Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0609 and Psyr_0610 are separated by 315 nucleotides Psyr_0610 and Psyr_0611 overlap by 4 nucleotides Psyr_0611 and Psyr_0612 are separated by 66 nucleotides
Psyr_0609: Psyr_0609 - Glutathione S-transferase, C-terminal, at 699,376 to 700,218
_0609
Psyr_0610: Psyr_0610 - ABC-2, at 700,534 to 701,310
_0610
Psyr_0611: Psyr_0611 - ABC transporter, at 701,307 to 702,011
_0611
Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839
_0612
Position (kb) 700
701
702 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 699.545 kb on + strand, within Psyr_0609 at 699.546 kb on - strand, within Psyr_0609 at 699.546 kb on - strand, within Psyr_0609 at 699.572 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.698 kb on + strand, within Psyr_0609 at 699.719 kb on + strand, within Psyr_0609 at 699.720 kb on - strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.726 kb on - strand, within Psyr_0609 at 699.752 kb on + strand, within Psyr_0609 at 699.848 kb on + strand, within Psyr_0609 at 699.848 kb on + strand, within Psyr_0609 at 699.858 kb on + strand, within Psyr_0609 at 699.975 kb on + strand, within Psyr_0609 at 699.975 kb on + strand, within Psyr_0609 at 699.976 kb on - strand, within Psyr_0609 at 699.976 kb on - strand, within Psyr_0609 at 699.995 kb on + strand, within Psyr_0609 at 699.995 kb on + strand, within Psyr_0609 at 700.076 kb on + strand, within Psyr_0609 at 700.076 kb on + strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609 at 700.202 kb on + strand at 700.202 kb on + strand at 700.275 kb on + strand at 700.275 kb on + strand at 700.275 kb on + strand at 700.276 kb on - strand at 700.276 kb on - strand at 700.282 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.284 kb on + strand at 700.285 kb on - strand at 700.285 kb on - strand at 700.285 kb on - strand at 700.285 kb on - strand at 700.285 kb on - strand at 700.285 kb on - strand at 700.294 kb on + strand at 700.295 kb on - strand at 700.295 kb on - strand at 700.331 kb on + strand at 700.380 kb on + strand at 700.396 kb on - strand at 700.409 kb on - strand at 700.410 kb on + strand at 700.410 kb on + strand at 700.410 kb on + strand at 700.410 kb on + strand at 700.411 kb on - strand at 700.411 kb on - strand at 700.411 kb on - strand at 700.417 kb on - strand at 700.425 kb on - strand at 700.437 kb on + strand at 700.437 kb on + strand at 700.437 kb on + strand at 700.437 kb on + strand at 700.438 kb on - strand at 700.438 kb on - strand at 700.438 kb on - strand at 700.438 kb on - strand at 700.438 kb on - strand at 700.438 kb on - strand at 700.461 kb on + strand at 700.461 kb on + strand at 700.461 kb on + strand at 700.461 kb on + strand at 700.462 kb on - strand at 700.518 kb on - strand at 700.521 kb on - strand at 700.534 kb on - strand at 700.615 kb on + strand, within Psyr_0610 at 700.616 kb on - strand, within Psyr_0610 at 700.616 kb on - strand, within Psyr_0610 at 700.639 kb on - strand, within Psyr_0610 at 