Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10010

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
2,194,295	+		LRK54_RS10000	0.61	+0.6
2,194,295	+		LRK54_RS10000	0.61	+0.4
2,194,382	+		LRK54_RS10000	0.74	+0.6
2,194,382	+		LRK54_RS10000	0.74	-0.5
2,194,382	+		LRK54_RS10000	0.74	-1.3
2,194,382	+		LRK54_RS10000	0.74	-0.5
2,194,382	+		LRK54_RS10000	0.74	-1.0
2,194,382	+		LRK54_RS10000	0.74	+0.4
2,194,382	+		LRK54_RS10000	0.74	+0.5
2,194,382	+		LRK54_RS10000	0.74	-0.1
2,194,382	+		LRK54_RS10000	0.74	-0.2
2,194,382	+		LRK54_RS10000	0.74	-1.2
2,194,383	-		LRK54_RS10000	0.74	-0.2
2,194,383	-		LRK54_RS10000	0.74	+0.2
2,194,383	-		LRK54_RS10000	0.74	+1.0
2,194,383	-		LRK54_RS10000	0.74	+1.1
2,194,383	-		LRK54_RS10000	0.74	+0.4
2,194,383	-		LRK54_RS10000	0.74	-1.0
2,194,409	+		LRK54_RS10000	0.78	+1.0
2,194,409	+		LRK54_RS10000	0.78	-2.2
2,194,409	+		LRK54_RS10000	0.78	-1.3
2,194,409	+		LRK54_RS10000	0.78	+0.1
2,194,409	+		LRK54_RS10000	0.78	+0.3
2,194,410	-		LRK54_RS10000	0.78	+1.2
2,194,410	-		LRK54_RS10000	0.78	+2.7
2,194,410	-		LRK54_RS10000	0.78	-2.6
2,194,410	-		LRK54_RS10000	0.78	-0.2
2,194,410	-		LRK54_RS10000	0.78	-1.6
2,194,410	-		LRK54_RS10000	0.78	+0.1
2,194,410	-		LRK54_RS10000	0.78	+1.1
2,194,410	-		LRK54_RS10000	0.78	-0.2
2,194,410	-		LRK54_RS10000	0.78	-0.8
2,194,478	+		LRK54_RS10000	0.89	-1.4
2,194,479	-		LRK54_RS10000	0.89	-2.5
2,194,479	-		LRK54_RS10000	0.89	-0.1
2,194,479	-		LRK54_RS10000	0.89	-1.3
2,194,735	+		LRK54_RS10005	0.26	-0.0
2,194,735	+		LRK54_RS10005	0.26	-1.1
2,194,735	+		LRK54_RS10005	0.26	-0.3
2,194,735	+		LRK54_RS10005	0.26	+0.2
2,194,736	-		LRK54_RS10005	0.26	-0.7
2,194,736	-		LRK54_RS10005	0.26	-1.5
2,195,454	+				+0.7
2,195,455	-				-0.5
2,195,455	-				+0.1
2,195,455	-				+3.0
2,195,455	-				-0.6
2,195,635	+		LRK54_RS10010	0.15	-0.1
2,195,635	+		LRK54_RS10010	0.15	-0.1
2,195,635	+		LRK54_RS10010	0.15	+0.2
2,195,635	+		LRK54_RS10010	0.15	-0.5
2,195,635	+		LRK54_RS10010	0.15	-0.2
2,195,635	+		LRK54_RS10010	0.15	+0.2
2,195,635	+		LRK54_RS10010	0.15	+0.6
2,195,635	+		LRK54_RS10010	0.15	+0.4
2,195,635	+		LRK54_RS10010	0.15	-1.4
2,195,635	+		LRK54_RS10010	0.15	+0.1
2,195,635	+		LRK54_RS10010	0.15	-0.3
