Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0916

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
1,039,525	+				+1.8
1,039,535	+				-1.0
1,039,555	-				-2.7
1,039,573	-				-2.0
1,039,573	-				-1.8
1,039,580	-				+2.0
1,039,580	-				+0.8
1,039,872	+		Psyr_0915	0.31	-1.1
1,039,872	+		Psyr_0915	0.31	-3.3
1,039,872	+		Psyr_0915	0.31	+0.5
1,039,872	+		Psyr_0915	0.31	-1.3
1,039,873	-		Psyr_0915	0.31	+0.7
1,039,873	-		Psyr_0915	0.31	-1.1
1,039,873	-		Psyr_0915	0.31	-4.6
1,039,990	+		Psyr_0915	0.44	-0.1
1,039,990	+		Psyr_0915	0.44	-3.3
1,039,990	+		Psyr_0915	0.44	-0.4
1,039,990	+		Psyr_0915	0.44	-3.5
1,039,991	-		Psyr_0915	0.44	-2.7
1,039,991	-		Psyr_0915	0.44	-0.7
1,039,991	-		Psyr_0915	0.44	-1.1
1,039,991	-		Psyr_0915	0.44	+0.5
1,039,991	-		Psyr_0915	0.44	-1.7
1,039,991	-		Psyr_0915	0.44	-0.8
1,039,991	-		Psyr_0915	0.44	-3.8
1,039,991	-		Psyr_0915	0.44	-1.1
1,040,047	+		Psyr_0915	0.51	+0.0
1,040,047	+		Psyr_0915	0.51	-1.7
1,040,047	+		Psyr_0915	0.51	-1.8
1,040,047	+		Psyr_0915	0.51	-1.5
1,040,047	+		Psyr_0915	0.51	-4.2
1,040,047	+		Psyr_0915	0.51	-3.2
1,040,047	+		Psyr_0915	0.51	+0.2
1,040,047	+		Psyr_0915	0.51	-3.0
1,040,047	+		Psyr_0915	0.51	-2.3
1,040,047	+		Psyr_0915	0.51	-1.8
1,040,047	+		Psyr_0915	0.51	-0.5
1,040,047	+		Psyr_0915	0.51	-3.2
1,040,048	-		Psyr_0915	0.51	-1.8
1,040,048	-		Psyr_0915	0.51	-3.1
1,040,048	-		Psyr_0915	0.51	-1.8
1,040,048	-		Psyr_0915	0.51	-1.5
1,040,048	-		Psyr_0915	0.51	-2.7
1,040,048	-		Psyr_0915	0.51	+0.5
1,040,048	-		Psyr_0915	0.51	-2.8
1,040,048	-		Psyr_0915	0.51	-4.3
1,040,048	-		Psyr_0915	0.51	-0.8
1,040,048	-		Psyr_0915	0.51	-1.8
1,040,074	+		Psyr_0915	0.54	-3.0
1,040,075	-		Psyr_0915	0.54	-1.6
1,040,075	-		Psyr_0915	0.54	-2.8
1,040,135	-		Psyr_0915	0.60	-2.5
1,040,234	-		Psyr_0915	0.71	-1.3
1,040,354	-		Psyr_0915	0.85	-1.7
1,040,354	-		Psyr_0915	0.85	-1.5
1,040,441	+				+0.5
1,040,441	+				-4.1
1,040,442	-				-2.1
1,040,483	+				-2.7
1,040,483	+				-0.5
1,040,483	+				-3.0
1,040,512	+				-0.8
1,040,566	+				-1.0
1,040,664	-		Psyr_0916	0.17	-0.8
1,040,833	+		Psyr_0916	0.33	+0.1
1,040,833	+		Psyr_0916	0.33	+4.4
1,040,833	+		Psyr_0916	0.33	+1.7
1,040,833	+		Psyr_0916	0.33	+1.5
1,040,833	+		Psyr_0916	0.33	-0.1
1,040,833	+		Psyr_0916	0.33	-1.9
1,040,833	+		Psyr_0916	0.33	-0.8
1,040,833	+		Psyr_0916	0.33	-2.0
1,040,833	+		Psyr_0916	0.33	-1.0
1,040,833	+		Psyr_0916	0.33	+0.9
1,040,834	-		Psyr_0916	0.33	-1.8
1,040,844	+		Psyr_0916	0.34	-1.7
1,040,844	+		Psyr_0916	0.34	-2.6
1,040,844	+		Psyr_0916	0.34	-2.5
1,040,845	-		Psyr_0916	0.34	+0.5
1,040,845	-		Psyr_0916	0.34	-0.8
1,040,845	-		Psyr_0916	0.34	-1.7
1,040,845	-		Psyr_0916	0.34	-0.9
1,041,019	-		Psyr_0916	0.51	+0.5
1,041,030	+		Psyr_0916	0.52	-1.1
1,041,087	+		Psyr_0916	0.58	-3.3
1,041,104	+		Psyr_0916	0.60	-1.2
1,041,104	+		Psyr_0916	0.60	-2.9
1,041,104	+		Psyr_0916	0.60	-2.4
1,041,105	-		Psyr_0916	0.60	-3.3
1,041,105	-		Psyr_0916	0.60	-1.7
1,041,105	-		Psyr_0916	0.60	-2.1
