Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06950

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE
1,274,144	-		MMJJ_RS06940	0.69	-1.5
1,274,167	-		MMJJ_RS06940	0.77	-2.1
1,274,167	-		MMJJ_RS06940	0.77	-1.6
1,274,168	+		MMJJ_RS06940	0.77	-1.3
1,274,203	-		MMJJ_RS06940	0.89	-0.9
1,274,203	-		MMJJ_RS06940	0.89	-2.4
1,274,203	-		MMJJ_RS06940	0.89	-1.6
1,274,204	+		MMJJ_RS06940	0.90	-1.0
1,274,205	-				-0.5
1,274,206	+				-0.7
1,274,206	+				-0.8
1,274,206	+				-2.7
1,274,206	+				-2.6
1,274,206	+				-1.5
1,274,206	+				-2.7
1,274,211	-				-1.1
1,274,211	-				+1.7
1,274,211	-				-0.9
1,274,211	-				-2.5
1,274,217	-				-1.5
1,274,218	+				-0.6
1,274,225	-				+0.7
1,274,226	+				-0.9
1,274,226	+				-1.5
1,274,226	+				-3.5
1,274,226	+				-0.9
1,274,227	-				-2.7
1,274,252	-				-0.6
1,274,253	+				-1.4
1,274,255	-				-0.9
1,274,255	-				-1.6
1,274,255	-				-0.3
1,274,256	+				-1.0
1,274,256	+				-0.9
1,274,256	+				-2.0
1,274,257	-				+0.6
1,274,257	-				-0.5
1,274,257	-				-2.1
1,274,258	+				-0.2
1,274,258	+				-0.2
1,274,258	+				-2.2
1,274,317	-				+2.1
1,274,328	+				+1.6
1,274,404	-				+0.8
1,274,404	-				-0.5
1,274,404	-				-0.7
1,274,404	-				-0.8
1,274,404	-				+1.0
1,274,405	+				+0.9
1,274,405	+				-0.2
1,274,416	-		MMJJ_RS06945	0.10	-1.7
1,274,416	-		MMJJ_RS06945	0.10	-1.7
1,274,416	-		MMJJ_RS06945	0.10	+1.9
1,274,417	+		MMJJ_RS06945	0.11	+0.5
1,274,417	+		MMJJ_RS06945	0.11	+1.1
1,274,417	+		MMJJ_RS06945	0.11	+1.2
1,274,418	-		MMJJ_RS06945	0.11	+0.1
1,274,418	-		MMJJ_RS06945	0.11	+0.6
1,274,429	+		MMJJ_RS06945	0.12	-0.1
1,274,429	+		MMJJ_RS06945	0.12	-0.3
1,274,430	-				+0.7
1,274,477	+		MMJJ_RS06945	0.19	+0.8
1,274,499	-		MMJJ_RS06945	0.22	+1.6
1,274,499	-		MMJJ_RS06945	0.22	+0.4
1,274,500	+		MMJJ_RS06945	0.23	+0.7
1,274,500	+		MMJJ_RS06945	0.23	+0.3
1,274,517	-		MMJJ_RS06945	0.25	+0.8
1,274,517	-		MMJJ_RS06945	0.25	-1.4
1,274,561	-		MMJJ_RS06945	0.31	+0.8
1,274,589	+		MMJJ_RS06945	0.36	+1.0
1,274,600	+		MMJJ_RS06945	0.37	+0.9
1,274,601	-		MMJJ_RS06945	0.37	+1.4
1,274,635	-		MMJJ_RS06945	0.42	-1.8
1,274,635	-		MMJJ_RS06945	0.42	-1.1
1,274,684	+		MMJJ_RS06945	0.49	+1.0
1,274,711	+		MMJJ_RS06945	0.53	-2.8
1,274,711	+		MMJJ_RS06945	0.53	+1.0
1,274,727	-		MMJJ_RS06945	0.56	+0.3
1,274,731	-		MMJJ_RS06945	0.56	+0.1
1,274,761	-		MMJJ_RS06945	0.60	+0.2
1,274,762	+		MMJJ_RS06945	0.61	-1.3
1,274,762	+		MMJJ_RS06945	0.61	-2.2
1,274,762	+		MMJJ_RS06945	0.61	+0.4
1,274,822	-		MMJJ_RS06945	0.69	-0.9
1,274,881	+		MMJJ_RS06945	0.78	-0.2
1,274,931	-		MMJJ_RS06945	0.85	-1.2
1,274,978	+				-0.6
1,274,978	+				+0.7
1,274,980	-				+0.3
1,274,980	-				-0.4
1,274,981	+				-0.4
1,275,014	+				-0.3
1,275,019	-				-1.0
1,275,019	-				-2.6
1,275,019	-				-1.2
1,275,020	+				+0.7
1,275,020	+				+0.3
1,275,020	+				+0.8
1,275,020	+				+0.6
