Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0160 and Psyr_0161 are separated by 298 nucleotides Psyr_0161 and Psyr_0162 are separated by 441 nucleotides
Psyr_0160: Psyr_0160 - GCN5-related N-acetyltransferase, at 174,758 to 175,615
_0160
Psyr_0161: Psyr_0161 - Protein of unknown function DUF861, at 175,914 to 176,627
_0161
Psyr_0162: Psyr_0162 - hypothetical protein, at 177,069 to 177,518
_0162
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 175.182 kb on + strand, within Psyr_0160 at 175.182 kb on + strand, within Psyr_0160 at 175.183 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.462 kb on + strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.671 kb on + strand at 175.693 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.720 kb on + strand at 175.721 kb on - strand at 175.752 kb on + strand at 175.752 kb on + strand at 175.753 kb on - strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.854 kb on - strand at 176.097 kb on + strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.216 kb on + strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.599 kb on - strand at 176.599 kb on - strand at 176.614 kb on - strand at 176.614 kb on - strand at 176.636 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.721 kb on - strand at 176.802 kb on - strand at 176.873 kb on + strand at 176.906 kb on + strand at 176.906 kb on + strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.988 kb on + strand at 177.046 kb on - strand at 177.049 kb on + strand at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.284 kb on + strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.319 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.422 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.483 kb on - strand at 177.516 kb on + strand at 177.516 kb on + strand at 177.537 kb on - strand at 177.544 kb on + strand at 177.545 kb on - strand at 177.573 kb on + strand at 177.573 kb on + strand at 177.574 kb on - strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.604 kb on - strand at 177.610 kb on + strand at 177.610 kb on + strand at 177.611 kb on - strand at 177.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 175,182 + Psyr_0160 0.49 +1.3 175,182 + Psyr_0160 0.49 -1.2 175,183 - Psyr_0160 0.50 -0.0 175,449 - Psyr_0160 0.81 -1.1 175,449 - Psyr_0160 0.81 -0.2 175,449 - Psyr_0160 0.81 +2.0 175,458 + Psyr_0160 0.82 +0.9 175,458 + Psyr_0160 0.82 -0.5 175,458 + Psyr_0160 0.82 -2.2 175,459 - Psyr_0160 0.82 -0.7 175,459 - Psyr_0160 0.82 -0.9 175,459 - Psyr_0160 0.82 +1.8 175,459 - Psyr_0160 0.82 +0.6 175,459 - Psyr_0160 0.82 -0.1 175,462 + Psyr_0160 0.82 -1.9 175,463 - Psyr_0160 0.82 -0.2 175,463 - Psyr_0160 0.82 -0.3 175,463 - Psyr_0160 0.82 -0.9 175,671 + -0.7 175,693 + -1.1 175,695 + -1.9 175,695 + +0.3 175,695 + -2.0 175,695 + -1.2 175,695 + -0.6 175,695 + +1.2 175,695 + -1.9 175,695 + +1.1 175,695 + +0.3 175,695 + -1.4 175,695 + -2.4 175,695 + -0.1 175,695 + -1.0 175,696 - +1.8 175,696 - -2.5 175,696 - +4.3 175,696 - +0.0 175,696 - +1.3 175,696 - +0.8 175,696 - +2.2 175,696 - -2.1 175,696 - +2.1 175,696 - +0.8 175,696 - -0.6 175,696 - -1.1 175,696 - +0.1 175,696 - +1.0 175,696 - -0.3 175,696 - -0.7 175,696 - -0.8 175,699 + -2.3 175,699 + -1.3 175,699 + -1.8 175,699 + -0.9 175,699 + +1.1 175,699 + -0.5 175,699 + -1.3 175,699 + +1.8 175,699 + -0.6 175,699 + -0.0 175,699 + +1.3 175,699 + +1.3 175,699 + -0.6 175,699 + +1.7 175,699 + +1.5 175,699 + +0.7 175,699 + +2.0 175,699 + +0.2 175,699 + +0.4 175,699 + -1.7 175,699 + -2.1 175,699 + +1.1 175,699 + -1.7 175,699 + -0.7 175,700 - -0.4 175,700 - -1.6 175,700 - -0.8 175,700 - -1.5 175,700 - -1.3 175,700 - -0.6 175,700 - +0.9 175,700 - +0.6 175,700 - -0.9 175,700 - -0.6 