1,041,285	+		Psyr_0916	0.77	+1.5
1,041,285	+		Psyr_0916	0.77	-1.7
1,041,285	+		Psyr_0916	0.77	-2.7
1,041,285	+		Psyr_0916	0.77	-3.3
1,041,285	+		Psyr_0916	0.77	-0.8
1,041,286	-		Psyr_0916	0.77	+0.1
1,041,286	-		Psyr_0916	0.77	-2.3
1,041,305	-		Psyr_0916	0.79	-2.2
1,041,305	-		Psyr_0916	0.79	+1.4
1,041,348	+		Psyr_0916	0.83	+1.5
1,041,349	-		Psyr_0916	0.83	-0.5
1,041,349	-		Psyr_0916	0.83	-1.7
1,041,367	+		Psyr_0916	0.85	-0.5
1,041,395	+		Psyr_0916	0.88	-2.7
1,041,395	+		Psyr_0916	0.88	-2.7
1,041,395	+		Psyr_0916	0.88	-1.8
1,041,395	+		Psyr_0916	0.88	-1.1
1,041,395	+		Psyr_0916	0.88	+0.5
1,041,395	+		Psyr_0916	0.88	-0.1
1,041,395	+		Psyr_0916	0.88	-1.3
1,041,395	+		Psyr_0916	0.88	-0.5
1,041,396	-		Psyr_0916	0.88	-1.5
1,041,396	-		Psyr_0916	0.88	-2.5
1,041,396	-		Psyr_0916	0.88	+0.3
1,041,396	-		Psyr_0916	0.88	-0.7
1,041,396	-		Psyr_0916	0.88	-2.0
1,041,396	-		Psyr_0916	0.88	-1.7
1,041,396	-		Psyr_0916	0.88	-1.7
1,041,396	-		Psyr_0916	0.88	-3.0
1,041,396	-		Psyr_0916	0.88	-0.5
1,041,397	+		Psyr_0916	0.88	-0.5
1,041,397	+		Psyr_0916	0.88	-2.0
1,041,398	-		Psyr_0916	0.88	-2.6
1,041,430	-				-2.2
1,041,430	-				-1.7
1,041,445	+				-3.4
1,041,447	+				-2.1
1,041,447	+				-2.1
1,041,447	+				+1.0
1,041,448	-				-0.6
1,041,448	-				-1.7
1,041,523	+				-1.1
1,041,523	+				-2.8
1,041,523	+				-1.4
1,041,523	+				-1.8
1,041,523	+				+1.1
1,041,523	+				-1.9
1,041,524	-				-0.1
1,041,524	-				-2.1
1,041,524	-				-1.3
1,041,524	-				+0.7
1,041,524	-				-3.0
1,041,524	-				-2.5
1,041,524	-				+0.5
1,041,524	-				+2.8
1,041,524	-				-2.7
1,041,524	-				-2.0
1,041,524	-				-1.5
1,041,524	-				-4.0
1,041,524	-				+0.5
1,041,524	-				-1.5
1,041,524	-				-2.1
1,041,524	-				+0.9
1,041,524	-				+0.3
1,041,532	+				-1.5
1,041,533	-				+1.1
1,041,562	-				-1.3
1,041,576	+				-0.1
1,041,576	+				-3.2
1,041,576	+				+0.7
1,041,576	+				+1.5
1,041,576	+				+0.2
1,041,576	+				-0.9
1,041,576	+				-0.1
1,041,576	+				-1.7
1,041,577	-				+0.3
1,041,577	-				+1.6
1,041,577	-				-0.6
1,041,581	+				-2.3
1,041,581	+				-1.4
1,041,581	+				-1.1
1,041,581	+				-3.1
1,041,581	+				+1.4
1,041,581	+				-0.8
1,041,581	+				-0.8
1,041,581	+				+1.7
1,041,581	+				-0.8
1,041,581	+				+1.9
1,041,581	+				-1.3
1,041,581	+				-1.5
1,041,581	+				+0.5
1,041,581	+				-1.5
1,041,581	+				+1.6
1,041,581	+				-0.1
1,041,582	-				+0.8
1,041,582	-				-2.6
1,041,582	-				-1.3
1,041,582	-				-1.6
1,041,582	-				-0.6
1,041,582	-				+0.9
1,041,582	-				-2.2
1,041,582	-				-1.0
1,041,582	-				+0.8
1,041,601	-				-1.1
1,041,616	+				+1.5
1,041,616	+				-1.3
1,041,617	-				+3.7
1,041,617	-				-0.5
1,041,617	-				-2.5
1,041,617	-				+0.3
1,041,618	+				+0.5
1,041,618	+				-1.1
1,041,619	-				+0.5
1,041,620	+				+0.7
1,041,620	+				+1.5
1,041,620	+				+1.7
1,041,620	+				-0.8
1,041,620	+				+0.1
1,041,620	+				+1.0
1,041,620	+				+0.5
1,041,620	+				+0.3
1,041,620	+				-0.1
1,041,620	+				-2.7
1,041,620	+				-2.7
1,041,620	+				-0.4
