Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0846 and Psyr_0847 are separated by 2 nucleotides Psyr_0847 and Psyr_0848 are separated by 47 nucleotides Psyr_0848 and Psyr_0849 are separated by 170 nucleotides
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390
_0847
Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454
_0848
Psyr_0849: Psyr_0849 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 961,625 to 962,470
_0849
Position (kb) 960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 959.567 kb on + strand, within Psyr_0846 at 959.568 kb on - strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.708 kb on + strand, within Psyr_0846 at 959.709 kb on - strand, within Psyr_0846 at 959.728 kb on + strand at 959.866 kb on + strand at 959.867 kb on - strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.907 kb on + strand at 959.976 kb on + strand, within Psyr_0847 at 959.976 kb on + strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.257 kb on - strand, within Psyr_0847 at 960.388 kb on + strand at 960.388 kb on + strand at 960.397 kb on + strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.423 kb on + strand at 960.702 kb on + strand, within Psyr_0848 at 960.702 kb on + strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.774 kb on + strand, within Psyr_0848 at 960.894 kb on + strand, within Psyr_0848 at 960.936 kb on + strand, within Psyr_0848 at 960.937 kb on - strand, within Psyr_0848 at 960.937 kb on - strand, within Psyr_0848 at 961.107 kb on + strand, within Psyr_0848 at 961.107 kb on + strand, within Psyr_0848 at 961.108 kb on - strand, within Psyr_0848 at 961.108 kb on - strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.152 kb on + strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.153 kb on - strand, within Psyr_0848 at 961.179 kb on + strand, within Psyr_0848 at 961.179 kb on + strand, within Psyr_0848 at 961.180 kb on - strand, within Psyr_0848 at 961.180 kb on - strand, within Psyr_0848 at 961.212 kb on + strand, within Psyr_0848 at 961.212 kb on + strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.213 kb on - strand, within Psyr_0848 at 961.356 kb on - strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.452 kb on + strand at 961.453 kb on - strand at 961.453 kb on - strand at 961.453 kb on - strand at 961.479 kb on - strand at 961.479 kb on - strand at 961.479 kb on - strand at 961.489 kb on + strand at 961.545 kb on + strand at 961.545 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.547 kb on + strand at 961.618 kb on - strand at 961.618 kb on - strand at 961.678 kb on - strand at 961.682 kb on - strand at 961.682 kb on - strand at 961.741 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.745 kb on + strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.746 kb on - strand, within Psyr_0849 at 961.793 kb on + strand, within Psyr_0849 at 961.793 kb on + strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.794 kb on - strand, within Psyr_0849 at 961.863 kb on - strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.075 kb on + strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.076 kb on - strand, within Psyr_0849 at 962.079 