1,275,022	-				-2.4
1,275,022	-				-1.4
1,275,023	+				-0.9
1,275,023	+				+0.8
1,275,028	-				-2.0
1,275,033	-				-1.3
1,275,033	-				+0.7
1,275,034	+				-0.4
1,275,034	+				+0.4
1,275,039	+				-0.0
1,275,039	+				+1.1
1,275,042	-				-1.1
1,275,042	-				+0.4
1,275,043	+				-1.2
1,275,045	+				-0.2
1,275,048	+				+0.3
1,275,048	+				-0.6
1,275,057	-				+0.4
1,275,057	-				-2.6
1,275,058	+				+0.4
1,275,059	-				-0.8
1,275,060	+				+0.2
1,275,063	-				+0.4
1,275,064	+				+1.8
1,275,077	-				-1.1
1,275,077	-				-0.2
1,275,077	-				+0.9
1,275,078	+				-0.1
1,275,086	-				+0.1
1,275,086	-				-0.5
1,275,087	+				+0.8
1,275,092	+				+0.4
1,275,100	-				+2.3
1,275,100	-				-0.6
1,275,101	+				+1.1
1,275,105	+				+1.5
1,275,105	+				+0.9
1,275,108	+				+1.1
1,275,108	+				+0.6
1,275,112	+				+1.0
1,275,126	-				-0.9
1,275,126	-				+0.9
1,275,126	-				+1.0
1,275,127	+				+0.7
1,275,128	-				+1.4
1,275,128	-				+0.7
1,275,128	-				+0.7
1,275,136	-				+1.0
1,275,136	-				+1.3
1,275,137	+				+0.1
1,275,137	+				+1.0
1,275,141	+				+0.1
1,275,141	+				+1.6
1,275,157	-				+1.5
1,275,158	+				+0.7
1,275,164	-				+1.7
1,275,165	+				+1.4
1,275,191	+				+1.1
1,275,371	+		MMJJ_RS06950	0.24	+1.1
1,275,452	-		MMJJ_RS06950	0.33	-0.1
1,275,453	+		MMJJ_RS06950	0.33	+0.2
1,275,462	-		MMJJ_RS06950	0.34	-0.3
1,275,463	+		MMJJ_RS06950	0.34	+0.9
1,275,498	-		MMJJ_RS06950	0.38	+3.1
1,275,532	-		MMJJ_RS06950	0.42	-0.2
1,275,533	+		MMJJ_RS06950	0.42	+1.0
1,275,533	+		MMJJ_RS06950	0.42	+0.7
1,275,551	-		MMJJ_RS06950	0.44	-0.0
1,275,551	-		MMJJ_RS06950	0.44	-0.3
1,275,552	+		MMJJ_RS06950	0.44	-0.6
1,275,552	+		MMJJ_RS06950	0.44	+1.1
1,275,552	+		MMJJ_RS06950	0.44	+1.7
1,275,558	-		MMJJ_RS06950	0.44	+0.9
1,275,558	-		MMJJ_RS06950	0.44	+0.7
1,275,564	-		MMJJ_RS06950	0.45	+1.2
1,275,565	+		MMJJ_RS06950	0.45	+0.9
1,275,565	+		MMJJ_RS06950	0.45	+0.5
1,275,577	-		MMJJ_RS06950	0.46	-0.4
1,275,634	-		MMJJ_RS06950	0.52	+1.1
1,275,643	-		MMJJ_RS06950	0.53	+0.9
1,275,644	+		MMJJ_RS06950	0.53	+0.8
1,275,644	+		MMJJ_RS06950	0.53	-0.1
1,275,644	+		MMJJ_RS06950	0.53	+0.7
1,275,644	+		MMJJ_RS06950	0.53	+0.2
1,275,644	+		MMJJ_RS06950	0.53	+0.2
1,275,655	-		MMJJ_RS06950	0.55	+1.3
1,275,673	+		MMJJ_RS06950	0.56	+0.5
1,275,675	+		MMJJ_RS06950	0.57	+2.3
1,275,746	-		MMJJ_RS06950	0.64	-0.8
1,275,937	-		MMJJ_RS06950	0.85	+1.4
1,275,937	-		MMJJ_RS06950	0.85	-0.4
1,275,938	+		MMJJ_RS06950	0.85	+2.2
1,275,988	-				-0.3
1,275,988	-				-0.2
1,275,988	-				-0.1
1,275,988	-				+0.7
1,275,989	+				+0.9
1,275,989	+				+0.7
1,275,989	+				+0.4
1,275,989	+				+0.4
1,276,030	-				+0.8
1,276,031	+				+1.6
1,276,031	+				+1.1
1,276,031	+				+1.2
1,276,035	+				+1.3
1,276,040	-				+0.4
1,276,086	+				+1.2
1,276,095	+				-1.5
1,276,173	+				-1.5
1,276,707	-		MMJJ_RS06955	0.51	-1.1
1,276,881	-		MMJJ_RS06955	0.65	+0.1