Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0825 and Psyr_0826 are separated by 383 nucleotides Psyr_0826 and Psyr_0827 are separated by 253 nucleotides
Psyr_0825: Psyr_0825 - conserved hypothetical protein, at 933,674 to 934,540
_0825
Psyr_0826: Psyr_0826 - glucose-6-phosphate isomerase, at 934,924 to 936,588
_0826
Psyr_0827: Psyr_0827 - pantothenate synthetase, at 936,842 to 937,693
_0827
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 933.963 kb on + strand, within Psyr_0825 at 933.963 kb on + strand, within Psyr_0825 at 933.963 kb on + strand, within Psyr_0825 at 933.964 kb on - strand, within Psyr_0825 at 934.038 kb on + strand, within Psyr_0825 at 934.038 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.042 kb on - strand, within Psyr_0825 at 934.080 kb on + strand, within Psyr_0825 at 934.118 kb on + strand, within Psyr_0825 at 934.119 kb on - strand, within Psyr_0825 at 934.158 kb on + strand, within Psyr_0825 at 934.241 kb on - strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.249 kb on - strand, within Psyr_0825 at 934.568 kb on + strand at 934.568 kb on + strand at 934.569 kb on - strand at 934.569 kb on - strand at 934.632 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.650 kb on - strand at 934.650 kb on - strand at 934.662 kb on - strand at 934.662 kb on - strand at 934.662 kb on - strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.689 kb on - strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.845 kb on + strand at 934.845 kb on + strand at 934.846 kb on - strand at 934.949 kb on + strand at 934.949 kb on + strand at 934.950 kb on - strand at 934.950 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.414 kb on + strand, within Psyr_0826 at 935.414 kb on + strand, within Psyr_0826 at 935.415 kb on - strand, within Psyr_0826 at 935.481 kb on + strand, within Psyr_0826 at 935.555 kb on + strand, within Psyr_0826 at 935.684 kb on + strand, within Psyr_0826 at 935.685 kb on - strand, within Psyr_0826 at 935.685 kb on - strand, within Psyr_0826 at 935.791 kb on - strand, within Psyr_0826 at 935.791 kb on - strand, within Psyr_0826 at 935.900 kb on + strand, within Psyr_0826 at 935.943 kb on + strand, within Psyr_0826 at 936.039 kb on - strand, within Psyr_0826 at 936.039 kb on - strand, within Psyr_0826 at 936.221 kb on - strand, within Psyr_0826 at 936.333 kb on - strand, within Psyr_0826 at 936.333 kb on - strand, within Psyr_0826 at 936.581 kb on + strand at 936.582 kb on - strand at 936.605 kb on + strand at 936.605 kb on + strand at 936.687 kb on - strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.762 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.970 kb on - strand, within Psyr_0827 at 937.080 kb on + strand, within Psyr_0827 at 937.081 kb on - strand, within Psyr_0827 at 937.161 kb on - strand, within Psyr_0827 at 937.398 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.483 kb on - strand, within Psyr_0827 at 937.531 kb on + strand, within Psyr_0827
