+1.1
1,375,479	+				+0.3
1,375,479	+				-0.5
1,375,479	+				+0.5
1,375,479	+				-2.4
1,375,479	+				+2.4
1,375,479	+				+0.5
1,375,479	+				-0.7
1,375,479	+				+0.5
1,375,479	+				-0.9
1,375,479	+				-2.1
1,375,479	+				-0.9
1,375,479	+				-2.9
1,375,479	+				-0.5
1,375,479	+				+0.2
1,375,479	+				-1.2
1,375,479	+				-1.6
1,375,479	+				-3.1
1,375,479	+				-2.1
1,375,479	+				-2.6
1,375,479	+				-0.4
1,375,479	+				-1.6
1,375,479	+				-2.9
1,375,479	+				+0.7
1,375,480	-				-0.1
1,375,480	-				-0.1
1,375,480	-				-1.2
1,375,480	-				-1.0
1,375,480	-				-2.9
1,375,480	-				-1.7
1,375,480	-				-3.2
1,375,480	-				-1.0
1,375,480	-				-1.8
1,375,480	-				-1.3
1,375,480	-				-1.6
1,375,480	-				-0.2
1,375,480	-				-2.2
1,375,480	-				-3.6
1,375,480	-				+0.1
1,375,480	-				-2.4
1,375,480	-				+0.9
1,375,480	-				-0.8
1,375,480	-				-0.9
1,375,481	+				-2.6
1,375,481	+				-1.8
1,375,704	+		Psyr_1218	0.10	+0.3
1,375,704	+		Psyr_1218	0.10	-2.2
1,375,853	-		Psyr_1218	0.17	-2.9
1,375,853	-		Psyr_1218	0.17	-2.9
1,376,155	+		Psyr_1218	0.30	-1.5
1,376,155	+		Psyr_1218	0.30	+0.4
1,376,155	+		Psyr_1218	0.30	-2.9
1,376,155	+		Psyr_1218	0.30	+2.9
1,376,155	+		Psyr_1218	0.30	+0.3
1,376,155	+		Psyr_1218	0.30	-0.2
1,376,155	+		Psyr_1218	0.30	+0.5
1,376,156	-		Psyr_1218	0.30	-1.8
1,376,156	-		Psyr_1218	0.30	+0.2
1,376,156	-		Psyr_1218	0.30	-0.8
1,376,156	-		Psyr_1218	0.30	-1.5
1,376,156	-		Psyr_1218	0.30	+0.3
1,376,156	-		Psyr_1218	0.30	-3.0
1,376,229	+		Psyr_1218	0.33	-2.5
1,376,229	+		Psyr_1218	0.33	+0.8
1,376,229	+		Psyr_1218	0.33	-1.8
1,376,230	-		Psyr_1218	0.33	-3.9
1,376,230	-		Psyr_1218	0.33	-1.9
1,376,230	-		Psyr_1218	0.33	-0.2
1,376,331	+		Psyr_1218	0.37	+1.5
1,376,332	-		Psyr_1218	0.37	-3.0
1,376,355	+		Psyr_1218	0.38	-1.7
1,376,356	-		Psyr_1218	0.39	-1.0
1,376,356	-		Psyr_1218	0.39	-1.4
1,376,478	+		Psyr_1218	0.44	+0.9
1,376,572	-		Psyr_1218	0.48	-2.1
1,376,620	+		Psyr_1218	0.50	-2.8
1,376,621	-		Psyr_1218	0.50	-2.1
1,376,621	-		Psyr_1218	0.50	-1.8
1,376,621	-		Psyr_1218	0.50	-3.4
1,376,681	+		Psyr_1218	0.53	-2.3
1,376,773	+		Psyr_1218	0.57	-0.5
1,376,773	+		Psyr_1218	0.57	-1.3
1,376,774	-		Psyr_1218	0.57	-2.2
1,376,941	+		Psyr_1218	0.64	-0.2
1,377,076	+		Psyr_1218	0.70	-0.1
1,377,076	+		Psyr_1218	0.70	-3.9
1,377,076	+		Psyr_1218	0.70	-0.7
1,377,076	+		Psyr_1218	0.70	-1.9
1,377,076	+		Psyr_1218	0.70	-1.6
1,377,077	-		Psyr_1218	0.70	-2.1
1,377,077	-		Psyr_1218	0.70	-3.0
1,377,077	-		Psyr_1218	0.70	-1.6
1,377,229	+		Psyr_1218	0.76	-0.1
1,377,229	+		Psyr_1218	0.76	-2.9
1,377,229	+		Psyr_1218	0.76	+0.2
1,377,230	-		Psyr_1218	0.76	+2.5
1,377,230	-		Psyr_1218	0.76	-2.8
1,377,230	-		Psyr_1218	0.76	-1.7
1,377,230	-		Psyr_1218	0.76	-0.8
1,377,345	+		Psyr_1218	0.81	-1.7
1,377,482	+		Psyr_1218	0.87	+0.5
1,377,482	+		Psyr_1218	0.87	-2.8
1,377,482	+		Psyr_1218	0.87	-0.2
1,377,483	-		Psyr_1218	0.87	-1.7
1,377,672	+				-2.2
1,377,730	-				-1.7
1,377,904	+				-1.2
1,377,904	+				-2.3
1,377,904	+				-0.8
1,377,916	-				-1.9
1,377,946	+				+0.1
1,377,947	-				-3.1
1,377,950	+				+1.6
