Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08295

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
1,528,138	+		MMJJ_RS08290	0.23	+0.3
1,528,159	+		MMJJ_RS08290	0.25	+0.8
1,528,224	+		MMJJ_RS08290	0.30	+0.5
1,528,286	-		MMJJ_RS08290	0.36	+0.7
1,528,307	-		MMJJ_RS08290	0.38	-0.1
1,528,308	+		MMJJ_RS08290	0.38	+0.5
1,528,319	+		MMJJ_RS08290	0.39	-1.9
1,528,337	+		MMJJ_RS08290	0.40	-2.1
1,528,362	-		MMJJ_RS08290	0.43	+0.3
1,528,362	-		MMJJ_RS08290	0.43	-0.3
1,528,362	-		MMJJ_RS08290	0.43	-2.4
1,528,367	+		MMJJ_RS08290	0.43	+0.7
1,528,376	+		MMJJ_RS08290	0.44	+1.2
1,528,410	+		MMJJ_RS08290	0.47	-1.3
1,528,433	+		MMJJ_RS08290	0.49	-1.5
1,528,443	+		MMJJ_RS08290	0.50	-0.3
1,528,503	+		MMJJ_RS08290	0.55	-0.6
1,528,537	+		MMJJ_RS08290	0.58	-0.4
1,528,545	+		MMJJ_RS08290	0.59	-0.8
1,528,547	-		MMJJ_RS08290	0.59	-0.8
1,528,547	-		MMJJ_RS08290	0.59	+0.3
1,528,547	-		MMJJ_RS08290	0.59	-1.2
1,528,547	-		MMJJ_RS08290	0.59	+0.9
1,528,548	+		MMJJ_RS08290	0.59	+1.9
1,528,548	+		MMJJ_RS08290	0.59	+1.7
1,528,588	-		MMJJ_RS08290	0.63	+0.9
1,528,588	-		MMJJ_RS08290	0.63	+1.2
1,528,588	-		MMJJ_RS08290	0.63	+1.7
1,528,588	-		MMJJ_RS08290	0.63	-1.5
1,528,588	-		MMJJ_RS08290	0.63	+0.8
1,528,589	+		MMJJ_RS08290	0.63	+0.3
1,528,602	-		MMJJ_RS08290	0.64	-1.2
1,528,602	-		MMJJ_RS08290	0.64	+0.0
1,528,602	-		MMJJ_RS08290	0.64	+2.1
1,528,603	+		MMJJ_RS08290	0.64	-0.3
1,528,603	+		MMJJ_RS08290	0.64	+0.6
1,528,603	+		MMJJ_RS08290	0.64	+0.5
1,528,603	+		MMJJ_RS08290	0.64	+0.9
1,528,603	+		MMJJ_RS08290	0.64	-0.9
1,528,603	+		MMJJ_RS08290	0.64	-0.3
1,528,603	+		MMJJ_RS08290	0.64	-0.0
1,528,608	+		MMJJ_RS08290	0.65	+2.5
1,528,613	-		MMJJ_RS08290	0.65	-1.3
1,528,613	-		MMJJ_RS08290	0.65	+0.9
1,528,616	-		MMJJ_RS08290	0.65	+0.5
1,528,628	-		MMJJ_RS08290	0.66	+0.5
1,528,635	+		MMJJ_RS08290	0.67	+0.7
1,528,635	+		MMJJ_RS08290	0.67	+1.9
1,528,635	+		MMJJ_RS08290	0.67	+1.1
1,528,635	+		MMJJ_RS08290	0.67	-1.6
1,528,691	-		MMJJ_RS08290	0.72	+0.6
1,528,696	-		MMJJ_RS08290	0.72	+1.5
1,528,696	-		MMJJ_RS08290	0.72	+0.8
1,528,751	+		MMJJ_RS08290	0.77	+0.1