700.678 kb on + strand, within Psyr_0610 at 700.678 kb on + strand, within Psyr_0610 at 700.678 kb on + strand, within Psyr_0610 at 700.679 kb on - strand, within Psyr_0610 at 700.679 kb on - strand, within Psyr_0610 at 700.682 kb on - strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.696 kb on + strand, within Psyr_0610 at 700.697 kb on - strand, within Psyr_0610 at 700.697 kb on - strand, within Psyr_0610 at 700.697 kb on - strand, within Psyr_0610 at 700.697 kb on - strand, within Psyr_0610 at 700.699 kb on - strand, within Psyr_0610 at 700.699 kb on - strand, within Psyr_0610 at 700.710 kb on + strand, within Psyr_0610 at 700.711 kb on - strand, within Psyr_0610 at 700.916 kb on + strand, within Psyr_0610 at 700.916 kb on + strand, within Psyr_0610 at 700.916 kb on + strand, within Psyr_0610 at 700.917 kb on - strand, within Psyr_0610 at 700.917 kb on - strand, within Psyr_0610 at 700.917 kb on - strand, within Psyr_0610 at 700.961 kb on - strand, within Psyr_0610 at 701.070 kb on - strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.099 kb on + strand, within Psyr_0610 at 701.100 kb on - strand, within Psyr_0610 at 701.100 kb on - strand, within Psyr_0610 at 701.100 kb on - strand, within Psyr_0610 at 701.100 kb on - strand, within Psyr_0610 at 701.146 kb on + strand, within Psyr_0610 at 701.146 kb on + strand, within Psyr_0610 at 701.146 kb on + strand, within Psyr_0610 at 701.146 kb on + strand, within Psyr_0610 at 701.147 kb on - strand, within Psyr_0610 at 701.147 kb on - strand, within Psyr_0610 at 701.147 kb on - strand, within Psyr_0610 at 701.147 kb on - strand, within Psyr_0610 at 701.164 kb on + strand, within Psyr_0610 at 701.165 kb on - strand, within Psyr_0610 at 701.165 kb on - strand, within Psyr_0610 at 701.179 kb on - strand, within Psyr_0610 at 701.302 kb on + strand at 701.302 kb on + strand at 701.302 kb on + strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.303 kb on - strand at 701.306 kb on + strand at 701.306 kb on + strand at 701.306 kb on + strand at 701.307 kb on - strand at 701.307 kb on - strand at 701.307 kb on - strand at 701.307 kb on - strand at 701.452 kb on + strand, within Psyr_0611 at 701.453 kb on - strand, within Psyr_0611 at 701.453 kb on - strand, within Psyr_0611 at 701.453 kb on - strand, within Psyr_0611 at 701.453 kb on - strand, within Psyr_0611 at 701.453 kb on - strand, within Psyr_0611 at 701.516 kb on + strand, within Psyr_0611 at 701.516 kb on + strand, within Psyr_0611 at 701.517 kb on - strand, within Psyr_0611 at 701.517 kb on - strand, within Psyr_0611 at 701.517 kb on - strand, within Psyr_0611 at 701.517 kb on - strand, within Psyr_0611 at 701.517 kb on - strand, within Psyr_0611 at 701.602 kb on + strand, within Psyr_0611 at 701.642 kb on + strand, within Psyr_0611 at 701.643 kb on - strand, within Psyr_0611 at 701.757 kb on + strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.773 kb on - strand, within Psyr_0611 at 701.965 kb on - strand at 702.071 kb on + strand