2,195,635	+		LRK54_RS10010	0.15	-1.5
2,195,635	+		LRK54_RS10010	0.15	+0.4
2,195,635	+		LRK54_RS10010	0.15	+0.5
2,195,636	-		LRK54_RS10010	0.15	-1.2
2,195,636	-		LRK54_RS10010	0.15	+0.5
2,195,636	-		LRK54_RS10010	0.15	+0.7
2,195,636	-		LRK54_RS10010	0.15	-0.2
2,195,636	-		LRK54_RS10010	0.15	+1.3
2,195,636	-		LRK54_RS10010	0.15	-0.8
2,195,636	-		LRK54_RS10010	0.15	-1.2
2,195,636	-		LRK54_RS10010	0.15	-0.3
2,195,636	-		LRK54_RS10010	0.15	-0.9
2,195,636	-		LRK54_RS10010	0.15	-0.0
2,195,636	-		LRK54_RS10010	0.15	-0.4
2,195,636	-		LRK54_RS10010	0.15	+0.3
2,195,636	-		LRK54_RS10010	0.15	+0.6
2,195,636	-		LRK54_RS10010	0.15	+0.5
2,195,636	-		LRK54_RS10010	0.15	-0.4
2,195,636	-		LRK54_RS10010	0.15	-0.5
2,195,636	-		LRK54_RS10010	0.15	-2.4
2,195,770	+		LRK54_RS10010	0.21	+0.1
2,195,771	-		LRK54_RS10010	0.21	-0.6
2,195,771	-		LRK54_RS10010	0.21	-0.1
2,195,771	-		LRK54_RS10010	0.21	-0.2
2,195,771	-		LRK54_RS10010	0.21	-0.8
2,195,875	+		LRK54_RS10010	0.26	-0.9
2,195,875	+		LRK54_RS10010	0.26	+0.8
2,195,875	+		LRK54_RS10010	0.26	-0.4
2,195,875	+		LRK54_RS10010	0.26	+0.8
2,195,875	+		LRK54_RS10010	0.26	+1.1
2,195,875	+		LRK54_RS10010	0.26	-1.6
2,195,875	+		LRK54_RS10010	0.26	-0.3
2,195,875	+		LRK54_RS10010	0.26	-1.6
2,195,875	+		LRK54_RS10010	0.26	-0.3
2,195,875	+		LRK54_RS10010	0.26	+0.6
2,195,875	+		LRK54_RS10010	0.26	-0.0
2,195,875	+		LRK54_RS10010	0.26	+0.9
2,195,875	+		LRK54_RS10010	0.26	+1.6
2,195,875	+		LRK54_RS10010	0.26	-1.7
2,195,875	+		LRK54_RS10010	0.26	+0.6
2,195,875	+		LRK54_RS10010	0.26	+0.8
2,195,875	+		LRK54_RS10010	0.26	-0.3
2,195,875	+		LRK54_RS10010	0.26	-0.1
2,195,875	+		LRK54_RS10010	0.26	+1.4
2,195,875	+		LRK54_RS10010	0.26	-1.8
2,195,875	+		LRK54_RS10010	0.26	+0.8
2,195,875	+		LRK54_RS10010	0.26	-2.7
2,195,875	+		LRK54_RS10010	0.26	-1.2
2,195,875	+		LRK54_RS10010	0.26	-1.4
2,195,875	+		LRK54_RS10010	0.26	-0.2
2,195,875	+		LRK54_RS10010	0.26	-0.9
2,195,875	+		LRK54_RS10010	0.26	-1.0
2,195,875	+		LRK54_RS10010	0.26	-0.7
2,195,875	+		LRK54_RS10010	0.26	-0.2
2,195,875	+		LRK54_RS10010	0.26	+1.4
2,195,875	+		LRK54_RS10010	0.26	-0.1
2,195,875	+		LRK54_RS10010	0.26	-0.6
2,195,875	+		LRK54_RS10010	0.26	-1.0
2,195,875	+		LRK54_RS10010	0.26	+0.1