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 933,963 + Psyr_0825 0.33 -1.3 933,963 + Psyr_0825 0.33 -0.1 933,963 + Psyr_0825 0.33 -0.1 933,964 - Psyr_0825 0.33 -1.1 934,038 + Psyr_0825 0.42 -0.7 934,038 + Psyr_0825 0.42 +1.1 934,041 + Psyr_0825 0.42 +1.5 934,041 + Psyr_0825 0.42 +2.0 934,041 + Psyr_0825 0.42 +1.9 934,042 - Psyr_0825 0.42 -1.3 934,080 + Psyr_0825 0.47 +0.9 934,118 + Psyr_0825 0.51 -0.6 934,119 - Psyr_0825 0.51 -2.2 934,158 + Psyr_0825 0.56 -1.5 934,241 - Psyr_0825 0.65 +1.7 934,248 + Psyr_0825 0.66 +1.5 934,248 + Psyr_0825 0.66 +1.2 934,248 + Psyr_0825 0.66 -0.5 934,249 - Psyr_0825 0.66 +0.9 934,568 + -0.4 934,568 + -0.9 934,569 - +0.6 934,569 - +1.6 934,632 + +1.4 934,649 + +0.3 934,649 + -0.0 934,649 + -2.1 934,649 + +2.0 934,650 - -1.0 934,650 - +0.2 934,662 - -0.1 934,662 - +2.5 934,662 - +2.1 934,688 + +0.3 934,688 + -0.7 934,688 + -2.7 934,688 + -0.1 934,688 + +1.0 934,689 - -0.5 934,701 + +0.1 934,701 + -1.8 934,701 + +1.9 934,701 + -1.7 934,701 + -1.5 934,701 + -1.2 934,701 + -0.9 934,701 + -1.1 934,701 + -1.1 934,701 + -0.4 934,702 - -1.4 934,702 - +2.0 934,702 - +0.9 934,702 - -2.6 934,702 - -2.6 934,702 - +0.8 934,702 - -0.2 934,702 - -0.9 934,702 - -2.4 934,718 + -0.7 934,718 + -2.1 934,718 + +3.0 934,718 + +1.5 934,718 + +1.0 934,718 + +0.5 934,718 + +1.2 934,718 + +0.8 934,718 + -1.1 934,718 + +0.3 934,718 + +0.6 934,718 + -0.1 934,718 + -0.1 934,718 + +0.2 934,719 - -0.4 934,719 - -1.1 934,719 - +1.0 934,719 - +1.1 934,802 + -1.1 934,802 + -1.3 934,802 + +0.9 934,802 + -0.9 934,802 + -0.1 934,845 + -0.5 934,845 + +2.3 934,846 - +0.9 934,949 + -0.1 934,949 + +1.5 934,950 - -0.9 934,950 - -1.5 935,016 - -1.5 935,016 - -0.5 935,111 + Psyr_0826 0.11 -0.9 935,111 + Psyr_0826 0.11 -1.1 935,111 + Psyr_0826 0.11 +0.5 935,111 + Psyr_0826 0.11 -3.3 935,111 + Psyr_0826 0.11 -0.9 935,111 + Psyr_0826 0.11 -0.1 935,111 + Psyr_0826 0.11 -0.9 935,111 + Psyr_0826 0.11 -0.5 935,111 + Psyr_0826 0.11 -2.1 935,111 + Psyr_0826 0.11 -2.0 935,111 + Psyr_0826 0.11 -1.5 935,111 + Psyr_0826 0.11 +0.5 935,111 + Psyr_0826 0.11 -0.5 935,111 + Psyr_0826 0.11 -2.6 935,112 - Psyr_0826 0.11 -2.6 935,112 - Psyr_0826 0.11 -0.5 935,112 - Psyr_0826 0.11 -1.5 935,112 - Psyr_0826 0.11 -2.0 935,112 - Psyr_0826 0.11 -2.6 935,112 - Psyr_0826 0.11 -0.5 935,112 - Psyr_0826 0.11 -0.1 935,112 - Psyr_0826 0.11 -0.5 935,414 + Psyr_0826 0.29 -0.9 935,414 + Psyr_0826 0.29 -1.9 935,415 - Psyr_0826 0.29 -2.9 935,481 + Psyr_0826 0.33 -1.3 935,555 + Psyr_0826 0.38 -1.1 935,684 + Psyr_0826 0.46 -2.5 935,685 - Psyr_0826 0.46 -1.7 935,685 - Psyr_0826 0.46 -2.1 935,791 - Psyr_0826 0.52 -0.9 935,791 - Psyr_0826 0.52 -1.9 935,900 + Psyr_0826 0.59 -1.3 935,943 + Psyr_0826 0.61 -0.9 936,039 - Psyr_0826 0.67 -0.9 936,039 - Psyr_0826 0.67 +1.1 936,221 - Psyr_0826 0.78 -1.9 936,333 - Psyr_0826 0.85 -0.1 936,333 - Psyr_0826 0.85 -1.5 936,581 + -1.3 936,582 - -0.9 936,605 + +2.2 936,605 + +0.5 936,687 - +2.5 936,710 + -1.9 936,710 + +0.9 936,710 + -1.3 936,710 + -0.5 936,710 + +0.3 936,710 + +0.1 936,711 - -0.2 936,711 - +0.6 936,711 - -2.7 936,711 - -0.4 936,711 - +0.9 936,711 - -1.9 936,711 - +0.1 936,762 + -0.5 936,817 + -1.5 936,817 + -1.9 936,817 + -0.0 936,817 + +0.5 936,818 - -1.9 936,818 - -0.7 936,818 - -0.7 936,818 - -0.9 936,818 - -1.0 936,818 - +0.3 936,818 - +0.5 936,970 - Psyr_0827 0.15 +1.2 937,080 + Psyr_0827 0.28 -1.1 937,081 - Psyr_0827 0.28 -0.3 937,161 - Psyr_0827 0.37 -2.5 937,398 + Psyr_0827 0.65 -1.9 937,482 + Psyr_0827 0.75 +1.9 937,482 + Psyr_0827 0.75 -2.5 937,482 + Psyr_0827 0.75 -1.4 937,483 - Psyr_0827 0.75 -0.1 937,531 + Psyr_0827 0.81 -3.4
Or see this region's nucleotide sequence