at 702.072 kb on - strand at 702.072 kb on - strand at 702.163 kb on + strand, within Psyr_0612 at 702.163 kb on + strand, within Psyr_0612 at 702.163 kb on + strand, within Psyr_0612 at 702.163 kb on + strand, within Psyr_0612 at 702.163 kb on + strand, within Psyr_0612 at 702.163 kb on + strand, within Psyr_0612 at 702.164 kb on - strand, within Psyr_0612 at 702.164 kb on - strand, within Psyr_0612 at 702.164 kb on - strand, within Psyr_0612 at 702.164 kb on - strand, within Psyr_0612 at 702.233 kb on + strand, within Psyr_0612 at 702.233 kb on + strand, within Psyr_0612 at 702.233 kb on + strand, within Psyr_0612 at 702.233 kb on + strand, within Psyr_0612 at 702.234 kb on - strand, within Psyr_0612 at 702.234 kb on - strand, within Psyr_0612
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 699,545 + Psyr_0609 0.20 -2.5 699,546 - Psyr_0609 0.20 +2.4 699,546 - Psyr_0609 0.20 +1.0 699,572 + Psyr_0609 0.23 -0.6 699,605 + Psyr_0609 0.27 +0.6 699,605 + Psyr_0609 0.27 -2.0 699,605 + Psyr_0609 0.27 -0.3 699,606 - Psyr_0609 0.27 +1.9 699,606 - Psyr_0609 0.27 +0.7 699,606 - Psyr_0609 0.27 -1.2 699,698 + Psyr_0609 0.38 -1.4 699,719 + Psyr_0609 0.41 -0.3 699,720 - Psyr_0609 0.41 +0.4 699,725 + Psyr_0609 0.41 -3.1 699,725 + Psyr_0609 0.41 -0.1 699,725 + Psyr_0609 0.41 +0.5 699,725 + Psyr_0609 0.41 +2.0 699,725 + Psyr_0609 0.41 -0.1 699,725 + Psyr_0609 0.41 +0.4 699,725 + Psyr_0609 0.41 +1.0 699,725 + Psyr_0609 0.41 -1.5 699,726 - Psyr_0609 0.42 -2.6 699,752 + Psyr_0609 0.45 -0.6 699,848 + Psyr_0609 0.56 +0.8 699,848 + Psyr_0609 0.56 +0.8 699,858 + Psyr_0609 0.57 -0.7 699,975 + Psyr_0609 0.71 -3.2 699,975 + Psyr_0609 0.71 +0.5 699,976 - Psyr_0609 0.71 -0.3 699,976 - Psyr_0609 0.71 -0.8 699,995 + Psyr_0609 0.73 -1.4 699,995 + Psyr_0609 0.73 +1.3 700,076 + Psyr_0609 0.83 -0.1 700,076 + Psyr_0609 0.83 +1.7 700,077 - Psyr_0609 0.83 +0.1 700,077 - Psyr_0609 0.83 -1.4 700,077 - Psyr_0609 0.83 +0.2 700,202 + -0.1 700,202 + -1.1 700,275 + +0.6 700,275 + -1.0 700,275 + -0.9 700,276 - +0.2 700,276 - +0.2 700,282 + +1.9 700,284 + -2.3 700,284 + -1.8 700,284 + -0.9 700,284 + +0.1 700,284 + -0.4 700,284 + +1.1 700,284 + +0.2 700,284 + +2.2 700,284 + -2.1 700,285 - +0.6 700,285 - +1.0 700,285 - -3.8 700,285 - -0.1 700,285 - +0.0 700,285 - +2.0 700,294 + -3.0 700,295 - -1.7 700,295 - +0.5 700,331 + -0.9 700,380 + +0.9 700,396 - -0.2 700,409 - +0.0 700,410 + -1.5 700,410 + +0.3 700,410 + +1.6 700,410 + -1.6 700,411 - +0.6 700,411 - +0.3 700,411 - -2.0 700,417 - -0.1 700,425 - +0.3 700,437 + +0.1 700,437 + -3.2 700,437 + +0.9 700,437 + -1.4 700,438 - -0.1 700,438 - +1.9 700,438 - +1.5 700,438 - +1.0 700,438 - +0.7 700,438 - +0.2 700,461 + +1.5 700,461 + -0.4 700,461 + -0.9 700,461 + -0.2 700,462 - -1.1 700,518 - -1.5 700,521 - -1.0 700,534 - +0.7 700,615 + Psyr_0610 0.10 +0.5 700,616 - Psyr_0610 0.11 -0.5 700,616 - Psyr_0610 0.11 +1.2 700,639 - Psyr_0610 0.14 -1.3 700,678 + Psyr_0610 0.19 -2.8 700,678 + Psyr_0610 0.19 +0.2 700,678 + Psyr_0610 0.19 -0.0 700,679 - Psyr_0610 