Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11095

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
2,459,221	+		LRK54_RS11090	0.62	+0.2
2,459,221	+		LRK54_RS11090	0.62	-1.8
2,459,221	+		LRK54_RS11090	0.62	+0.1
2,459,221	+		LRK54_RS11090	0.62	-1.4
2,459,221	+		LRK54_RS11090	0.62	-0.9
2,459,221	+		LRK54_RS11090	0.62	-0.6
2,459,221	+		LRK54_RS11090	0.62	+0.0
2,459,221	+		LRK54_RS11090	0.62	-3.0
2,459,221	+		LRK54_RS11090	0.62	+0.5
2,459,221	+		LRK54_RS11090	0.62	-0.3
2,459,221	+		LRK54_RS11090	0.62	-2.1
2,459,221	+		LRK54_RS11090	0.62	-1.1
2,459,221	+		LRK54_RS11090	0.62	-2.3
2,459,221	+		LRK54_RS11090	0.62	+1.4
2,459,221	+		LRK54_RS11090	0.62	-0.2
2,459,221	+		LRK54_RS11090	0.62	+1.4
2,459,221	+		LRK54_RS11090	0.62	-1.7
2,459,221	+		LRK54_RS11090	0.62	-1.8
2,459,221	+		LRK54_RS11090	0.62	-0.7
2,459,221	+		LRK54_RS11090	0.62	-1.2
2,459,221	+		LRK54_RS11090	0.62	-2.3
2,459,221	+		LRK54_RS11090	0.62	-0.2
2,459,221	+		LRK54_RS11090	0.62	+0.2
2,459,221	+		LRK54_RS11090	0.62	-1.3
2,459,221	+		LRK54_RS11090	0.62	-0.9
2,459,221	+		LRK54_RS11090	0.62	-1.5
2,459,221	+		LRK54_RS11090	0.62	+1.3
2,459,222	-		LRK54_RS11090	0.62	+0.4
2,459,222	-		LRK54_RS11090	0.62	-1.2
2,459,222	-		LRK54_RS11090	0.62	+0.7
2,459,222	-		LRK54_RS11090	0.62	-0.8
2,459,222	-		LRK54_RS11090	0.62	-0.2
2,459,222	-		LRK54_RS11090	0.62	+1.4
2,459,222	-		LRK54_RS11090	0.62	-0.2
2,459,222	-		LRK54_RS11090	0.62	-1.1
2,459,222	-		LRK54_RS11090	0.62	-1.2
2,459,222	-		LRK54_RS11090	0.62	-1.0
2,459,222	-		LRK54_RS11090	0.62	-0.1
2,459,222	-		LRK54_RS11090	0.62	-1.4
2,459,222	-		LRK54_RS11090	0.62	-1.1
2,459,222	-		LRK54_RS11090	0.62	-0.2
2,459,222	-		LRK54_RS11090	0.62	+1.0
2,459,222	-		LRK54_RS11090	0.62	-0.9
2,459,222	-		LRK54_RS11090	0.62	-0.1
2,459,222	-		LRK54_RS11090	0.62	-0.4
2,459,222	-		LRK54_RS11090	0.62	+0.4
2,459,222	-		LRK54_RS11090	0.62	-0.1
2,459,317	+		LRK54_RS11090	0.67	-0.4
2,459,347	+		LRK54_RS11090	0.68	-0.2
2,459,347	+		LRK54_RS11090	0.68	-1.9
2,459,347	+		LRK54_RS11090	0.68	+0.2
2,459,347	+		LRK54_RS11090	0.68	-0.4
2,459,347	+		LRK54_RS11090	0.68	-0.2
2,459,347	+		LRK54_RS11090	0.68	-0.4
2,459,348	-		LRK54_RS11090	0.68	+0.5
2,459,348	-		LRK54_RS11090	0.68	-1.2
2,459,348	-		LRK54_RS11090	0.68	-0.3
2,459,348	-		LRK54_RS11090	0.68	-1.0
2,459,348	-		LRK54_RS11090	0.68	-0.4
2,459,348	-		LRK54_RS11090	0.68	-1.5
2,459,348	-		LRK54_RS11090	0.68	-0.9
2,459,348	-		LRK54_RS11090	0.68	-1.3
2,459,348	-		LRK54_RS11090	0.68	-1.1
2,459,348	-		LRK54_RS11090	0.68	-1.7
2,459,348	-		LRK54_RS11090	0.68	-2.5
2,459,348	-		LRK54_RS11090	0.68	-1.2
2,459,348	-		LRK54_RS11090	0.68	+0.8
