Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15370

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
3,390,622	+		LRK54_RS15360	0.34	+1.4
3,390,623	-		LRK54_RS15360	0.34	+1.4
3,390,623	-		LRK54_RS15360	0.34	+1.7
3,390,819	+		LRK54_RS15360	0.58	-3.2
3,390,821	+		LRK54_RS15360	0.58	+0.1
3,390,822	-		LRK54_RS15360	0.59	+0.9
3,390,822	-		LRK54_RS15360	0.59	+0.0
3,390,822	-		LRK54_RS15360	0.59	-0.4
3,390,989	+		LRK54_RS15360	0.79	+0.3
3,391,132	-				+0.6
3,391,132	-				-0.5
3,391,132	-				-0.3
3,391,173	+				-0.1
3,391,173	+				+0.0
3,391,173	+				-0.5
3,391,173	+				+0.6
3,391,173	+				-1.1
3,391,173	+				+0.9
3,391,173	+				-0.0
3,391,173	+				+0.4
3,391,174	-				+0.1
3,391,174	-				+0.0
3,391,174	-				-0.0
3,391,174	-				+0.8
3,391,174	-				-1.5
3,391,174	-				+0.3
3,391,189	+				-0.2
3,391,189	+				-1.5
3,391,189	+				+0.7
3,391,189	+				-0.8
3,391,189	+				+0.4
3,391,189	+				+0.8
3,391,189	+				+3.3
3,391,189	+				-0.9
3,391,189	+				-1.6
3,391,189	+				-0.9
3,391,189	+				+0.2
3,391,190	-				-1.7
3,391,190	-				-0.1
3,391,190	-				+1.5
3,391,190	-				-0.4
3,391,190	-				-0.1
3,391,190	-				-0.7
3,391,190	-				-0.8
3,391,190	-				-0.5
3,391,190	-				+0.7
3,391,204	+				-2.2
3,391,204	+				-1.5
3,391,204	+				+0.4
3,391,205	-				-0.5
3,391,205	-				-0.6
3,391,205	-				-1.5
3,391,205	-				-0.2
3,391,219	+				-0.3
3,391,220	-				-1.1
3,391,220	-				+0.0
3,391,220	-				+0.7
3,391,223	+				-0.7
3,391,223	+				+0.7
3,391,223	+				-0.8
3,391,223	+				-0.5
3,391,223	+				-0.4
3,391,223	+				+0.4
3,391,224	-				-0.2
3,391,224	-				+0.1
3,391,224	-				+1.0
3,391,224	-				-1.3
3,391,224	-				-0.1
3,391,224	-				-0.2
3,391,230	+				+0.4
3,391,302	+				+0.7
3,391,302	+				+0.6
3,391,302	+				+0.2
3,391,302	+				+1.1
3,391,303	-				-0.8
3,391,303	-				+0.1
3,391,303	-				+0.2
3,391,415	+		LRK54_RS15365	0.18	-0.2
3,391,416	-		LRK54_RS15365	0.19	+0.8
3,391,416	-		LRK54_RS15365	0.19	-2.0
3,391,510	+		LRK54_RS15365	0.78	-0.6
3,391,511	-		LRK54_RS15365	0.79	-1.9
3,391,648	+		LRK54_RS15370	0.24	+0.2
3,391,649	-		LRK54_RS15370	0.24	+0.1
3,391,649	-		LRK54_RS15370	0.24	-1.5
3,391,702	+		LRK54_RS15370	0.36	+0.3
3,391,702	+		LRK54_RS15370	0.36	-0.8
3,391,702	+		LRK54_RS15370	0.36	-0.8
3,391,702	+		LRK54_RS15370	0.36	-1.8
3,391,702	+		LRK54_RS15370	0.36	-0.1
3,391,702	+		LRK54_RS15370	0.36	-1.0
3,391,702	+		LRK54_RS15370	0.36	+0.4
