Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0676

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0674 and Psyr_0675 are separated by 32 nucleotidesPsyr_0675 and Psyr_0676 are separated by 94 nucleotidesPsyr_0676 and Psyr_0677 are separated by 186 nucleotides Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166 _0674 Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861 _0675 Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353 _0676 Psyr_0677: Psyr_0677 - transcriptional regulator, LysR family, at 767,540 to 768,460 _0677 Position (kb) 765 766 767 768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 765.158 kb on - strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.333 kb on - strand, within Psyr_0675at 765.353 kb on - strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.558 kb on + strand, within Psyr_0675at 765.558 kb on + strand, within Psyr_0675at 765.559 kb on - strand, within Psyr_0675at 765.560 kb on + strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.667 kb on - strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.680 kb on + strand, within Psyr_0675at 765.807 kb on + strandat 765.807 kb on + strandat 765.883 kb on - strandat 765.904 kb on + strandat 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.353 kb on + strand, within Psyr_0676at 766.354 kb on - strand, within Psyr_0676at 766.354 kb on - strand, within Psyr_0676at 766.488 kb on + strand, within Psyr_0676at 766.489 kb on - strand, within Psyr_0676at 766.569 kb on + strand, within Psyr_0676at 766.569 kb on + strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.900 kb on + strand, within Psyr_0676at 767.143 kb on + strand, within Psyr_0676at 767.144 kb on - strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.190 kb on + strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.191 kb on - strand, within Psyr_0676at 767.316 kb on + strandat 767.316 kb on + strandat 767.317 kb on - strandat 767.407 kb on + strandat 767.408 kb on - strandat 767.408 kb on - strandat 767.443 kb on + strandat 767.443 kb on + strandat 767.457 kb on + strandat 767.458 kb on - strandat 767.469 kb on + strandat 767.469 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.532 kb on + strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.533 kb on - strandat 767.691 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.706 kb on + strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.707 kb on - strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.711 kb on + strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.712 kb on - strand, within Psyr_0677at 767.715 kb on + strand, within Psyr_0677at 767.716 kb on - strand, within Psyr_0677at 767.788 kb on - strand, within Psyr_0677at 767.788 kb on - strand, within Psyr_0677at 767.881 kb