2,459,395	+		LRK54_RS11090	0.71	-1.6
2,459,395	+		LRK54_RS11090	0.71	+1.8
2,459,395	+		LRK54_RS11090	0.71	-0.2
2,459,395	+		LRK54_RS11090	0.71	+0.3
2,459,395	+		LRK54_RS11090	0.71	-1.9
2,459,395	+		LRK54_RS11090	0.71	-0.2
2,459,395	+		LRK54_RS11090	0.71	-2.4
2,459,395	+		LRK54_RS11090	0.71	+0.5
2,459,395	+		LRK54_RS11090	0.71	-0.1
2,459,395	+		LRK54_RS11090	0.71	-3.3
2,459,395	+		LRK54_RS11090	0.71	-0.1
2,459,395	+		LRK54_RS11090	0.71	-0.8
2,459,395	+		LRK54_RS11090	0.71	+3.4
2,459,395	+		LRK54_RS11090	0.71	-1.4
2,459,395	+		LRK54_RS11090	0.71	-0.2
2,459,395	+		LRK54_RS11090	0.71	-0.7
2,459,395	+		LRK54_RS11090	0.71	-1.7
2,459,395	+		LRK54_RS11090	0.71	+0.1
2,459,395	+		LRK54_RS11090	0.71	-0.4
2,459,395	+		LRK54_RS11090	0.71	+1.1
2,459,395	+		LRK54_RS11090	0.71	-0.8
2,459,395	+		LRK54_RS11090	0.71	+0.4
2,459,395	+		LRK54_RS11090	0.71	-0.9
2,459,395	+		LRK54_RS11090	0.71	-1.6
2,459,395	+		LRK54_RS11090	0.71	-0.6
2,459,395	+		LRK54_RS11090	0.71	-1.4
2,459,395	+		LRK54_RS11090	0.71	-0.9
2,459,395	+		LRK54_RS11090	0.71	+0.1
2,459,395	+		LRK54_RS11090	0.71	-0.7
2,459,395	+		LRK54_RS11090	0.71	+0.4
2,459,395	+		LRK54_RS11090	0.71	-0.4
2,459,395	+		LRK54_RS11090	0.71	-0.2
2,459,395	+		LRK54_RS11090	0.71	+0.6
2,459,395	+		LRK54_RS11090	0.71	-0.3
2,459,395	+		LRK54_RS11090	0.71	-1.1
2,459,395	+		LRK54_RS11090	0.71	-1.4
2,459,395	+		LRK54_RS11090	0.71	-1.4
2,459,395	+		LRK54_RS11090	0.71	-1.9
2,459,395	+		LRK54_RS11090	0.71	-1.8
2,459,395	+		LRK54_RS11090	0.71	+2.2
2,459,395	+		LRK54_RS11090	0.71	-1.0
2,459,395	+		LRK54_RS11090	0.71	+0.1
2,459,395	+		LRK54_RS11090	0.71	-2.6
2,459,395	+		LRK54_RS11090	0.71	+1.2
2,459,395	+		LRK54_RS11090	0.71	+0.1
2,459,396	-		LRK54_RS11090	0.71	-1.2
2,459,396	-		LRK54_RS11090	0.71	+0.2
2,459,396	-		LRK54_RS11090	0.71	-3.1
2,459,396	-		LRK54_RS11090	0.71	-0.0
2,459,396	-		LRK54_RS11090	0.71	-0.9
2,459,396	-		LRK54_RS11090	0.71	-0.4
2,459,396	-		LRK54_RS11090	0.71	-0.8
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-1.5
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-1.3
2,459,396	-		LRK54_RS11090	0.71	+0.8
2,459,396	-		LRK54_RS11090	0.71	-1.8
2,459,396	-		LRK54_RS11090	0.71	-1.0
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-0.3
2,459,396	-		LRK54_RS11090	0.71	-1.4
2,459,396	-		LRK54_RS11090	0.71	-2.3
2,459,396	-		LRK54_RS11090	0.71	-0.7
2,459,396	-		LRK54_RS11090	0.71	+0.0
2,459,396	-		LRK54_RS11090	0.71	-1.4
2,459,396	-		LRK54_RS11090	0.71	-0.3
2,459,396	-		LRK54_RS11090	0.71	-1.3
2,459,396	-		LRK54_RS11090	0.71	-0.1
2,459,396	-		LRK54_RS11090	0.71	-1.1
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-2.9
2,459,396	-		LRK54_RS11090	0.71	-1.6
