Experiment: apoplastic, chopping recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0012 and Psyr_0013 are separated by 20 nucleotides Psyr_0013 and Psyr_0014 are separated by 38 nucleotides Psyr_0014 and Psyr_0015 are separated by 339 nucleotides
Psyr_0012: Psyr_0012 - glycyl-tRNA synthetase alpha chain, at 13,967 to 14,974
_0012
Psyr_0013: Psyr_0013 - DNA-3-methyladenine glycosylase I, at 14,995 to 15,546
_0013
Psyr_0014: Psyr_0014 - lipid A biosynthesis acyltransferase, at 15,585 to 16,472
_0014
Psyr_0015: Psyr_0015 - Oxidoreductase alpha (molybdopterin) subunit, at 16,812 to 19,175
_0015
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.956 kb on - strand at 14.956 kb on - strand at 14.994 kb on + strand at 15.031 kb on + strand at 15.031 kb on + strand at 15.031 kb on + strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.032 kb on - strand at 15.040 kb on + strand at 15.040 kb on + strand at 15.040 kb on + strand at 15.040 kb on + strand at 15.041 kb on - strand at 15.041 kb on - strand at 15.170 kb on + strand, within Psyr_0013 at 15.171 kb on - strand, within Psyr_0013 at 15.171 kb on - strand, within Psyr_0013 at 15.171 kb on - strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.475 kb on + strand, within Psyr_0013 at 15.476 kb on - strand, within Psyr_0013 at 15.476 kb on - strand, within Psyr_0013 at 15.591 kb on - strand at 15.975 kb on + strand, within Psyr_0014 at 15.975 kb on + strand, within Psyr_0014 at 16.302 kb on - strand, within Psyr_0014 at 16.302 kb on - strand, within Psyr_0014 at 16.302 kb on - strand, within Psyr_0014 at 16.335 kb on + strand, within Psyr_0014 at 16.335 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.336 kb on - strand, within Psyr_0014 at 16.389 kb on + strand at 16.389 kb on + strand at 16.413 kb on + strand at 16.413 kb on + strand at 16.413 kb on + strand at 16.413 kb on + strand at 16.414 kb on - strand at 16.414 kb on - strand at 16.467 kb on + strand at 16.467 kb on + strand at 16.470 kb on + strand at 16.471 kb on - strand at 16.471 kb on - strand at 16.471 kb on - strand at 16.550 kb on - strand at 16.550 kb on - strand at 16.550 kb on - strand at 16.550 kb on - strand at 16.631 kb on + strand at 16.631 kb on + strand at 16.632 kb on - strand at 16.683 kb on - strand at 16.701 kb on + strand at 16.701 kb on + strand at 16.701 kb on + strand at 16.701 kb on + strand at 16.702 kb on - strand at 16.702 kb on - strand at 16.702 kb on - strand at 16.778 kb on + strand at 16.778 kb on + strand at 16.779 kb on - strand at 16.913 kb on + strand at 16.945 kb on - strand at 16.967 kb on - strand at 16.970 kb on - strand at 17.068 kb on + strand, within Psyr_0015 at 17.068 kb on + strand, within Psyr_0015 at 17.069 