kb on + strand, within Psyr_0849 at 962.080 kb on - strand, within Psyr_0849 at 962.113 kb on + strand, within Psyr_0849 at 962.141 kb on + strand, within Psyr_0849 at 962.141 kb on + strand, within Psyr_0849 at 962.178 kb on + strand, within Psyr_0849 at 962.178 kb on + strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.179 kb on - strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.294 kb on + strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.295 kb on - strand, within Psyr_0849 at 962.376 kb on + strand, within Psyr_0849 at 962.409 kb on + strand at 962.420 kb on + strand at 962.444 kb on + strand at 962.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 959,567 + Psyr_0846 0.81 -2.3 959,568 - Psyr_0846 0.81 -1.2 959,642 + Psyr_0846 0.85 -1.1 959,642 + Psyr_0846 0.85 -3.0 959,666 + Psyr_0846 0.87 -2.0 959,666 + Psyr_0846 0.87 -1.0 959,666 + Psyr_0846 0.87 -2.3 959,666 + Psyr_0846 0.87 -2.1 959,666 + Psyr_0846 0.87 -3.0 959,666 + Psyr_0846 0.87 -3.5 959,667 - Psyr_0846 0.87 -2.1 959,667 - Psyr_0846 0.87 -2.6 959,708 + Psyr_0846 0.89 -0.8 959,709 - Psyr_0846 0.89 -1.8 959,728 + -3.4 959,866 + -0.8 959,867 - -1.1 959,894 + -1.8 959,894 + -0.5 959,894 + -2.9 959,894 + -2.7 959,894 + -3.6 959,894 + -3.0 959,894 + -1.8 959,894 + -1.1 959,895 - -1.3 959,895 - -1.5 959,895 - -1.7 959,895 - -1.1 959,895 - -1.5 959,895 - -1.7 959,895 - -2.6 959,895 - -3.3 959,907 + -1.2 959,976 + Psyr_0847 0.16 -1.8 959,976 + Psyr_0847 0.16 -1.8 959,977 - Psyr_0847 0.16 -1.3 959,977 - Psyr_0847 0.16 -1.7 959,977 - Psyr_0847 0.16 -1.0 959,980 + Psyr_0847 0.16 -2.3 959,980 + Psyr_0847 0.16 +0.5 959,980 + Psyr_0847 0.16 -1.7 959,980 + Psyr_0847 0.16 -0.1 959,980 + Psyr_0847 0.16 -3.0 959,980 + Psyr_0847 0.16 -2.5 959,980 + Psyr_0847 0.16 -2.2 959,980 + Psyr_0847 0.16 -2.7 959,981 - Psyr_0847 0.17 -2.0 959,981 - Psyr_0847 0.17 +0.3 959,981 - Psyr_0847 0.17 -1.3 959,981 - Psyr_0847 0.17 -2.4 959,981 - Psyr_0847 0.17 -3.2 959,981 - Psyr_0847 0.17 -2.9 959,981 - Psyr_0847 0.17 -0.5 960,050 + Psyr_0847 0.31 +0.5 960,050 + Psyr_0847 0.31 -2.9 960,051 - Psyr_0847 0.31 +1.0 960,051 - Psyr_0847 0.31 -0.3 960,257 - Psyr_0847 0.73 -1.7 960,388 + -2.0 960,388 + +0.9 960,397 + -2.3 960,398 - -2.5 960,398 - -3.2 960,398 - -2.5 960,423 + -1.0 960,702 + Psyr_0848 0.26 -2.9 960,702 + Psyr_0848 0.26 -2.4 960,703 - Psyr_0848 0.26 -1.1 960,703 - Psyr_0848 0.26 -3.4 960,703 - Psyr_0848 0.26 -0.1 960,774 + Psyr_0848 0.33 -2.7 960,894 + Psyr_0848 0.45 -3.0 960,936 + Psyr_0848 0.49 -3.5 960,937 - Psyr_0848 0.49 -0.4 960,937 - Psyr_0848 0.49 -4.4 961,107 + Psyr_0848 0.66 -0.5 961,107 + Psyr_0848 0.66 -1.3 961,108 - Psyr_0848 0.66 -2.0 961,108 - Psyr_0848 0.66 -0.1 961,152 + Psyr_0848 0.70 +0.5 961,152 + Psyr_0848 0.70 -3.5 961,152 + Psyr_0848 0.70 -2.8 961,152 + Psyr_0848 0.70 -1.9 961,152 + Psyr_0848 0.70 -2.8 961,152 + Psyr_0848 0.70 -0.8 961,153 - Psyr_0848 0.70 -2.2 961,153 - Psyr_0848 0.70 -3.5 961,153 - Psyr_0848 0.70 -2.3 961,153 - Psyr_0848 0.70 -1.3 961,153 - Psyr_0848 0.70 -1.1 961,153 - Psyr_0848 0.70 -1.2 961,153 - Psyr_0848 0.70 -2.8 961,153 - Psyr_0848 0.70 -2.6 961,179 + Psyr_0848 0.73 -1.5 961,179 + Psyr_0848 0.73 +1.5 961,180 - Psyr_0848 0.73 +0.5 961,180 - Psyr_0848 0.73 -2.2 961,212 + Psyr_0848 0.76 -3.1 961,212 + Psyr_0848 0.76 -0.8 961,213 - Psyr_0848 0.76 -2.2 961,213 - Psyr_0848 0.76 -2.5 961,213 - Psyr_0848 0.76 -2.4 961,213 - Psyr_0848 0.76 -2.5 961,356 - -2.1 961,452 + +1.0 961,452 + +0.4 961,452 + +0.8 961,452 + -0.5 961,452 + -2.6 961,452 + -1.3 961,453 - -0.4 961,453 - -0.6 961,453 - +0.1 961,479 - +1.5 961,479 - -1.2 961,479 - -0.3 961,489 + -1.2 961,545 + +1.8 961,545 + -1.4 961,547 + -1.7 961,547 + +1.8 961,547 + -1.7 961,547 + +1.7 961,547 + -0.8 961,618 - -0.1 961,618 - -0.5 961,678 - -0.5 961,682 - -0.7 961,682 - -2.8 961,741 + Psyr_0849 0.14 -1.1 961,745 + Psyr_0849 0.14 +1.0 961,745 + Psyr_0849 0.14 +3.2 961,745 + Psyr_0849 0.14 -0.8 961,745 + Psyr_0849 0.14 -0.5 961,746 - Psyr_0849 0.14 +1.8 961,746 - Psyr_0849 0.14 +0.2 961,746 - Psyr_0849 0.14 -1.1 961,746 - Psyr_0849 0.14 -0.8 961,746 - Psyr_0849 0.14 +1.7 961,746 - Psyr_0849 0.14 +1.7 961,746 - Psyr_0849 0.14 -0.1 961,746 - Psyr_0849 0.14 +1.0 961,746 - Psyr_0849 0.14 -2.2 961,746 - Psyr_0849 0.14 +2.2 961,746 - Psyr_0849 0.14 +1.0 961,746 - Psyr_0849 0.14 +2.0 961,793 + Psyr_0849 0.20 -0.5 961,793 + Psyr_0849 0.20 +0.1 961,794 - Psyr_0849 0.20 +3.3 961,794 - Psyr_0849 0.20 -0.8 961,794 - Psyr_0849 0.20 +0.1 961,863 - Psyr_0849 0.28 +0.5 962,075 + Psyr_0849 0.53 +1.4 962,075 + Psyr_0849 0.53 -1.5 962,075 + Psyr_0849 0.53 -1.7 962,075 + Psyr_0849 0.53 -2.0 962,075 + Psyr_0849 0.53 +3.0 962,075 + Psyr_0849 0.53 +3.0 962,075 + Psyr_0849 0.53 -2.0 962,075 + Psyr_0849 0.53 -0.3 962,075 + Psyr_0849 0.53 +1.5 962,075 + Psyr_0849 0.53 -0.5 962,075 + Psyr_0849 0.53 -1.5 962,075 + Psyr_0849 0.53 -2.2 962,075 + Psyr_0849 0.53 -0.3 962,075 + Psyr_0849 0.53 -2.0 962,075 + Psyr_0849 0.53 -1.8 962,075 + Psyr_0849 0.53 +0.3 962,075 + Psyr_0849 0.53 -1.0 962,075 + Psyr_0849 0.53 +0.3 962,075 + Psyr_0849 0.53 -2.2 962,076 - Psyr_0849 0.53 -0.7 962,076 - Psyr_0849 0.53 -1.7 962,076 - Psyr_0849 0.53 -0.5 962,076 - Psyr_0849 0.53 -2.2 962,076 - Psyr_0849 0.53 -2.3 962,076 - Psyr_0849 0.53 -0.4 962,076 - Psyr_0849 0.53 -0.5 962,076 - Psyr_0849 0.53 +0.5 962,076 - Psyr_0849 0.53 -1.5 962,076 - Psyr_0849 0.53 +1.1 962,076 - Psyr_0849 0.53 -1.3 962,076 - Psyr_0849 0.53 -0.6 962,076 - Psyr_0849 0.53 -0.8 962,076 - Psyr_0849 0.53 -0.1 962,076 - Psyr_0849 0.53 -2.3 962,076 - Psyr_0849 0.53 -0.2 962,076 - Psyr_0849 0.53 -0.8 962,076 - Psyr_0849 0.53 -0.8 962,079 + Psyr_0849 0.54 -0.1 962,080 - Psyr_0849 0.54 +0.7 962,113 + Psyr_0849 0.58 -0.5 962,141 + Psyr_0849 0.61 -1.5 962,141 + Psyr_0849 0.61 -0.5 962,178 + Psyr_0849 0.65 -0.6 962,178 + Psyr_0849 0.65 -2.4 962,179 - Psyr_0849 0.65 +0.5 962,179 - Psyr_0849 0.65 -0.5 962,179 - Psyr_0849 0.65 +1.1 962,294 + Psyr_0849 0.79 +1.5 962,294 + Psyr_0849 0.79 -1.3 962,294 + Psyr_0849 0.79 -2.1 962,294 + Psyr_0849 0.79 +0.9 962,294 + Psyr_0849 0.79 -0.8 962,294 + Psyr_0849 0.79 +0.6 962,295 - Psyr_0849 0.79 -0.8 962,295 - Psyr_0849 0.79 -1.3 962,295 - Psyr_0849 0.79 -1.8 962,295 - Psyr_0849 0.79 -0.0 962,295 - Psyr_0849 0.79 -1.7 962,376 + Psyr_0849 0.89 +2.1 962,409 + -2.0 962,420 + -1.5 962,444 + -2.8 962,452 - -2.7
Or see this region's nucleotide sequence