2,459,396	-		LRK54_RS11090	0.71	+0.8
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	+0.3
2,459,396	-		LRK54_RS11090	0.71	+0.4
2,459,396	-		LRK54_RS11090	0.71	+1.4
2,459,396	-		LRK54_RS11090	0.71	-1.1
2,459,396	-		LRK54_RS11090	0.71	-0.8
2,459,396	-		LRK54_RS11090	0.71	-0.5
2,459,396	-		LRK54_RS11090	0.71	-0.6
2,459,396	-		LRK54_RS11090	0.71	-0.0
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-1.7
2,459,396	-		LRK54_RS11090	0.71	-0.2
2,459,396	-		LRK54_RS11090	0.71	-2.1
2,459,396	-		LRK54_RS11090	0.71	-1.6
2,459,396	-		LRK54_RS11090	0.71	-0.1
2,459,396	-		LRK54_RS11090	0.71	-2.3
2,459,398	+		LRK54_RS11090	0.71	-2.2
2,459,398	+		LRK54_RS11090	0.71	-1.6
2,459,398	+		LRK54_RS11090	0.71	-0.9
2,459,398	+		LRK54_RS11090	0.71	+0.1
2,459,398	+		LRK54_RS11090	0.71	+1.2
2,459,398	+		LRK54_RS11090	0.71	-0.7
2,459,398	+		LRK54_RS11090	0.71	-0.9
2,459,398	+		LRK54_RS11090	0.71	-0.6
2,459,398	+		LRK54_RS11090	0.71	-0.5
2,459,398	+		LRK54_RS11090	0.71	-0.4
2,459,398	+		LRK54_RS11090	0.71	-1.5
2,459,398	+		LRK54_RS11090	0.71	-1.1
2,459,398	+		LRK54_RS11090	0.71	+2.4
2,459,398	+		LRK54_RS11090	0.71	-1.5
2,459,398	+		LRK54_RS11090	0.71	-0.9
2,459,398	+		LRK54_RS11090	0.71	-0.3
2,459,398	+		LRK54_RS11090	0.71	-1.3
2,459,398	+		LRK54_RS11090	0.71	-1.2
2,459,398	+		LRK54_RS11090	0.71	+0.7
2,459,398	+		LRK54_RS11090	0.71	-2.6
2,459,398	+		LRK54_RS11090	0.71	+1.2
2,459,398	+		LRK54_RS11090	0.71	-1.1
2,459,398	+		LRK54_RS11090	0.71	-0.2
2,459,399	-		LRK54_RS11090	0.71	+0.6
2,459,399	-		LRK54_RS11090	0.71	-1.0
2,459,399	-		LRK54_RS11090	0.71	-0.9
2,459,399	-		LRK54_RS11090	0.71	+0.6
2,459,399	-		LRK54_RS11090	0.71	+1.4
2,459,399	-		LRK54_RS11090	0.71	-1.0
2,459,399	-		LRK54_RS11090	0.71	+0.4
2,459,399	-		LRK54_RS11090	0.71	+1.2
2,459,399	-		LRK54_RS11090	0.71	+0.6
2,459,399	-		LRK54_RS11090	0.71	-1.7
2,459,399	-		LRK54_RS11090	0.71	-2.1
2,459,399	-		LRK54_RS11090	0.71	-1.3
2,459,399	-		LRK54_RS11090	0.71	-0.9
2,459,399	-		LRK54_RS11090	0.71	+1.4
2,459,399	-		LRK54_RS11090	0.71	-0.8
2,459,399	-		LRK54_RS11090	0.71	+0.8
2,459,399	-		LRK54_RS11090	0.71	-0.6
2,459,399	-		LRK54_RS11090	0.71	-1.8
2,459,399	-		LRK54_RS11090	0.71	-0.2
2,459,399	-		LRK54_RS11090	0.71	-1.7
2,459,399	-		LRK54_RS11090	0.71	-0.2
2,459,399	-		LRK54_RS11090	0.71	+0.6
2,459,399	-		LRK54_RS11090	0.71	-0.8
2,459,399	-		LRK54_RS11090	0.71	-1.0
2,459,399	-		LRK54_RS11090	0.71	-1.9
2,459,399	-		LRK54_RS11090	0.71	+0.1
2,459,399	-		LRK54_RS11090	0.71	+0.4
2,459,540	-		LRK54_RS11090	0.79	-0.7
2,459,584	+		LRK54_RS11090	0.81	-0.1
2,459,584	+		LRK54_RS11090	0.81	+0.6
2,459,584	+		LRK54_RS11090	0.81	-0.9