3,391,702	+		LRK54_RS15370	0.36	+0.5
3,391,702	+		LRK54_RS15370	0.36	+2.1
3,391,702	+		LRK54_RS15370	0.36	-0.3
3,391,702	+		LRK54_RS15370	0.36	+1.1
3,391,702	+		LRK54_RS15370	0.36	-1.9
3,391,703	-		LRK54_RS15370	0.36	-0.9
3,391,703	-		LRK54_RS15370	0.36	-0.6
3,391,703	-		LRK54_RS15370	0.36	+0.0
3,391,703	-		LRK54_RS15370	0.36	-0.8
3,391,703	-		LRK54_RS15370	0.36	-0.5
3,391,703	-		LRK54_RS15370	0.36	-1.3
3,391,703	-		LRK54_RS15370	0.36	-0.4
3,391,703	-		LRK54_RS15370	0.36	-0.5
3,391,703	-		LRK54_RS15370	0.36	-0.1
3,391,703	-		LRK54_RS15370	0.36	+0.7
3,391,703	-		LRK54_RS15370	0.36	-1.6
3,391,716	+		LRK54_RS15370	0.39	+0.1
3,391,717	-		LRK54_RS15370	0.39	-1.2
3,391,792	+		LRK54_RS15370	0.56	-0.5
3,391,792	+		LRK54_RS15370	0.56	+0.5
3,391,792	+		LRK54_RS15370	0.56	-1.0
3,391,792	+		LRK54_RS15370	0.56	-0.5
3,391,792	+		LRK54_RS15370	0.56	+0.3
3,391,792	+		LRK54_RS15370	0.56	+0.1
3,391,792	+		LRK54_RS15370	0.56	-1.0
3,391,792	+		LRK54_RS15370	0.56	+1.7
3,391,793	-		LRK54_RS15370	0.56	-0.1
3,391,793	-		LRK54_RS15370	0.56	-0.9
3,391,793	-		LRK54_RS15370	0.56	-0.8
3,391,793	-		LRK54_RS15370	0.56	-0.6
3,391,793	-		LRK54_RS15370	0.56	+0.3
3,391,793	-		LRK54_RS15370	0.56	+0.9
3,391,793	-		LRK54_RS15370	0.56	+0.1
3,391,793	-		LRK54_RS15370	0.56	-0.2
3,391,793	-		LRK54_RS15370	0.56	-0.2
3,391,879	+		LRK54_RS15370	0.76	+0.0
3,391,900	+		LRK54_RS15370	0.80	+1.7
3,391,900	+		LRK54_RS15370	0.80	-0.4
3,391,952	-				-1.7
3,391,952	-				-0.9
3,391,952	-				+0.3
3,391,952	-				-1.3
3,391,952	-				-1.1
3,391,966	+				-0.1
3,391,966	+				+0.6
3,391,966	+				+1.3
3,391,967	-				-1.8
3,391,967	-				-0.5
3,391,987	+				+0.5
3,391,988	-				+0.1
3,392,007	+				+0.2
3,392,008	-				-0.8
3,392,037	+				-0.9
3,392,038	-				-1.0
3,392,038	-				-1.3
3,392,038	-				-0.1
3,392,038	-				-0.3
3,392,038	-				-1.2
3,392,038	-				+0.1
3,392,047	+				-0.6
3,392,047	+				-0.7
3,392,048	-				-0.1
3,392,048	-				-0.9
3,392,088	+				+0.1
3,392,088	+				-0.9
3,392,089	-				-0.5
3,392,089	-				+0.1
3,392,089	-				+0.1
3,392,121	+				+0.3
3,392,122	-				-1.3
3,392,175	+				+0.9
3,392,176	-				-0.7
3,392,176	-				-0.8
3,392,212	-				-0.4
3,392,260	-		LRK54_RS15375	0.11	+0.9
3,392,290	+		LRK54_RS15375	0.12	-0.6
3,392,290	+		LRK54_RS15375	0.12	-0.5
3,392,290	+		LRK54_RS15375	0.12	+1.2
3,392,290	+		LRK54_RS15375	0.12	-1.4
3,392,290	+		LRK54_RS15375	0.12	-0.8