0.19 -1.1 700,679 - Psyr_0610 0.19 -1.7 700,682 - Psyr_0610 0.19 +1.1 700,696 + Psyr_0610 0.21 -2.0 700,696 + Psyr_0610 0.21 -2.3 700,696 + Psyr_0610 0.21 +0.2 700,696 + Psyr_0610 0.21 +1.5 700,696 + Psyr_0610 0.21 -0.8 700,696 + Psyr_0610 0.21 +0.9 700,696 + Psyr_0610 0.21 -2.3 700,697 - Psyr_0610 0.21 -1.7 700,697 - Psyr_0610 0.21 +0.7 700,697 - Psyr_0610 0.21 -0.1 700,697 - Psyr_0610 0.21 -3.0 700,699 - Psyr_0610 0.21 +0.9 700,699 - Psyr_0610 0.21 +1.5 700,710 + Psyr_0610 0.23 +1.8 700,711 - Psyr_0610 0.23 +0.7 700,916 + Psyr_0610 0.49 -1.1 700,916 + Psyr_0610 0.49 -0.2 700,916 + Psyr_0610 0.49 -2.0 700,917 - Psyr_0610 0.49 +1.5 700,917 - Psyr_0610 0.49 -1.7 700,917 - Psyr_0610 0.49 -0.1 700,961 - Psyr_0610 0.55 +0.9 701,070 - Psyr_0610 0.69 +0.8 701,099 + Psyr_0610 0.73 +1.5 701,099 + Psyr_0610 0.73 -3.2 701,099 + Psyr_0610 0.73 -2.2 701,099 + Psyr_0610 0.73 -2.0 701,099 + Psyr_0610 0.73 -1.7 701,099 + Psyr_0610 0.73 -0.9 701,099 + Psyr_0610 0.73 -2.2 701,099 + Psyr_0610 0.73 -3.2 701,100 - Psyr_0610 0.73 -1.2 701,100 - Psyr_0610 0.73 -0.1 701,100 - Psyr_0610 0.73 -1.3 701,100 - Psyr_0610 0.73 -2.7 701,146 + Psyr_0610 0.79 -3.1 701,146 + Psyr_0610 0.79 -1.5 701,146 + Psyr_0610 0.79 -1.1 701,146 + Psyr_0610 0.79 -1.2 701,147 - Psyr_0610 0.79 +1.1 701,147 - Psyr_0610 0.79 -1.3 701,147 - Psyr_0610 0.79 +1.0 701,147 - Psyr_0610 0.79 -1.7 701,164 + Psyr_0610 0.81 -2.0 701,165 - Psyr_0610 0.81 -2.2 701,165 - Psyr_0610 0.81 -1.7 701,179 - Psyr_0610 0.83 -0.1 701,302 + -3.2 701,302 + -1.5 701,302 + -0.8 701,303 - +0.4 701,303 - -0.7 701,303 - -1.6 701,303 - +2.6 701,303 - +0.6 701,303 - -0.8 701,303 - -0.4 701,306 + -1.0 701,306 + -2.6 701,306 + -0.8 701,307 - +2.1 701,307 - -3.1 701,307 - -0.6 701,307 - +1.1 701,452 + Psyr_0611 0.21 -0.1 701,453 - Psyr_0611 0.21 -2.3 701,453 - Psyr_0611 0.21 +3.7 701,453 - Psyr_0611 0.21 -1.6 701,453 - Psyr_0611 0.21 +2.3 701,453 - Psyr_0611 0.21 +0.3 701,516 + Psyr_0611 0.30 -2.5 701,516 + Psyr_0611 0.30 -1.8 701,517 - Psyr_0611 0.30 -0.3 701,517 - Psyr_0611 0.30 -0.1 701,517 - Psyr_0611 0.30 +1.2 701,517 - Psyr_0611 0.30 +1.3 701,517 - Psyr_0611 0.30 +2.4 701,602 + Psyr_0611 0.42 -2.5 701,642 + Psyr_0611 0.48 -2.0 701,643 - Psyr_0611 0.48 -1.5 701,757 + Psyr_0611 0.64 -1.5 701,773 - Psyr_0611 0.66 -1.5 701,773 - Psyr_0611 0.66 -0.1 701,773 - Psyr_0611 0.66 -2.1 701,773 - Psyr_0611 0.66 +1.0 701,773 - Psyr_0611 0.66 -0.3 701,773 - Psyr_0611 0.66 +1.0 701,965 - +0.3 702,071 + +1.3 702,072 - -0.4 702,072 - -0.2 702,163 + Psyr_0612 0.11 +2.0 702,163 + Psyr_0612 0.11 -0.5 702,163 + Psyr_0612 0.11 +0.6 702,163 + Psyr_0612 0.11 -0.7 702,163 + Psyr_0612 0.11 +1.2 702,163 + Psyr_0612 0.11 +0.3 702,164 - Psyr_0612 0.11 +0.6 702,164 - Psyr_0612 0.11 -0.5 702,164 - Psyr_0612 0.11 -1.8 702,164 - Psyr_0612 0.11 -1.6 702,233 + Psyr_0612 0.20 -0.4 702,233 + Psyr_0612 0.20 +0.8 702,233 + Psyr_0612 0.20 +0.2 702,233 + Psyr_0612 0.20 +0.3 702,234 - Psyr_0612 0.20 +1.7 702,234 - Psyr_0612 0.20 -1.6
Or see this region's nucleotide sequence