2,195,875	+		LRK54_RS10010	0.26	-0.1
2,195,875	+		LRK54_RS10010	0.26	+0.6
2,195,875	+		LRK54_RS10010	0.26	-0.4
2,195,875	+		LRK54_RS10010	0.26	+0.5
2,195,876	-		LRK54_RS10010	0.26	+0.3
2,195,876	-		LRK54_RS10010	0.26	-1.3
2,195,876	-		LRK54_RS10010	0.26	-0.9
2,195,876	-		LRK54_RS10010	0.26	-0.2
2,195,876	-		LRK54_RS10010	0.26	+0.4
2,195,876	-		LRK54_RS10010	0.26	-0.2
2,195,876	-		LRK54_RS10010	0.26	-0.3
2,195,876	-		LRK54_RS10010	0.26	+0.7
2,195,876	-		LRK54_RS10010	0.26	-1.3
2,195,876	-		LRK54_RS10010	0.26	-0.8
2,195,876	-		LRK54_RS10010	0.26	-2.1
2,195,876	-		LRK54_RS10010	0.26	-1.4
2,195,876	-		LRK54_RS10010	0.26	+0.2
2,195,876	-		LRK54_RS10010	0.26	-1.4
2,195,876	-		LRK54_RS10010	0.26	-0.8
2,195,876	-		LRK54_RS10010	0.26	+0.3
2,195,876	-		LRK54_RS10010	0.26	-0.5
2,195,876	-		LRK54_RS10010	0.26	+1.6
2,195,876	-		LRK54_RS10010	0.26	-2.4
2,195,876	-		LRK54_RS10010	0.26	-0.2
2,195,876	-		LRK54_RS10010	0.26	-0.3
2,195,876	-		LRK54_RS10010	0.26	-0.3
2,195,876	-		LRK54_RS10010	0.26	+1.1
2,195,876	-		LRK54_RS10010	0.26	+0.5
2,195,876	-		LRK54_RS10010	0.26	-0.7
2,195,876	-		LRK54_RS10010	0.26	-1.2
2,195,876	-		LRK54_RS10010	0.26	-1.3
2,195,876	-		LRK54_RS10010	0.26	+0.6
2,195,876	-		LRK54_RS10010	0.26	-0.6
2,195,876	-		LRK54_RS10010	0.26	+0.7
2,195,876	-		LRK54_RS10010	0.26	-0.2
2,195,876	-		LRK54_RS10010	0.26	-1.4
2,195,876	-		LRK54_RS10010	0.26	-0.8
2,195,876	-		LRK54_RS10010	0.26	-1.4
2,195,998	+		LRK54_RS10010	0.31	-1.5
2,195,998	+		LRK54_RS10010	0.31	-0.1
2,195,998	+		LRK54_RS10010	0.31	-0.8
2,195,998	+		LRK54_RS10010	0.31	-1.6
2,195,998	+		LRK54_RS10010	0.31	-0.8
2,195,998	+		LRK54_RS10010	0.31	+2.4
2,195,998	+		LRK54_RS10010	0.31	-0.2
2,195,998	+		LRK54_RS10010	0.31	-0.8
2,195,998	+		LRK54_RS10010	0.31	+1.4
2,195,998	+		LRK54_RS10010	0.31	-0.6
2,195,998	+		LRK54_RS10010	0.31	+0.4
2,195,998	+		LRK54_RS10010	0.31	-0.2
2,195,999	-		LRK54_RS10010	0.31	-0.0
2,195,999	-		LRK54_RS10010	0.31	+0.2
2,195,999	-		LRK54_RS10010	0.31	+0.9
2,195,999	-		LRK54_RS10010	0.31	-1.0
2,195,999	-		LRK54_RS10010	0.31	+0.9
2,195,999	-		LRK54_RS10010	0.31	-0.3
2,195,999	-		LRK54_RS10010	0.31	-0.9
2,195,999	-		LRK54_RS10010	0.31	+0.4