1,528,751	+		MMJJ_RS08290	0.77	-1.4
1,528,775	-		MMJJ_RS08290	0.79	+0.7
1,528,776	+				+0.9
1,528,776	+		MMJJ_RS08290	0.80	-0.9
1,528,812	+		MMJJ_RS08290	0.83	-1.3
1,528,879	-		MMJJ_RS08290	0.89	+2.0
1,528,880	+		MMJJ_RS08290	0.89	-0.9
1,528,883	-		MMJJ_RS08290	0.89	-1.0
1,528,885	-		MMJJ_RS08290	0.89	+0.3
1,528,928	+				-0.8
1,528,979	-				+1.0
1,528,980	+				+0.7
1,529,009	+				+0.6
1,529,021	+				-0.7
1,529,023	-				+0.3
1,529,046	+				+0.9
1,529,051	-				-0.1
1,529,068	+				-2.2
1,529,069	-				+0.9
1,529,069	-				+1.3
1,529,070	+				+0.3
1,529,072	-				+1.6
1,529,072	-				+0.7
1,529,073	+				+0.9
1,529,073	+				+0.5
1,529,088	-				-1.0
1,529,163	+				+1.1
1,529,212	-				+0.3
1,529,212	-				+0.7
1,529,212	-				+2.1
1,529,213	+				+0.6
1,529,213	+				+0.7
1,529,233	-				+0.4
1,529,233	-				-0.9
1,529,233	-				+0.1
1,529,234	+				+0.2
1,529,263	-		MMJJ_RS08295	0.12	-0.4
1,529,263	-		MMJJ_RS08295	0.12	-0.5
1,529,263	-		MMJJ_RS08295	0.12	-0.1
1,529,264	+		MMJJ_RS08295	0.12	+0.9
1,529,266	-		MMJJ_RS08295	0.13	-1.6
1,529,266	-		MMJJ_RS08295	0.13	-0.2
1,529,267	+		MMJJ_RS08295	0.13	+0.7
1,529,267	+		MMJJ_RS08295	0.13	+0.7
1,529,267	+		MMJJ_RS08295	0.13	+1.0
1,529,279	-		MMJJ_RS08295	0.14	-2.9
1,529,279	-		MMJJ_RS08295	0.14	-0.6
1,529,279	-		MMJJ_RS08295	0.14	-0.5
1,529,279	-		MMJJ_RS08295	0.14	+1.1
1,529,279	-		MMJJ_RS08295	0.14	-1.5
1,529,280	+		MMJJ_RS08295	0.14	+0.8
1,529,280	+		MMJJ_RS08295	0.14	+0.6
1,529,282	-		MMJJ_RS08295	0.14	-0.6
1,529,282	-		MMJJ_RS08295	0.14	-0.8
1,529,307	+		MMJJ_RS08295	0.16	+0.7
1,529,307	+		MMJJ_RS08295	0.16	-0.1
1,529,314	+		MMJJ_RS08295	0.17	+0.2
1,529,318	-		MMJJ_RS08295	0.17	+0.2
1,529,318	-		MMJJ_RS08295	0.17	+1.3
1,529,319	+		MMJJ_RS08295	0.17	+0.9
1,529,321	-		MMJJ_RS08295	0.17	-0.4
1,529,321	-		MMJJ_RS08295	0.17	-0.8
1,529,321	-		MMJJ_RS08295	0.17	+1.6
1,529,322	+		MMJJ_RS08295	0.18	+0.7
1,529,327	-		MMJJ_RS08295	0.18	+1.0
1,529,327	-		MMJJ_RS08295	0.18	-0.0
1,529,328	+		MMJJ_RS08295	0.18	+0.8
1,529,378	-		MMJJ_RS08295	0.22	+1.1
1,529,378	-		MMJJ_RS08295	0.22	+0.1
