Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0452 and Psyr_0453 are separated by 106 nucleotides Psyr_0453 and Psyr_0454 are separated by 131 nucleotides Psyr_0454 and Psyr_0455 are separated by 209 nucleotides
Psyr_0452: Psyr_0452 - HylII, at 487,976 to 488,590
_0452
Psyr_0453: Psyr_0453 - 16S rRNA m(3)U-1498 methyltransferase, at 488,697 to 489,416
_0453
Psyr_0454: Psyr_0454 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme, at 489,548 to 490,954
_0454
Psyr_0455: Psyr_0455 - Amine oxidase, at 491,164 to 493,038
_0455
Position (kb) 489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 488.579 kb on + strand at 488.579 kb on + strand at 488.579 kb on + strand at 488.580 kb on - strand at 488.580 kb on - strand at 489.098 kb on + strand, within Psyr_0453 at 489.099 kb on - strand, within Psyr_0453 at 489.099 kb on - strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.340 kb on + strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.341 kb on - strand, within Psyr_0453 at 489.549 kb on + strand at 489.678 kb on + strand at 489.679 kb on - strand at 489.679 kb on - strand at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.694 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 489.991 kb on - strand, within Psyr_0454 at 490.035 kb on + strand, within Psyr_0454 at 490.035 kb on + strand, within Psyr_0454 at 490.048 kb on - strand, within Psyr_0454 at 490.087 kb on - strand, within Psyr_0454 at 490.087 kb on - strand, within Psyr_0454 at 490.245 kb on + strand, within Psyr_0454 at 490.245 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.257 kb on + strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.258 kb on - strand, within Psyr_0454 at 490.402 kb on - strand, within Psyr_0454 at 490.450 kb on - strand, within Psyr_0454 at 491.010 kb on + strand at 491.051 kb on - strand at 491.077 kb on + strand at 491.133 kb on + strand at 491.134 kb on - strand at 491.134 kb on - strand at 491.142 kb on + strand at 491.143 kb on - strand at 491.199 kb on - strand at 491.293 kb on + strand at 491.294 kb on - strand at 491.479 kb on + strand, within Psyr_0455 at 491.480 kb on - strand, within Psyr_0455 at 491.480 kb on - strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.497 kb on + strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.498 kb on - strand, within Psyr_0455 at 491.557 kb on + strand, within Psyr_0455 at 491.558 kb on - strand, within Psyr_0455 at 491.558 kb on - strand, within Psyr_0455 at 491.756 kb on - strand, within Psyr_0455 at 491.780 kb on - strand, within Psyr_0455 at 491.947 kb on + strand, within Psyr_0455 at 491.947 kb on + strand, within Psyr_0455 at 491.947 kb on + strand, within Psyr_0455 at 491.947 kb on + strand, within Psyr_0455 at 491.947 kb on + strand, within Psyr_0455 at 491.948 kb on - strand, within Psyr_0455
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 488,579 + -2.1 488,579 + +0.7 488,579 + -1.1 488,580 - +1.2 488,580 - -1.9 489,098 + Psyr_0453 0.56 -3.7 489,099 - Psyr_0453 0.56 -0.4 489,099 - Psyr_0453 0.56 +1.4 489,340 + Psyr_0453 0.89 +2.8 489,340 + Psyr_0453 0.89 +0.6 489,340 + Psyr_0453 0.89 -2.4 489,340 + Psyr_0453 0.89 +0.2 489,340 + Psyr_0453 0.89 +0.9 489,340 + Psyr_0453 0.89 -0.2 489,340 + Psyr_0453 0.89 -0.3 489,340 + Psyr_0453 0.89 +0.4 489,341 - Psyr_0453 0.89 -0.6 489,341 - Psyr_0453 0.89 -1.9 489,341 - Psyr_0453 0.89 -1.3 489,341 - Psyr_0453 0.89 -0.3 489,341 - Psyr_0453 0.89 -2.7 489,341 - Psyr_0453 0.89 +1.0 489,549 + -0.9 489,678 + +0.1 489,679 - -0.9 489,679 - -1.6 489,694 - Psyr_0454 0.10 -1.5 489,694 - Psyr_0454 0.10 -2.0 489,694 - Psyr_0454 0.10 +1.7 489,694 - Psyr_0454 0.10 -1.8 489,694 - Psyr_0454 0.10 -0.5 489,991 - Psyr_0454 0.31 -1.3 489,991 - Psyr_0454 0.31 -0.3 489,991 - Psyr_0454 0.31 +0.1 489,991 - Psyr_0454 0.31 +0.1 490,035 + Psyr_0454 0.35 +0.1 490,035 + Psyr_0454 0.35 -0.6 490,048 - Psyr_0454 0.36 -0.9 490,087 - Psyr_0454 0.38 -0.3 490,087 - Psyr_0454 0.38 -1.9 490,245 + Psyr_0454 0.50 -0.3 490,245 + Psyr_0454 0.50 -1.1 490,257 + Psyr_0454 0.50 -0.6 490,257 + Psyr_0454 0.50 -0.4 490,257 + Psyr_0454 0.50 +0.5 490,258 - Psyr_0454 0.50 +4.8 490,258 - Psyr_0454 0.50 +0.7 490,258 - Psyr_0454 0.50 -1.9 490,258 - Psyr_0454 0.50 -2.2 490,258 - Psyr_0454 0.50 -0.9 490,258 - Psyr_0454 0.50 +1.7 490,402 - Psyr_0454 0.61 -2.3 490,450 - Psyr_0454 0.64 -0.3 491,010 + +0.8 491,051 - +1.4 491,077 + -1.5 491,133 + +2.6 491,134 - -2.1 491,134 - +1.1 491,142 + -1.3 491,143 - +2.7 491,199 - +0.1 491,293 + -1.9 491,294 - +1.0 491,479 + Psyr_0455 0.17 +1.7 491,480 - Psyr_0455 0.17 +2.0 491,480 - Psyr_0455 0.17 -0.8 491,497 + Psyr_0455 0.18 -0.9 491,497 + Psyr_0455 0.18 +1.6 491,497 + Psyr_0455 0.18 +0.7 491,497 + Psyr_0455 0.18 +2.3 491,497 + Psyr_0455 0.18 -0.3 491,497 + Psyr_0455 0.18 -0.8 491,497 + Psyr_0455 0.18 +1.2 491,498 - Psyr_0455 0.18 -0.3 491,498 - Psyr_0455 0.18 +0.6 491,498 - Psyr_0455 0.18 +0.3 491,498 - Psyr_0455 0.18 +1.2 491,498 - Psyr_0455 0.18 -1.5 491,498 - Psyr_0455 0.18 +0.0 491,498 - Psyr_0455 0.18 +0.2 491,498 - Psyr_0455 0.18 -0.9 491,557 + Psyr_0455 0.21 -2.0 491,558 - Psyr_0455 0.21 -0.9 491,558 - Psyr_0455 0.21 +2.3 491,756 - Psyr_0455 0.32 +1.2 491,780 - Psyr_0455 0.33 -1.1 491,947 + Psyr_0455 0.42 -0.3 491,947 + Psyr_0455 0.42 +0.1 491,947 + Psyr_0455 0.42 -0.2 491,947 + Psyr_0455 0.42 +2.8 491,947 + Psyr_0455 0.42 +1.0 491,948 - Psyr_0455 0.42 -0.6
Or see this region's nucleotide sequence