3,392,290	+		LRK54_RS15375	0.12	+0.5
3,392,291	-		LRK54_RS15375	0.12	+1.7
3,392,323	+		LRK54_RS15375	0.13	-0.9
3,392,323	+		LRK54_RS15375	0.13	-1.8
3,392,323	+		LRK54_RS15375	0.13	-1.1
3,392,323	+		LRK54_RS15375	0.13	+2.7
3,392,323	+		LRK54_RS15375	0.13	-1.0
3,392,324	-		LRK54_RS15375	0.13	+0.4
3,392,324	-		LRK54_RS15375	0.13	+0.0
3,392,324	-		LRK54_RS15375	0.13	-0.8
3,392,335	+		LRK54_RS15375	0.14	+0.1
3,392,451	+		LRK54_RS15375	0.19	-0.0
3,392,530	+		LRK54_RS15375	0.22	-1.1
3,392,530	+		LRK54_RS15375	0.22	-0.2
3,392,530	+		LRK54_RS15375	0.22	-1.9
3,392,530	+		LRK54_RS15375	0.22	-2.1
3,392,530	+		LRK54_RS15375	0.22	-0.1
3,392,530	+		LRK54_RS15375	0.22	+0.1
3,392,530	+		LRK54_RS15375	0.22	-0.9
3,392,531	-		LRK54_RS15375	0.22	-0.2
3,392,592	+		LRK54_RS15375	0.25	-0.7
3,392,593	-		LRK54_RS15375	0.25	+2.7
3,392,658	+		LRK54_RS15375	0.27	+1.3
3,392,659	-		LRK54_RS15375	0.27	+0.3
3,392,676	+		LRK54_RS15375	0.28	-1.5
3,392,676	+		LRK54_RS15375	0.28	-1.2
3,392,716	-		LRK54_RS15375	0.30	+0.4
3,392,788	+		LRK54_RS15375	0.33	-0.8
3,392,788	+		LRK54_RS15375	0.33	-0.2
3,392,788	+		LRK54_RS15375	0.33	-0.8
3,392,789	-		LRK54_RS15375	0.33	-1.0
3,392,853	+		LRK54_RS15375	0.36	+0.4
3,392,853	+		LRK54_RS15375	0.36	-0.9
3,392,854	-		LRK54_RS15375	0.36	-0.0
3,392,854	-		LRK54_RS15375	0.36	-0.7
3,392,854	-		LRK54_RS15375	0.36	-1.4
3,392,854	-		LRK54_RS15375	0.36	+0.6
3,392,856	+		LRK54_RS15375	0.36	-1.7
3,392,856	+		LRK54_RS15375	0.36	-0.5
3,392,856	+		LRK54_RS15375	0.36	-0.9
3,392,856	+		LRK54_RS15375	0.36	-0.7
3,392,856	+		LRK54_RS15375	0.36	-1.2
3,392,857	-		LRK54_RS15375	0.36	+1.9
3,392,857	-		LRK54_RS15375	0.36	+1.4
3,392,857	-		LRK54_RS15375	0.36	+0.8
3,392,857	-		LRK54_RS15375	0.36	-1.4
3,392,857	-		LRK54_RS15375	0.36	-0.3
3,392,857	-		LRK54_RS15375	0.36	-0.7
3,392,857	-		LRK54_RS15375	0.36	-1.4
3,392,857	-		LRK54_RS15375	0.36	-0.1
3,392,931	+		LRK54_RS15375	0.39	-1.0
3,392,976	+		LRK54_RS15375	0.41	-0.4
3,392,976	+		LRK54_RS15375	0.41	-0.7
3,392,976	+		LRK54_RS15375	0.41	-1.2
3,392,976	+		LRK54_RS15375	0.41	-1.5
3,392,976	+		LRK54_RS15375	0.41	+0.5
3,392,976	+		LRK54_RS15375	0.41	-0.6
3,392,976	+		LRK54_RS15375	0.41	+0.7
3,392,977	-		LRK54_RS15375	0.41	+0.6
3,392,977	-		LRK54_RS15375	0.41	+0.7
3,392,977	-		LRK54_RS15375	0.41	-1.7
3,392,977	-		LRK54_RS15375	0.41	-0.6
3,392,977	-		LRK54_RS15375	0.41	+0.3