175,700 - -2.8 175,700 - -0.4 175,700 - -0.6 175,700 - +0.3 175,700 - +1.7 175,700 - +1.2 175,700 - +1.1 175,700 - +1.0 175,700 - -1.4 175,700 - -0.0 175,700 - +0.3 175,700 - -0.6 175,720 + +2.4 175,721 - +3.1 175,752 + -2.4 175,752 + +1.3 175,753 - -1.0 175,851 + +2.4 175,851 + -1.9 175,851 + -2.0 175,851 + -2.7 175,851 + -0.1 175,851 + -1.1 175,851 + -0.6 175,851 + -0.4 175,852 - +1.2 175,852 - -2.7 175,852 - -3.2 175,852 - +0.2 175,854 - -0.0 176,097 + Psyr_0161 0.26 +0.7 176,104 - Psyr_0161 0.27 +0.6 176,104 - Psyr_0161 0.27 +0.4 176,212 + Psyr_0161 0.42 +1.0 176,212 + Psyr_0161 0.42 +0.1 176,212 + Psyr_0161 0.42 -1.5 176,212 + Psyr_0161 0.42 -1.1 176,212 + Psyr_0161 0.42 +0.4 176,212 + Psyr_0161 0.42 -1.8 176,212 + Psyr_0161 0.42 -1.1 176,212 + Psyr_0161 0.42 +1.6 176,212 + Psyr_0161 0.42 -1.2 176,212 + Psyr_0161 0.42 -1.6 176,212 + Psyr_0161 0.42 -2.5 176,212 + Psyr_0161 0.42 -0.8 176,212 + Psyr_0161 0.42 -0.1 176,213 - Psyr_0161 0.42 +0.1 176,213 - Psyr_0161 0.42 -1.0 176,213 - Psyr_0161 0.42 +0.5 176,213 - Psyr_0161 0.42 +0.1 176,213 - Psyr_0161 0.42 -2.2 176,213 - Psyr_0161 0.42 -1.2 176,216 + Psyr_0161 0.42 +1.5 176,217 - Psyr_0161 0.42 +0.8 176,217 - Psyr_0161 0.42 -3.3 176,598 + -3.2 176,598 + +0.7 176,598 + -0.9 176,598 + +1.7 176,598 + -0.7 176,598 + +1.1 176,598 + +1.7 176,599 - +2.9 176,599 - +0.8 176,614 - +0.9 176,614 - -0.5 176,636 + +0.6 176,683 + -1.1 176,683 + -1.5 176,684 - +1.1 176,684 - -1.9 176,684 - +2.5 176,721 - -1.9 176,802 - +1.5 176,873 + +1.4 176,906 + +0.2 176,906 + +1.3 176,907 - -1.5 176,907 - -1.8 176,907 - +0.6 176,907 - +1.0 176,946 + +0.4 176,946 + -1.9 176,946 + +1.1 176,946 + +1.3 176,947 - -0.4 176,947 - -1.3 176,947 - +0.5 176,947 - -0.3 176,988 + +0.9 177,046 - -0.9 177,049 + +0.1 177,194 + Psyr_0162 0.28 +0.6 177,194 + Psyr_0162 0.28 +1.1 177,194 + Psyr_0162 0.28 -1.9 177,194 + Psyr_0162 0.28 +1.0 177,194 + Psyr_0162 0.28 +1.1 177,194 + Psyr_0162 0.28 -2.6 177,195 - Psyr_0162 0.28 +0.6 177,195 - Psyr_0162 0.28 -0.3 177,282 + Psyr_0162 0.47 +1.7 177,282 + Psyr_0162 0.47 -1.6 177,283 - Psyr_0162 0.48 -0.6 177,283 - Psyr_0162 0.48 +1.2 177,283 - Psyr_0162 0.48 -1.2 177,284 + Psyr_0162 0.48 -0.9 177,285 - Psyr_0162 0.48 +0.0 177,285 - Psyr_0162 0.48 -0.3 177,318 + Psyr_0162 0.55 -0.3 177,318 + Psyr_0162 0.55 +0.6 177,319 - Psyr_0162 0.56 +1.0 177,334 - Psyr_0162 0.59 -1.1 177,334 - Psyr_0162 0.59 -2.1 177,352 + Psyr_0162 0.63 +1.6 177,352 + Psyr_0162 0.63 +0.4 177,352 + Psyr_0162 0.63 +1.5 177,352 + Psyr_0162 0.63 +0.8 177,352 + Psyr_0162 0.63 +2.0 177,352 + Psyr_0162 0.63 -2.6 177,352 + Psyr_0162 0.63 +1.7 177,352 + Psyr_0162 0.63 +1.7 177,352 + Psyr_0162 0.63 -0.3 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 +1.3 177,352 + Psyr_0162 0.63 -0.5 177,353 - Psyr_0162 0.63 -0.2 177,353 - Psyr_0162 0.63 -0.7 177,353 - Psyr_0162 0.63 -0.9 177,353 - Psyr_0162 0.63 +0.8 177,353 - Psyr_0162 0.63 +1.7 177,377 - Psyr_0162 0.68 -0.4 177,377 - Psyr_0162 0.68 +0.7 177,422 + Psyr_0162 0.78 -0.1 177,458 + Psyr_0162 0.86 -0.6 177,458 + Psyr_0162 0.86 +0.9 177,458 + Psyr_0162 0.86 +0.3 177,459 - Psyr_0162 0.87 -2.4 177,459 - Psyr_0162 0.87 -0.3 177,459 - Psyr_0162 0.87 +1.3 177,459 - Psyr_0162 0.87 -0.2 177,459 - Psyr_0162 0.87 +0.4 177,483 - +1.7 177,516 + +0.1 177,516 + -1.7 177,537 - -0.3 177,544 + +0.2 177,545 - -0.2 177,573 + -0.0 177,573 + -3.1 177,574 - +2.0 177,599 + -0.1 177,599 + +0.9 177,599 + +0.1 177,599 + +2.3 177,599 + -1.9 177,599 + +0.3 177,599 + +0.2 177,599 + +1.1 177,599 + -1.9 177,599 + -2.2 177,600 - -1.3 177,600 - +1.2 177,600 - -0.3 177,600 - -0.6 177,600 - -2.2 177,600 - +1.9 177,604 - +0.8 177,610 + -3.7 177,610 + -0.9 177,611 - +0.4 177,611 - +2.5
Or see this region's nucleotide sequence