2,195,999	-		LRK54_RS10010	0.31	-0.9
2,195,999	-		LRK54_RS10010	0.31	-1.6
2,195,999	-		LRK54_RS10010	0.31	-1.1
2,195,999	-		LRK54_RS10010	0.31	-0.6
2,196,071	-		LRK54_RS10010	0.34	-0.5
2,196,071	-		LRK54_RS10010	0.34	+0.5
2,196,071	-		LRK54_RS10010	0.34	-1.4
2,196,208	+		LRK54_RS10010	0.40	+0.2
2,196,208	+		LRK54_RS10010	0.40	-0.6
2,196,208	+		LRK54_RS10010	0.40	-0.1
2,196,208	+		LRK54_RS10010	0.40	+1.4
2,196,208	+		LRK54_RS10010	0.40	+2.1
2,196,208	+		LRK54_RS10010	0.40	+0.7
2,196,208	+		LRK54_RS10010	0.40	-1.1
2,196,208	+		LRK54_RS10010	0.40	-1.1
2,196,209	-		LRK54_RS10010	0.40	+0.6
2,196,209	-		LRK54_RS10010	0.40	-0.7
2,196,209	-		LRK54_RS10010	0.40	+1.4
2,196,280	+		LRK54_RS10010	0.43	-0.7
2,196,280	+		LRK54_RS10010	0.43	-0.8
2,196,280	+		LRK54_RS10010	0.43	-0.2
2,196,280	+		LRK54_RS10010	0.43	-2.8
2,196,280	+		LRK54_RS10010	0.43	+0.7
2,196,280	+		LRK54_RS10010	0.43	-2.6
2,196,280	+		LRK54_RS10010	0.43	-0.3
2,196,280	+		LRK54_RS10010	0.43	-2.8
2,196,281	-		LRK54_RS10010	0.43	-0.8
2,196,281	-		LRK54_RS10010	0.43	-0.1
2,196,281	-		LRK54_RS10010	0.43	-0.4
2,196,281	-		LRK54_RS10010	0.43	-0.4
2,196,281	-		LRK54_RS10010	0.43	-0.0
2,196,319	+		LRK54_RS10010	0.45	-0.2
2,196,319	+		LRK54_RS10010	0.45	-0.5
2,196,320	-		LRK54_RS10010	0.45	-0.0
2,196,320	-		LRK54_RS10010	0.45	+0.4
2,196,320	-		LRK54_RS10010	0.45	+0.4
2,196,334	+		LRK54_RS10010	0.45	-0.4
2,196,334	+		LRK54_RS10010	0.45	-1.0
2,196,334	+		LRK54_RS10010	0.45	-0.2
2,196,334	+		LRK54_RS10010	0.45	-0.1
2,196,334	+		LRK54_RS10010	0.45	+0.8
2,196,334	+		LRK54_RS10010	0.45	+1.0
2,196,334	+		LRK54_RS10010	0.45	-0.9
2,196,334	+		LRK54_RS10010	0.45	-0.4
2,196,334	+		LRK54_RS10010	0.45	+0.4
2,196,334	+		LRK54_RS10010	0.45	-1.0
2,196,334	+		LRK54_RS10010	0.45	-0.6
2,196,334	+		LRK54_RS10010	0.45	+2.0
2,196,334	+		LRK54_RS10010	0.45	-0.4
2,196,334	+		LRK54_RS10010	0.45	-0.2
2,196,334	+		LRK54_RS10010	0.45	-0.5
2,196,335	-		LRK54_RS10010	0.45	-0.4
2,196,335	-		LRK54_RS10010	0.45	-1.3
2,196,335	-		LRK54_RS10010	0.45	-1.4
2,196,335	-		LRK54_RS10010	0.45	+2.4
2,196,335	-		LRK54_RS10010	0.45	-1.1
2,196,335	-		LRK54_RS10010	0.45	-1.1
2,196,335	-		LRK54_RS10010	0.45	+0.1
2,196,335	-		LRK54_RS10010	0.45	-0.4