1,529,378	-		MMJJ_RS08295	0.22	+0.9
1,529,381	-		MMJJ_RS08295	0.23	+1.2
1,529,382	+		MMJJ_RS08295	0.23	+0.3
1,529,399	-		MMJJ_RS08295	0.24	+0.9
1,529,420	-		MMJJ_RS08295	0.26	+1.9
1,529,421	+		MMJJ_RS08295	0.26	-1.3
1,529,549	-		MMJJ_RS08295	0.38	-0.6
1,529,553	-		MMJJ_RS08295	0.38	-2.1
1,529,602	-		MMJJ_RS08295	0.42	+1.5
1,529,606	-		MMJJ_RS08295	0.43	+2.3
1,529,606	-		MMJJ_RS08295	0.43	-0.4
1,529,606	-		MMJJ_RS08295	0.43	-0.7
1,529,606	-		MMJJ_RS08295	0.43	+0.9
1,529,606	-		MMJJ_RS08295	0.43	-0.5
1,529,606	-		MMJJ_RS08295	0.43	-0.5
1,529,650	-		MMJJ_RS08295	0.47	-1.0
1,529,729	+		MMJJ_RS08295	0.54	+0.5
1,529,769	-		MMJJ_RS08295	0.57	+1.9
1,529,769	-		MMJJ_RS08295	0.57	+0.7
1,529,770	+		MMJJ_RS08295	0.57	+1.3
1,529,770	+		MMJJ_RS08295	0.57	-0.4
1,529,781	+		MMJJ_RS08295	0.58	+0.6
1,529,786	+		MMJJ_RS08295	0.59	+0.3
1,529,788	-		MMJJ_RS08295	0.59	+0.3
1,529,789	+		MMJJ_RS08295	0.59	-0.6
1,529,791	-		MMJJ_RS08295	0.59	-2.1
1,529,791	-		MMJJ_RS08295	0.59	+0.2
1,529,792	+		MMJJ_RS08295	0.59	-1.0
1,529,792	+		MMJJ_RS08295	0.59	+0.3
1,529,792	+		MMJJ_RS08295	0.59	-0.6
1,529,792	+		MMJJ_RS08295	0.59	+0.7
1,529,792	+		MMJJ_RS08295	0.59	+0.7
1,529,807	-		MMJJ_RS08295	0.61	-0.2
1,529,833	+		MMJJ_RS08295	0.63	-1.0
1,529,833	+		MMJJ_RS08295	0.63	+0.5
1,529,846	-		MMJJ_RS08295	0.64	+2.7
1,529,846	-		MMJJ_RS08295	0.64	+0.5
1,529,846	-		MMJJ_RS08295	0.64	+0.7
1,529,846	-		MMJJ_RS08295	0.64	-0.2
1,529,846	-		MMJJ_RS08295	0.64	+1.1
1,529,846	-		MMJJ_RS08295	0.64	+2.5
1,529,846	-		MMJJ_RS08295	0.64	+1.9
1,529,847	+		MMJJ_RS08295	0.64	+2.6
1,529,847	+		MMJJ_RS08295	0.64	+1.3
1,529,847	+		MMJJ_RS08295	0.64	+2.1
1,529,850	-		MMJJ_RS08295	0.64	+1.2
1,529,851	+		MMJJ_RS08295	0.65	-0.1
1,529,854	-				-1.1
1,529,854	-		MMJJ_RS08295	0.65	+0.2
1,529,855	+		MMJJ_RS08295	0.65	+0.9
1,529,855	+		MMJJ_RS08295	0.65	+0.8
1,529,855	+		MMJJ_RS08295	0.65	+0.5
1,529,855	+		MMJJ_RS08295	0.65	+3.4
1,529,858	+		MMJJ_RS08295	0.65	-0.5
1,529,859	-		MMJJ_RS08295	0.65	+1.8
1,529,859	-		MMJJ_RS08295	0.65	+2.3
1,529,860	+		MMJJ_RS08295	0.65	+0.8