kb on - strand, within Psyr_0015 at 17.069 kb on - strand, within Psyr_0015 at 17.167 kb on + strand, within Psyr_0015 at 17.167 kb on + strand, within Psyr_0015 at 17.167 kb on + strand, within Psyr_0015 at 17.167 kb on + strand, within Psyr_0015 at 17.251 kb on + strand, within Psyr_0015 at 17.251 kb on + strand, within Psyr_0015 at 17.251 kb on + strand, within Psyr_0015 at 17.252 kb on - strand, within Psyr_0015 at 17.252 kb on - strand, within Psyr_0015 at 17.252 kb on - strand, within Psyr_0015 at 17.252 kb on - strand, within Psyr_0015 at 17.255 kb on + strand, within Psyr_0015 at 17.255 kb on + strand, within Psyr_0015 at 17.255 kb on + strand, within Psyr_0015 at 17.255 kb on + strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.256 kb on - strand, within Psyr_0015 at 17.368 kb on + strand, within Psyr_0015 at 17.368 kb on + strand, within Psyr_0015 at 17.385 kb on + strand, within Psyr_0015 at 17.385 kb on + strand, within Psyr_0015 at 17.386 kb on - strand, within Psyr_0015 at 17.416 kb on + strand, within Psyr_0015 at 17.417 kb on - strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.428 kb on + strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015 at 17.429 kb on - strand, within Psyr_0015
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean remove 14,956 - +2.7 14,956 - -1.2 14,994 + -1.2 15,031 + +0.1 15,031 + -1.4 15,031 + -0.0 15,032 - -1.0 15,032 - -1.4 15,032 - +1.0 15,032 - -2.3 15,032 - +1.4 15,032 - -0.5 15,032 - -1.3 15,032 - +0.5 15,032 - +0.5 15,040 + +0.4 15,040 + +0.7 15,040 + -1.0 15,040 + -1.3 15,041 - +1.1 15,041 - +0.6 15,170 + Psyr_0013 0.32 +0.4 15,171 - Psyr_0013 0.32 +1.1 15,171 - Psyr_0013 0.32 -0.9 15,171 - Psyr_0013 0.32 +0.6 15,475 + Psyr_0013 0.87 -1.3 15,475 + Psyr_0013 0.87 +0.5 15,475 + Psyr_0013 0.87 -2.8 15,475 + Psyr_0013 0.87 -2.6 15,475 + Psyr_0013 0.87 +1.0 15,475 + Psyr_0013 0.87 +0.6 15,475 + Psyr_0013 0.87 -0.5 15,476 - Psyr_0013 0.87 -0.0 15,476 - Psyr_0013 0.87 +0.8 15,591 - -0.8 15,975 + Psyr_0014 0.44 -1.1 15,975 + Psyr_0014 0.44 -2.0 16,302 - Psyr_0014 0.81 -0.3 16,302 - Psyr_0014 0.81 +1.0 16,302 - Psyr_0014 0.81 -1.5 16,335 + Psyr_0014 0.84 -1.3 16,335 - Psyr_0014 0.84 -1.1 16,336 - Psyr_0014 0.85 -1.3 16,336 - Psyr_0014 0.85 -1.8 16,336 - Psyr_0014 0.85 -1.1 16,336 - Psyr_0014 0.85 +0.1 16,336 - Psyr_0014 0.85 -2.4 16,336 - Psyr_0014 0.85 -1.1 16,389 + +2.2 16,389 + -0.7 16,413 + +0.2 16,413 + +0.7 16,413 + -2.0 16,413 + -1.2 16,414 - -0.0 16,414 - +0.7 16,467 + -2.7 16,467 + +1.5 16,470 + +0.8 16,471 - -1.8 16,471 - +0.5 16,471 - +0.1 16,550 - -1.2 16,550 - -1.9 16,550 - +0.0 16,550 - +1.4 16,631 + -1.8 16,631 + +0.2 16,632 - +2.2 16,683 - -0.9 16,701 + +0.3 16,701 + -2.9 16,701 + +0.5 16,701 + +0.3 