2,459,584	+		LRK54_RS11090	0.81	-0.3
2,459,584	+		LRK54_RS11090	0.81	-0.1
2,459,584	+		LRK54_RS11090	0.81	-0.1
2,459,584	+		LRK54_RS11090	0.81	-1.3
2,459,584	+		LRK54_RS11090	0.81	+1.2
2,459,584	+		LRK54_RS11090	0.81	-1.4
2,459,584	+		LRK54_RS11090	0.81	-2.4
2,459,584	+		LRK54_RS11090	0.81	-1.7
2,459,584	+		LRK54_RS11090	0.81	-0.9
2,459,584	+		LRK54_RS11090	0.81	-1.2
2,459,584	+		LRK54_RS11090	0.81	-0.6
2,459,584	+		LRK54_RS11090	0.81	-0.4
2,459,584	+		LRK54_RS11090	0.81	+0.2
2,459,584	+		LRK54_RS11090	0.81	-1.7
2,459,584	+		LRK54_RS11090	0.81	-0.7
2,459,584	+		LRK54_RS11090	0.81	+2.0
2,459,584	+		LRK54_RS11090	0.81	-2.1
2,459,584	+		LRK54_RS11090	0.81	-0.4
2,459,584	+		LRK54_RS11090	0.81	-0.7
2,459,584	+		LRK54_RS11090	0.81	-1.3
2,459,585	-		LRK54_RS11090	0.81	-0.6
2,459,585	-		LRK54_RS11090	0.81	-1.1
2,459,585	-		LRK54_RS11090	0.81	-1.4
2,459,585	-		LRK54_RS11090	0.81	-2.2
2,459,585	-		LRK54_RS11090	0.81	-0.7
2,459,585	-		LRK54_RS11090	0.81	-0.9
2,459,585	-		LRK54_RS11090	0.81	-1.8
2,459,585	-		LRK54_RS11090	0.81	+0.8
2,459,585	-		LRK54_RS11090	0.81	-0.0
2,459,585	-		LRK54_RS11090	0.81	-1.3
2,459,585	-		LRK54_RS11090	0.81	-0.2
2,459,585	-		LRK54_RS11090	0.81	-1.7
2,459,585	-		LRK54_RS11090	0.81	-1.3
2,459,585	-		LRK54_RS11090	0.81	-0.3
2,459,585	-		LRK54_RS11090	0.81	-1.1
2,459,585	-		LRK54_RS11090	0.81	-0.6
2,459,585	-		LRK54_RS11090	0.81	+0.1
2,459,585	-		LRK54_RS11090	0.81	-1.2
2,459,585	-		LRK54_RS11090	0.81	-1.1
2,459,734	+		LRK54_RS11090	0.89	+0.5
2,459,734	+		LRK54_RS11090	0.89	+0.6
2,459,735	-		LRK54_RS11090	0.89	-2.4
2,459,735	-		LRK54_RS11090	0.89	-1.6
2,459,735	-		LRK54_RS11090	0.89	-3.3
2,459,735	-		LRK54_RS11090	0.89	-2.3
2,459,735	-		LRK54_RS11090	0.89	-1.6
2,459,911	+				-2.7
2,459,911	+				-1.6
2,459,911	+				-0.7
2,459,911	+				-0.6
2,459,911	+				+1.4
2,459,911	+				+1.2
2,459,911	+				+0.8
2,459,911	+				+0.1
2,459,911	+				-0.3
2,459,911	+				+1.1
2,459,911	+				-1.4
2,459,912	-				-0.6
2,459,912	-				-0.3
2,459,912	-				-1.1
2,459,912	-				-0.2
2,459,912	-				-0.2
2,459,912	-				-1.2
2,459,912	-				-0.4
2,459,912	-				-0.0
2,459,912	-				-0.5
2,459,912	-				-2.1
2,459,912	-				+1.4
2,459,912	-				-0.3
2,459,912	-				-0.5
2,459,953	+				+0.9
2,459,953	+				-1.0
2,459,953	+				+0.2
2,459,954	-				-0.2
2,459,954	-				-1.5
2,459,954	-				-0.5
2,460,238	+				+0.8
2,460,238	+				-0.2
2,460,238	+				-0.4
2,460,238	+				-1.2
2,460,238	+				-1.5
2,460,239	-				-0.9
2,460,239	-				-0.6
2,460,239	-				+0.5
2,460,239	-				+0.8
2,460,239	-				+0.2
2,460,239	-				-0.5
2,460,239	-				+0.6
2,460,239	-				-1.8
2,460,239	-				-0.4
2,460,239	-				-1.5