1,041,620	+				-0.5
1,041,621	-				-0.7
1,041,621	-				-2.2
1,041,621	-				-3.0
1,041,621	-				-0.7
1,041,621	-				+1.5
1,041,621	-				+2.0
1,041,621	-				+0.2
1,041,621	-				-1.5
1,041,621	-				+1.5
1,041,621	-				-0.1
1,041,621	-				-1.8
1,041,621	-				-2.3
1,041,621	-				-2.7
1,041,638	-				+0.5
1,041,646	-				-2.3
1,041,830	+				+0.5
1,041,830	+				+1.1
1,041,830	+				-0.8
1,041,830	+				-0.1
1,041,830	+				-0.8
1,041,830	+				+0.8
1,041,830	+				+0.0
1,041,831	-				-2.3
1,041,831	-				-2.3
1,041,832	+				-2.0
1,041,832	+				+0.3
1,041,832	+				+1.2
1,041,833	-				+1.5
1,041,852	+				+1.1
1,041,852	+				+0.9
1,041,853	-				-1.1
1,041,882	+				+1.0
1,041,882	+				-0.7
1,041,882	+				-2.1
1,041,883	-				-1.5
1,041,883	-				-2.7
1,041,883	-				-0.5
1,041,883	-				-0.5
1,041,883	-				-2.5
1,041,883	-				-1.8
1,041,883	-				-3.0
1,041,883	-				-1.3
1,041,883	-				-2.1
1,041,883	-				-2.0
1,041,883	-				+0.8
1,041,883	-				-2.3
1,041,883	-				-1.6
1,041,914	-				-2.1
1,041,914	-				-0.0
1,041,917	+				-2.1
1,041,918	-				-0.8
1,041,930	+				+0.3
1,041,931	-				-1.0
1,041,931	-				-1.7
1,041,931	-				-2.4
1,041,931	-				-0.1
1,042,085	+				-1.1
1,042,085	+				-2.4
1,042,085	+				-1.1
1,042,085	+				+0.5
1,042,085	+				-1.8
1,042,085	+				-1.1
1,042,085	+				-0.8
1,042,086	-				-2.5
1,042,086	-				-0.1
1,042,086	-				-2.5
1,042,086	-				-0.5
1,042,086	-				-2.6
1,042,086	-				-0.5
1,042,086	-				-1.1
1,042,086	-				-0.8
1,042,088	-				-2.5
1,042,088	-				-1.3
1,042,088	-				-2.1
1,042,088	-				-1.3
1,042,173	+		Psyr_0917	0.18	-0.1
1,042,174	-		Psyr_0917	0.18	+0.5
1,042,230	+		Psyr_0917	0.25	+0.5
1,042,230	+		Psyr_0917	0.25	-1.3
1,042,230	+		Psyr_0917	0.25	-1.1
1,042,230	+		Psyr_0917	0.25	+0.5
1,042,230	+		Psyr_0917	0.25	-0.8
1,042,230	+		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-0.5
1,042,231	-		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-1.7
1,042,231	-		Psyr_0917	0.25	-2.3
1,042,231	-		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-1.3
1,042,231	-		Psyr_0917	0.25	-0.1
1,042,231	-		Psyr_0917	0.25	-0.8
1,042,231	-		Psyr_0917	0.25	-1.3
1,042,259	+		Psyr_0917	0.29	-0.5
1,042,398	+		Psyr_0917	0.46	-1.1
1,042,398	+		Psyr_0917	0.46	-1.7
1,042,398	+		Psyr_0917	0.46	-1.8
1,042,398	+		Psyr_0917	0.46	-1.3
1,042,398	+		Psyr_0917	0.46	+0.5
1,042,398	+		Psyr_0917	0.46	-0.5
1,042,398	+		Psyr_0917	0.46	+0.5
1,042,399	-		Psyr_0917	0.46	-3.4
1,042,399	-		Psyr_0917	0.46	-2.3
1,042,399	-		Psyr_0917	0.46	-3.5
1,042,399	-		Psyr_0917	0.46	-2.0
1,042,399	-		Psyr_0917	0.46	+1.5
1,042,399	-		Psyr_0917	0.46	-0.5
1,042,402	+		Psyr_0917	0.47	-0.1
1,042,402	+		Psyr_0917	0.47	+1.5
1,042,402	+		Psyr_0917	0.47	-1.8
1,042,402	+		Psyr_0917	0.47	-3.3
1,042,403	-		Psyr_0917	0.47	-1.8
1,042,403	-		Psyr_0917	0.47	-1.8
1,042,403	-		Psyr_0917	0.47	-1.1
1,042,403	-		Psyr_0917	0.47	-1.7
1,042,403	-		Psyr_0917	0.47	-1.8
1,042,403	-		Psyr_0917	0.47	-2.0
1,042,496	+		Psyr_0917	0.58	-0.8