Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0723 and Psyr_0724 overlap by 11 nucleotides Psyr_0724 and Psyr_0725 are separated by 120 nucleotides
Psyr_0723: Psyr_0723 - Sensor protein PilS, at 827,353 to 828,945
_0723
Psyr_0724: Psyr_0724 - conserved hypothetical protein, at 828,935 to 829,174
_0724
Psyr_0725: Psyr_0725 - competence lipoprotein ComL, putative, at 829,295 to 830,317
_0725
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.941 kb on - strand, within Psyr_0723 at 827.983 kb on + strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.401 kb on - strand, within Psyr_0723 at 828.401 kb on - strand, within Psyr_0723 at 828.489 kb on - strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.668 kb on - strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.878 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.895 kb on + strand at 828.895 kb on + strand at 828.896 kb on - strand at 828.984 kb on + strand, within Psyr_0724 at 828.984 kb on + strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.186 kb on + strand at 829.209 kb on + strand at 829.245 kb on - strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.599 kb on + strand, within Psyr_0725
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 827,941 - Psyr_0723 0.37 +0.8 827,983 + Psyr_0723 0.40 +1.4 827,984 - Psyr_0723 0.40 +0.8 827,984 - Psyr_0723 0.40 +1.1 827,984 - Psyr_0723 0.40 +0.7 828,268 + Psyr_0723 0.57 +0.4 828,268 + Psyr_0723 0.57 -1.1 828,268 + Psyr_0723 0.57 +2.3 828,269 - Psyr_0723 0.58 -1.8 828,269 - Psyr_0723 0.58 -0.8 828,269 - Psyr_0723 0.58 +0.4 828,269 - Psyr_0723 0.58 -1.0 828,401 - Psyr_0723 0.66 +0.5 828,401 - Psyr_0723 0.66 -1.9 828,489 - Psyr_0723 0.71 -1.7 828,524 + Psyr_0723 0.74 +0.1 828,524 + Psyr_0723 0.74 -1.7 828,524 + Psyr_0723 0.74 +1.6 828,524 + Psyr_0723 0.74 +1.4 828,524 + Psyr_0723 0.74 +2.1 828,524 + Psyr_0723 0.74 +0.3 828,525 - Psyr_0723 0.74 +2.7 828,525 - Psyr_0723 0.74 -1.5 828,525 - Psyr_0723 0.74 -0.6 828,525 - Psyr_0723 0.74 -0.1 828,525 - Psyr_0723 0.74 +0.3 828,525 - Psyr_0723 0.74 -0.6 828,525 - Psyr_0723 0.74 -0.5 828,525 - Psyr_0723 0.74 -0.1 828,525 - Psyr_0723 0.74 -0.8 828,525 - Psyr_0723 0.74 +1.7 828,525 - Psyr_0723 0.74 +0.5 828,536 + Psyr_0723 0.74 +0.8 828,536 + Psyr_0723 0.74 +1.8 828,536 + Psyr_0723 0.74 -1.8 828,536 + Psyr_0723 0.74 +0.2 828,536 + Psyr_0723 0.74 -0.4 828,536 + Psyr_0723 0.74 +0.2 828,537 - Psyr_0723 0.74 +0.1 828,537 - Psyr_0723 0.74 -0.0 828,537 - Psyr_0723 0.74 +0.6 828,537 - Psyr_0723 0.74 -0.8 828,537 - Psyr_0723 0.74 -0.3 828,537 - Psyr_0723 0.74 +0.9 828,537 - Psyr_0723 0.74 +0.7 828,537 - Psyr_0723 0.74 -0.0 828,537 - Psyr_0723 0.74 +1.9 828,662 + Psyr_0723 0.82 +3.3 828,662 + Psyr_0723 0.82 +0.0 828,668 - Psyr_0723 0.83 +0.2 828,770 + Psyr_0723 0.89 +0.1 828,770 + Psyr_0723 0.89 -2.8 828,770 + Psyr_0723 0.89 -1.3 828,770 + Psyr_0723 0.89 -1.7 828,770 + Psyr_0723 0.89 -0.3 828,770 + Psyr_0723 0.89 -0.5 828,771 - Psyr_0723 0.89 -2.8 828,771 - Psyr_0723 0.89 +0.2 828,771 - Psyr_0723 0.89 -2.1 828,771 - Psyr_0723 0.89 -2.7 828,771 - Psyr_0723 0.89 +1.3 828,856 + +0.2 828,856 + +0.8 828,856 + -1.3 828,856 + -2.1 828,856 + +0.3 828,857 - -1.5 828,857 - -0.5 828,857 - -0.1 828,857 - +1.5 828,857 - +1.1 828,878 + +0.8 828,887 + -1.8 828,887 + +0.9 828,887 + +0.6 828,888 - +1.3 828,888 - +0.5 828,888 - -0.5 828,895 + +0.2 828,895 + -1.3 828,896 - -1.7 828,984 + Psyr_0724 0.20 +1.5 828,984 + Psyr_0724 0.20 -1.7 828,985 - Psyr_0724 0.21 -2.0 828,985 - Psyr_0724 0.21 -3.0 829,159 + +0.4 829,159 + +0.6 829,159 + +0.7 829,159 + -3.0 829,159 + +1.4 829,159 + -0.5 829,159 + -1.8 829,159 + +1.1 829,159 + -1.0 829,159 + +0.0 829,159 + +0.2 829,159 + +2.6 829,159 + -1.1 829,159 + +1.5 829,159 + -1.2 829,159 + -0.5 829,159 + +1.6 829,159 + +1.7 829,159 + -1.3 829,159 + -2.2 829,160 - +0.6 829,160 - -0.3 829,160 - -1.1 829,160 - -1.1 829,160 - +2.2 829,160 - -1.1 829,160 - -1.5 829,160 - +0.5 829,160 - +0.6 829,160 - +0.7 829,160 - +0.8 829,160 - -1.5 829,160 - -2.0 829,160 - -0.1 829,160 - +0.7 829,160 - -2.1 829,160 - +1.6 829,160 - +1.6 829,160 - -2.1 829,163 + +1.8 829,163 + -1.1 829,163 + -0.8 829,164 - +1.5 829,164 - -0.8 829,164 - +0.5 829,186 + -2.3 829,209 + -0.1 829,245 - +0.6 829,320 + -0.2 829,320 + +0.8 829,320 + -0.0 829,320 + -0.8 829,320 + -0.3 829,320 + +1.7 829,320 + +2.0 829,320 + -0.4 829,320 + -0.2 829,320 + -2.3 829,320 + -1.3 829,321 - +3.4 829,321 - +2.2 829,321 - -0.1 829,321 - -0.5 829,321 - -1.8 829,321 - -0.1 829,321 - -2.6 829,321 - -2.0 829,321 - +2.1 829,321 - +1.1 829,321 - +1.5 829,321 - -0.9 829,599 + Psyr_0725 0.30 -1.5
Or see this region's nucleotide sequence