2,196,335	-		LRK54_RS10010	0.45	+0.0
2,196,335	-		LRK54_RS10010	0.45	-0.4
2,196,604	+		LRK54_RS10010	0.57	-0.4
2,196,604	+		LRK54_RS10010	0.57	+0.1
2,196,605	-		LRK54_RS10010	0.57	+0.7
2,196,649	+		LRK54_RS10010	0.59	+2.4
2,196,649	+		LRK54_RS10010	0.59	+1.0
2,196,649	+		LRK54_RS10010	0.59	+0.2
2,196,649	+		LRK54_RS10010	0.59	-0.4
2,196,649	+		LRK54_RS10010	0.59	+0.8
2,196,649	+		LRK54_RS10010	0.59	-1.5
2,196,649	+		LRK54_RS10010	0.59	+0.3
2,196,649	+		LRK54_RS10010	0.59	-0.2
2,196,649	+		LRK54_RS10010	0.59	-1.5
2,196,649	+		LRK54_RS10010	0.59	+0.1
2,196,649	+		LRK54_RS10010	0.59	+0.5
2,196,649	+		LRK54_RS10010	0.59	-1.2
2,196,649	+		LRK54_RS10010	0.59	-0.7
2,196,650	-		LRK54_RS10010	0.59	+0.8
2,196,650	-		LRK54_RS10010	0.59	-0.4
2,196,650	-		LRK54_RS10010	0.59	+0.1
2,196,650	-		LRK54_RS10010	0.59	+0.0
2,196,650	-		LRK54_RS10010	0.59	-0.5
2,196,650	-		LRK54_RS10010	0.59	-2.6
2,196,650	-		LRK54_RS10010	0.59	+0.3
2,196,847	+		LRK54_RS10010	0.67	+0.1
2,196,847	+		LRK54_RS10010	0.67	-1.3
2,196,847	+		LRK54_RS10010	0.67	-0.5
2,196,847	+		LRK54_RS10010	0.67	+0.4
2,196,847	+		LRK54_RS10010	0.67	+0.3
2,196,847	+		LRK54_RS10010	0.67	+0.0
2,196,848	-		LRK54_RS10010	0.67	-1.7
2,196,848	-		LRK54_RS10010	0.67	-0.4
2,196,848	-		LRK54_RS10010	0.67	+0.9
2,196,848	-		LRK54_RS10010	0.67	-0.2
2,196,848	-		LRK54_RS10010	0.67	+0.2
2,196,848	-		LRK54_RS10010	0.67	-0.1
2,196,848	-		LRK54_RS10010	0.67	-0.0
2,196,973	+		LRK54_RS10010	0.73	-1.5
2,196,973	+		LRK54_RS10010	0.73	-0.5
2,196,973	+		LRK54_RS10010	0.73	+0.4
2,196,973	+		LRK54_RS10010	0.73	-1.2
2,196,973	+		LRK54_RS10010	0.73	-0.8
2,196,973	+		LRK54_RS10010	0.73	-0.0
2,196,973	+		LRK54_RS10010	0.73	+0.8
2,196,974	-		LRK54_RS10010	0.73	-0.4
2,196,974	-		LRK54_RS10010	0.73	-1.1
2,196,974	-		LRK54_RS10010	0.73	+1.1
2,196,974	-		LRK54_RS10010	0.73	-1.4
2,196,974	-		LRK54_RS10010	0.73	-0.0
2,196,974	-		LRK54_RS10010	0.73	-0.1
2,196,974	-		LRK54_RS10010	0.73	-1.7
2,196,974	-		LRK54_RS10010	0.73	-0.7
2,197,156	+		LRK54_RS10010	0.81	+0.8
2,197,156	+		LRK54_RS10010	0.81	-0.6
2,197,156	+		LRK54_RS10010	0.81	+0.3
2,197,156	+		LRK54_RS10010	0.81	+0.1
2,197,156	+		LRK54_RS10010	0.81	-0.6
2,197,156	+		LRK54_RS10010	0.81	+0.1