on - strand, within Psyr_0677at 767.907 kb on + strand, within Psyr_0677at 767.907 kb on + strand, within Psyr_0677at 767.908 kb on - strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.928 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 767.940 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.002 kb on + strand, within Psyr_0677at 768.100 kb on + strand, within Psyr_0677at 768.225 kb on + strand, within Psyr_0677at 768.324 kb on - strand, within Psyr_0677

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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765,158 - -1.5
765,200 + -1.8
765,200 + +1.4
765,200 + -0.1
765,200 + -1.0
765,200 + -1.5
765,201 - +0.8
765,201 - +4.1
765,201 - +1.1
765,201 - -2.2
765,201 - -2.9
765,333 - Psyr_0675 0.20 -1.8
765,353 - Psyr_0675 0.23 -0.9
765,464 + Psyr_0675 0.40 +2.3
765,464 + Psyr_0675 0.40 -0.2
765,558 + Psyr_0675 0.54 +1.6
765,558 + Psyr_0675 0.54 -1.2
765,559 - Psyr_0675 0.54 +2.3
765,560 + Psyr_0675 0.54 +2.1
765,561 - Psyr_0675 0.55 +0.0
765,561 - Psyr_0675 0.55 -0.8
765,561 - Psyr_0675 0.55 -1.8
765,653 + Psyr_0675 0.68 +1.4
765,653 + Psyr_0675 0.68 +0.1
765,653 + Psyr_0675 0.68 +0.9
765,653 + Psyr_0675 0.68 +0.9
765,654 - Psyr_0675 0.69 -0.2
765,654 - Psyr_0675 0.69 -1.1
765,654 - Psyr_0675 0.69 -0.3
765,654 - Psyr_0675 0.69 +0.6
765,667 - Psyr_0675 0.71 -3.3
765,677 + Psyr_0675 0.72 -2.5
765,677 + Psyr_0675 0.72 +2.1
765,677 + Psyr_0675 0.72 +2.1
765,677 + Psyr_0675 0.72 -0.5
765,677 + Psyr_0675 0.72 +0.2
765,677 + Psyr_0675 0.72 -0.5
765,677 + Psyr_0675 0.72 +1.1
765,677 + Psyr_0675 0.72 +0.9
765,677 + Psyr_0675 0.72 +2.6
765,677 + Psyr_0675 0.72 +1.2
765,677 + Psyr_0675 0.72 -2.3
765,677 + Psyr_0675 0.72 -0.8
765,677 + Psyr_0675 0.72 -0.3
765,678 - Psyr_0675 0.72 -0.1
765,678 - Psyr_0675 0.72 -1.5
765,678 - Psyr_0675 0.72 -1.7
765,678 - Psyr_0675 0.72 +0.8
765,678 - Psyr_0675 0.72 -0.1
765,678 - Psyr_0675 0.72 +1.3
765,678 - Psyr_0675 0.72 -2.0
765,678 - Psyr_0675 0.72 -0.8
765,678 - Psyr_0675 0.72 +1.4
765,678 - Psyr_0675 0.72 +1.0
765,680 + Psyr_0675 0.73 -0.2
765,807 + +1.4
765,807 + -0.1
765,883 - +0.5
765,904 + +0.6
766,341 + Psyr_0676 0.28 -0.2
766,341 + Psyr_0676 0.28 +1.5
766,341 + Psyr_0676 0.28 -0.8
766,341 + Psyr_0676 0.28 +0.3
766,341 + Psyr_0676 0.28 +0.8
766,341 + Psyr_0676 0.28 +0.2
766,341 + Psyr_0676 0.28 +1.8
766,341 + Psyr_0676 0.28 +1.2
766,341 + Psyr_0676 0.28 +1.5
766,342 - Psyr_0676 0.28 -1.7
766,342 - Psyr_0676 0.28 +1.7
766,342 - Psyr_0676 0.28 -1.1
766,342 - Psyr_0676 0.28 +0.6
766,342 - Psyr_0676 0.28 -2.6
766,342 - Psyr_0676 0.28 +0.2
766,353 + Psyr_0676 0.28 -0.0
766,354 - Psyr_0676 0.28 -1.3
766,354 - Psyr_0676 0.28 +1.0
766,488 + Psyr_0676 0.38 -1.5
766,489 - Psyr_0676 0.38 +0.8
766,569 + Psyr_0676 0.44 -1.8
766,569 + Psyr_0676 0.44 -2.5