1,529,878	-		MMJJ_RS08295	0.67	-0.4
1,529,878	-		MMJJ_RS08295	0.67	+0.1
1,529,878	-		MMJJ_RS08295	0.67	+1.1
1,529,878	-		MMJJ_RS08295	0.67	-0.2
1,529,879	+		MMJJ_RS08295	0.67	+0.6
1,529,879	+		MMJJ_RS08295	0.67	+2.0
1,529,879	+		MMJJ_RS08295	0.67	+0.3
1,529,879	+		MMJJ_RS08295	0.67	-0.9
1,529,938	+		MMJJ_RS08295	0.72	+0.7
1,529,992	+		MMJJ_RS08295	0.77	-1.1
1,530,005	+		MMJJ_RS08295	0.78	+0.4
1,530,045	-		MMJJ_RS08295	0.82	-0.7
1,530,049	-		MMJJ_RS08295	0.82	+0.3
1,530,177	-				+0.8
1,530,230	+				+1.9
1,530,341	-				-1.6
1,530,341	-				+0.5
1,530,381	-				+0.1
1,530,441	+				-1.1
1,530,467	-				+0.4
1,530,501	-		MMJJ_RS08300	0.11	+1.4
1,530,501	-		MMJJ_RS08300	0.11	-0.1
1,530,515	+		MMJJ_RS08300	0.12	+1.6
1,530,533	+		MMJJ_RS08300	0.14	-0.7
1,530,535	+		MMJJ_RS08300	0.14	+0.4
1,530,539	-		MMJJ_RS08300	0.15	+0.9
1,530,539	-		MMJJ_RS08300	0.15	+1.1
1,530,540	+		MMJJ_RS08300	0.15	+0.5
1,530,540	+		MMJJ_RS08300	0.15	+0.3
1,530,540	+		MMJJ_RS08300	0.15	-0.6
1,530,541	-		MMJJ_RS08300	0.15	-1.0
1,530,541	-		MMJJ_RS08300	0.15	-1.2
1,530,542	+		MMJJ_RS08300	0.15	+0.7
1,530,542	+				+0.1
1,530,542	+		MMJJ_RS08300	0.15	+0.4
1,530,542	+		MMJJ_RS08300	0.15	+0.6
1,530,593	-		MMJJ_RS08300	0.20	+0.4
1,530,647	-		MMJJ_RS08300	0.25	+0.5
1,530,648	+		MMJJ_RS08300	0.25	+0.4
1,530,648	+		MMJJ_RS08300	0.25	-0.7
1,530,659	+		MMJJ_RS08300	0.26	-1.3
1,530,672	-		MMJJ_RS08300	0.27	-0.8
1,530,778	-		MMJJ_RS08300	0.37	+1.0
1,530,830	+		MMJJ_RS08300	0.42	-0.4
1,530,961	-		MMJJ_RS08300	0.54	-0.6
1,530,961	-		MMJJ_RS08300	0.54	+0.1
1,530,961	-		MMJJ_RS08300	0.54	+0.5
1,530,962	+		MMJJ_RS08300	0.54	+0.4
1,530,964	+		MMJJ_RS08300	0.54	-0.8
1,530,964	+		MMJJ_RS08300	0.54	+0.7
1,531,016	+		MMJJ_RS08300	0.59	+0.1
1,531,020	+		MMJJ_RS08300	0.59	+1.1
1,531,140	+		MMJJ_RS08300	0.70	-0.1
1,531,140	+		MMJJ_RS08300	0.70	+0.8
1,531,140	+		MMJJ_RS08300	0.70	-4.2
1,531,158	-		MMJJ_RS08300	0.72	+0.4
1,531,163	+		MMJJ_RS08300	0.72	+0.4
1,531,185	-		MMJJ_RS08300	0.74	-0.2
1,531,186	+		MMJJ_RS08300	0.74	-0.2
1,531,186	+		MMJJ_RS08300	0.74	+1.1
1,531,220	+		MMJJ_RS08300	0.78	+0.6