2,197,156	+		LRK54_RS10010	0.81	+0.8
2,197,156	+		LRK54_RS10010	0.81	+0.1
2,197,157	-		LRK54_RS10010	0.81	-0.4
2,197,157	-		LRK54_RS10010	0.81	-0.0
2,197,157	-		LRK54_RS10010	0.81	+0.4
2,197,157	-		LRK54_RS10010	0.81	-0.9
2,197,157	-		LRK54_RS10010	0.81	+1.1
2,197,157	-		LRK54_RS10010	0.81	-0.0
2,197,157	-		LRK54_RS10010	0.81	+0.8
2,197,157	-		LRK54_RS10010	0.81	+0.1
2,197,157	-		LRK54_RS10010	0.81	-0.9
2,197,157	-		LRK54_RS10010	0.81	+1.1
2,197,171	+		LRK54_RS10010	0.81	-1.3
2,197,171	+		LRK54_RS10010	0.81	+0.2
2,197,171	+		LRK54_RS10010	0.81	+1.4
2,197,171	+		LRK54_RS10010	0.81	-0.4
2,197,171	+		LRK54_RS10010	0.81	+0.7
2,197,171	+		LRK54_RS10010	0.81	+1.0
2,197,172	-		LRK54_RS10010	0.81	+0.4
2,197,172	-		LRK54_RS10010	0.81	+0.8
2,197,172	-		LRK54_RS10010	0.81	+0.4
2,197,172	-		LRK54_RS10010	0.81	+0.1
2,197,172	-		LRK54_RS10010	0.81	+0.5
2,197,172	-		LRK54_RS10010	0.81	-0.3
2,197,172	-		LRK54_RS10010	0.81	+0.1
2,197,172	-		LRK54_RS10010	0.81	-1.0
2,197,231	+		LRK54_RS10010	0.84	-0.4
2,197,231	+		LRK54_RS10010	0.84	-0.6
2,197,231	+		LRK54_RS10010	0.84	-0.4
2,197,231	+		LRK54_RS10010	0.84	-0.7
2,197,231	+		LRK54_RS10010	0.84	+0.4
2,197,231	+		LRK54_RS10010	0.84	-0.8
2,197,231	+		LRK54_RS10010	0.84	-0.0
2,197,231	+		LRK54_RS10010	0.84	-1.1
2,197,232	-		LRK54_RS10010	0.84	+0.8
2,197,232	-		LRK54_RS10010	0.84	+0.1
2,197,232	-		LRK54_RS10010	0.84	+0.6
2,197,232	-		LRK54_RS10010	0.84	-0.1
2,197,232	-		LRK54_RS10010	0.84	-1.2
2,197,232	-		LRK54_RS10010	0.84	-1.4
2,197,232	-		LRK54_RS10010	0.84	-1.1
2,197,232	-		LRK54_RS10010	0.84	-0.7
2,197,232	-		LRK54_RS10010	0.84	+1.2
2,197,232	-		LRK54_RS10010	0.84	+0.3
2,197,232	-		LRK54_RS10010	0.84	-0.3
2,197,232	-		LRK54_RS10010	0.84	-0.0
2,197,232	-		LRK54_RS10010	0.84	-1.3
2,197,232	-		LRK54_RS10010	0.84	+0.6
2,197,232	-		LRK54_RS10010	0.84	+1.2
2,197,232	-		LRK54_RS10010	0.84	-1.6
2,197,543	+				+0.2
2,197,543	+				+0.6
2,197,543	+				-0.9
2,197,544	-				+0.1
2,197,544	-				+0.1
2,197,544	-				+0.3
2,197,544	-				-0.1
2,197,544	-				+0.3
2,197,544	-				-0.3
2,197,606	+				-0.5
2,197,607	-				-0.2
2,197,660	-				+0.2
2,198,222	-		LRK54_RS10015	0.22	-0.5
2,198,229	-		LRK54_RS10015	0.22	-0.4