1,377,951	-				-3.1
1,378,028	+				+1.7
1,378,028	+				+2.9
1,378,029	-				+1.1
1,378,029	-				+1.3
1,378,029	-				-0.8
1,378,029	-				+0.7
1,378,029	-				-0.1
1,378,030	+				-1.9
1,378,030	+				-0.2
1,378,030	+				-1.5
1,378,030	+				+0.3
1,378,030	+				+2.5
1,378,030	+				+0.1
1,378,030	+				-1.5
1,378,031	-				-1.0
1,378,031	-				-3.7
1,378,031	-				+0.6
1,378,031	-				+0.8
1,378,031	-				+0.3
1,378,031	-				-1.7
1,378,031	-				+0.9
1,378,031	-				-0.6
1,378,124	+		Psyr_1219	0.16	-0.1
1,378,140	+		Psyr_1219	0.17	-0.0
1,378,140	+		Psyr_1219	0.17	+1.2
1,378,140	+		Psyr_1219	0.17	+0.3
1,378,141	-		Psyr_1219	0.17	-2.4
1,378,141	-		Psyr_1219	0.17	-1.7
1,378,141	-		Psyr_1219	0.17	-0.8
1,378,141	-		Psyr_1219	0.17	-3.0
1,378,141	-		Psyr_1219	0.17	+1.5
1,378,141	-		Psyr_1219	0.17	-1.1
1,378,141	-		Psyr_1219	0.17	-1.1
1,378,141	-		Psyr_1219	0.17	-1.8
1,378,141	-		Psyr_1219	0.17	+0.4
1,378,141	-		Psyr_1219	0.17	-0.2
1,378,160	-		Psyr_1219	0.19	-1.5
1,378,203	-		Psyr_1219	0.24	+0.1
1,378,203	-		Psyr_1219	0.24	-0.2
1,378,217	+		Psyr_1219	0.25	+0.5
1,378,222	+		Psyr_1219	0.26	-2.2
1,378,222	+		Psyr_1219	0.26	-1.7
1,378,223	-		Psyr_1219	0.26	-1.8
1,378,223	-		Psyr_1219	0.26	+1.7
1,378,263	+		Psyr_1219	0.30	-1.5
1,378,263	+		Psyr_1219	0.30	-1.8
1,378,264	-		Psyr_1219	0.30	-0.3
1,378,339	+		Psyr_1219	0.38	-0.5
1,378,384	+		Psyr_1219	0.42	+1.7
1,378,384	+		Psyr_1219	0.42	-0.5
1,378,386	+		Psyr_1219	0.43	+3.2
1,378,387	-		Psyr_1219	0.43	+1.2
1,378,414	+		Psyr_1219	0.46	+0.5
1,378,447	+		Psyr_1219	0.49	-2.2
1,378,447	+		Psyr_1219	0.49	-0.8
1,378,448	-		Psyr_1219	0.49	-0.1
1,378,448	-		Psyr_1219	0.49	+0.1
1,378,448	-		Psyr_1219	0.49	-1.5
1,378,448	-		Psyr_1219	0.49	+1.7
1,378,477	+		Psyr_1219	0.52	-2.1
1,378,477	+		Psyr_1219	0.52	+0.0
1,378,477	+		Psyr_1219	0.52	+1.8
1,378,477	+		Psyr_1219	0.52	-2.6
1,378,478	-		Psyr_1219	0.52	+1.9
1,378,478	-		Psyr_1219	0.52	-1.5
1,378,478	-		Psyr_1219	0.52	-1.8
1,378,619	-		Psyr_1219	0.67	+0.3
1,378,619	-		Psyr_1219	0.67	-2.1
1,378,619	-		Psyr_1219	0.67	-1.1
1,378,646	+		Psyr_1219	0.69	-1.6
1,378,647	-		Psyr_1219	0.70	-1.9
1,378,647	-		Psyr_1219	0.70	-0.2
1,378,647	-		Psyr_1219	0.70	+2.5
1,378,647	-		Psyr_1219	0.70	+2.0
1,378,647	-		Psyr_1219	0.70	-0.5
1,378,682	+		Psyr_1219	0.73	+0.9
1,378,682	+		Psyr_1219	0.73	-0.5
1,378,682	+		Psyr_1219	0.73	-0.2
1,378,682	+		Psyr_1219	0.73	-1.1
1,378,682	+		Psyr_1219	0.73	+0.2
1,378,683	-		Psyr_1219	0.73	-1.8
1,378,683	-		Psyr_1219	0.73	+0.5
1,378,683	-		Psyr_1219	0.73	+3.8
1,378,683	-		Psyr_1219	0.73	-0.2
1,378,684	+		Psyr_1219	0.73	+0.3
1,378,684	+		Psyr_1219	0.73	+1.2
1,378,685	-		Psyr_1219	0.73	-0.3
1,378,743	+		Psyr_1219	0.79	+1.2
1,378,743	+		Psyr_1219	0.79	+0.2
1,378,743	+		Psyr_1219	0.79	-1.2
1,378,743	+		Psyr_1219	0.79	+1.3
1,378,743	+		Psyr_1219	0.79	-0.5
1,378,743	+		Psyr_1219	0.79	+0.1
1,378,744	-		Psyr_1219	0.80	+1.0
1,378,744	-		Psyr_1219	0.80	+1.6
1,378,744	-		Psyr_1219	0.80	-0.6
1,378,744	-		Psyr_1219	0.80	-3.1
1,378,744	-		Psyr_1219	0.80	-1.7
1,378,758	+		Psyr_1219	0.81	-0.7