16,702 - -3.6 16,702 - -3.7 16,702 - +0.1 16,778 + +0.5 16,778 + -0.9 16,779 - -1.5 16,913 + +0.4 16,945 - -0.1 16,967 - +0.2 16,970 - +0.0 17,068 + Psyr_0015 0.11 -1.6 17,068 + Psyr_0015 0.11 -0.4 17,069 - Psyr_0015 0.11 -0.9 17,069 - Psyr_0015 0.11 +1.1 17,167 + Psyr_0015 0.15 +0.7 17,167 + Psyr_0015 0.15 -0.1 17,167 + Psyr_0015 0.15 +0.9 17,167 + Psyr_0015 0.15 -0.8 17,251 + Psyr_0015 0.19 -2.5 17,251 + Psyr_0015 0.19 +0.1 17,251 + Psyr_0015 0.19 +0.2 17,252 - Psyr_0015 0.19 +1.5 17,252 - Psyr_0015 0.19 -1.6 17,252 - Psyr_0015 0.19 +1.2 17,252 - Psyr_0015 0.19 +1.2 17,255 + Psyr_0015 0.19 +1.1 17,255 + Psyr_0015 0.19 +1.2 17,255 + Psyr_0015 0.19 +0.5 17,255 + Psyr_0015 0.19 +0.7 17,256 - Psyr_0015 0.19 -0.8 17,256 - Psyr_0015 0.19 +1.5 17,256 - Psyr_0015 0.19 +0.4 17,256 - Psyr_0015 0.19 +1.7 17,256 - Psyr_0015 0.19 +0.1 17,256 - Psyr_0015 0.19 +0.3 17,256 - Psyr_0015 0.19 +1.5 17,256 - Psyr_0015 0.19 -3.6 17,368 + Psyr_0015 0.24 +1.4 17,368 + Psyr_0015 0.24 +0.8 17,385 + Psyr_0015 0.24 +0.5 17,385 + Psyr_0015 0.24 +1.8 17,386 - Psyr_0015 0.24 +0.8 17,416 + Psyr_0015 0.26 +1.9 17,417 - Psyr_0015 0.26 +0.4 17,428 + Psyr_0015 0.26 -3.1 17,428 + Psyr_0015 0.26 -1.7 17,428 + Psyr_0015 0.26 -1.0 17,428 + Psyr_0015 0.26 +1.7 17,428 + Psyr_0015 0.26 -1.1 17,428 + Psyr_0015 0.26 +0.0 17,428 + Psyr_0015 0.26 -1.2 17,428 + Psyr_0015 0.26 +0.1 17,428 + Psyr_0015 0.26 +3.0 17,428 + Psyr_0015 0.26 +0.7 17,428 + Psyr_0015 0.26 -0.7 17,428 + Psyr_0015 0.26 -1.2 17,428 + Psyr_0015 0.26 -0.9 17,428 + Psyr_0015 0.26 +1.7 17,428 + Psyr_0015 0.26 +0.7 17,428 + Psyr_0015 0.26 -0.3 17,428 + Psyr_0015 0.26 +0.6 17,428 + Psyr_0015 0.26 -2.0 17,428 + Psyr_0015 0.26 -0.0 17,428 + Psyr_0015 0.26 -1.0 17,428 + Psyr_0015 0.26 -0.2 17,428 + Psyr_0015 0.26 +0.7 17,428 + Psyr_0015 0.26 +1.8 17,428 + Psyr_0015 0.26 +0.5 17,428 + Psyr_0015 0.26 -1.2 17,428 + Psyr_0015 0.26 -0.4 17,428 + Psyr_0015 0.26 -1.3 17,428 + Psyr_0015 0.26 -1.5 17,428 + Psyr_0015 0.26 +3.3 17,428 + Psyr_0015 0.26 +0.2 17,429 - Psyr_0015 0.26 -1.3 17,429 - Psyr_0015 0.26 +0.8 17,429 - Psyr_0015 0.26 +0.7 17,429 - Psyr_0015 0.26 -0.9 17,429 - Psyr_0015 0.26 +1.1 17,429 - Psyr_0015 0.26 -2.4 17,429 - Psyr_0015 0.26 -0.9 17,429 - Psyr_0015 0.26 +0.4 17,429 - Psyr_0015 0.26 +1.6 17,429 - Psyr_0015 0.26 +2.4 17,429 - Psyr_0015 0.26 +1.7 17,429 - Psyr_0015 0.26 +0.4 17,429 - Psyr_0015 0.26 +0.6 17,429 - Psyr_0015 0.26 +0.8 17,429 - Psyr_0015 0.26 +1.4 17,429 - Psyr_0015 0.26 +1.2 17,429 - Psyr_0015 0.26 -1.9 17,429 - Psyr_0015 0.26 -0.7 17,429 - Psyr_0015 0.26 -0.3 17,429 - Psyr_0015 0.26 +0.4 17,429 - Psyr_0015 0.26 -0.4 17,429 - Psyr_0015 0.26 -0.1 17,429 - Psyr_0015 0.26 +1.4 17,429 - Psyr_0015 0.26 -0.6
Or see this region's nucleotide sequence