766,570 - Psyr_0676 0.44 -0.8
766,570 - Psyr_0676 0.44 -0.4
766,570 - Psyr_0676 0.44 +0.8
766,570 - Psyr_0676 0.44 -0.9
766,900 + Psyr_0676 0.68 +1.2
767,143 + Psyr_0676 0.85 +1.2
767,144 - Psyr_0676 0.85 +1.4
767,190 + Psyr_0676 0.88 -0.5
767,190 + Psyr_0676 0.88 +1.1
767,190 + Psyr_0676 0.88 -1.6
767,190 + Psyr_0676 0.88 -1.1
767,190 + Psyr_0676 0.88 +1.5
767,190 + Psyr_0676 0.88 +0.7
767,190 + Psyr_0676 0.88 +1.0
767,190 + Psyr_0676 0.88 +2.1
767,190 + Psyr_0676 0.88 -2.6
767,190 + Psyr_0676 0.88 -0.2
767,191 - Psyr_0676 0.88 -0.7
767,191 - Psyr_0676 0.88 +2.4
767,191 - Psyr_0676 0.88 +1.5
767,191 - Psyr_0676 0.88 +1.8
767,191 - Psyr_0676 0.88 +0.9
767,191 - Psyr_0676 0.88 +0.5
767,191 - Psyr_0676 0.88 +0.9
767,191 - Psyr_0676 0.88 +0.3
767,316 + -2.3
767,316 + -2.6
767,317 - -1.5
767,407 + -0.5
767,408 - -0.8
767,408 - -1.2
767,443 + -0.8
767,443 + +3.2
767,457 + +2.4
767,458 - -0.1
767,469 + +1.1
767,469 + +0.6
767,532 + +1.2
767,532 + -1.8
767,532 + -1.5
767,532 + +4.1
767,532 + -0.7
767,533 - -1.5
767,533 - -0.5
767,533 - +1.5
767,533 - +1.3
767,691 + Psyr_0677 0.16 -0.1
767,706 + Psyr_0677 0.18 -2.3
767,706 + Psyr_0677 0.18 +1.3
767,706 + Psyr_0677 0.18 +1.5
767,707 - Psyr_0677 0.18 -1.3
767,707 - Psyr_0677 0.18 +1.0
767,707 - Psyr_0677 0.18 +0.5
767,707 - Psyr_0677 0.18 +2.1
767,711 + Psyr_0677 0.19 +0.7
767,711 + Psyr_0677 0.19 -0.4
767,711 + Psyr_0677 0.19 +1.4
767,711 + Psyr_0677 0.19 -2.4
767,711 + Psyr_0677 0.19 +2.2
767,711 + Psyr_0677 0.19 -2.3
767,711 + Psyr_0677 0.19 +1.3
767,711 + Psyr_0677 0.19 -0.5
767,711 + Psyr_0677 0.19 +2.2
767,711 + Psyr_0677 0.19 +0.6
767,711 + Psyr_0677 0.19 +2.2
767,711 + Psyr_0677 0.19 +1.6
767,711 + Psyr_0677 0.19 -1.2
767,711 + Psyr_0677 0.19 -0.3
767,712 - Psyr_0677 0.19 -0.7
767,712 - Psyr_0677 0.19 -1.3
767,712 - Psyr_0677 0.19 +1.2
767,712 - Psyr_0677 0.19 +1.8
767,712 - Psyr_0677 0.19 -0.2
767,712 - Psyr_0677 0.19 +0.9
767,712 - Psyr_0677 0.19 -1.3
767,712 - Psyr_0677 0.19 -2.7
767,712 - Psyr_0677 0.19 +0.4
767,712 - Psyr_0677 0.19 +0.3
767,712 - Psyr_0677 0.19 -0.2
767,712 - Psyr_0677 0.19 -0.0
767,712 - Psyr_0677 0.19 +0.3
767,712 - Psyr_0677 0.19 -0.7
767,715 + Psyr_0677 0.19 -0.8
767,716 - Psyr_0677 0.19 +1.0
767,788 - Psyr_0677 0.27 -1.2
767,788 - Psyr_0677 0.27 +0.8
767,881 - Psyr_0677 0.37 -1.5
767,907 + Psyr_0677 0.40 +0.5
767,907 + Psyr_0677 0.40 -1.7
767,908 - Psyr_0677 0.40 -0.2
767,928 + Psyr_0677 0.42 +0.2
767,928 + Psyr_0677 0.42 -1.8
767,928 + Psyr_0677 0.42 -1.6
767,940 + Psyr_0677 0.43 +1.0
767,940 + Psyr_0677 0.43 -0.0
767,940 + Psyr_0677 0.43 +1.7
768,002 + Psyr_0677 0.50 +0.2
768,002 + Psyr_0677 0.50 +0.0
768,002 + Psyr_0677 0.50 +0.8
768,100 + Psyr_0677 0.61 -1.2
768,225 + Psyr_0677 0.74 +0.6
768,324 - Psyr_0677 0.85 -0.6

Or see this region's nucleotide sequence