Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05730

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,237,464	+		LRK54_RS05720	0.64	+0.2
1,237,464	+		LRK54_RS05720	0.64	-0.8
1,237,464	+		LRK54_RS05720	0.64	-1.1
1,237,464	+		LRK54_RS05720	0.64	-0.4
1,237,464	+		LRK54_RS05720	0.64	-0.2
1,237,464	+		LRK54_RS05720	0.64	-0.9
1,237,464	+		LRK54_RS05720	0.64	-0.9
1,237,464	+		LRK54_RS05720	0.64	-1.1
1,237,464	+		LRK54_RS05720	0.64	+1.4
1,237,464	+		LRK54_RS05720	0.64	-2.6
1,237,465	-		LRK54_RS05720	0.64	-0.9
1,237,465	-		LRK54_RS05720	0.64	+0.1
1,237,465	-		LRK54_RS05720	0.64	-0.9
1,237,465	-		LRK54_RS05720	0.64	-0.1
1,237,465	-		LRK54_RS05720	0.64	-0.8
1,237,465	-		LRK54_RS05720	0.64	+1.4
1,237,465	-		LRK54_RS05720	0.64	-0.1
1,237,465	-		LRK54_RS05720	0.64	-1.0
1,237,465	-		LRK54_RS05720	0.64	+1.2
1,237,465	-		LRK54_RS05720	0.64	-2.2
1,237,465	-		LRK54_RS05720	0.64	+0.9
1,237,465	-		LRK54_RS05720	0.64	-1.4
1,237,465	-		LRK54_RS05720	0.64	+0.6
1,237,465	-		LRK54_RS05720	0.64	+0.3
1,237,549	-		LRK54_RS05720	0.77	-1.7
1,238,003	+		LRK54_RS05725	0.56	-1.2
1,238,003	+		LRK54_RS05725	0.56	-1.0
1,238,003	+		LRK54_RS05725	0.56	+1.4
1,238,003	+		LRK54_RS05725	0.56	-1.9
1,238,003	+		LRK54_RS05725	0.56	-0.6
1,238,003	+		LRK54_RS05725	0.56	+1.1
1,238,003	+		LRK54_RS05725	0.56	-1.7
1,238,003	+		LRK54_RS05725	0.56	+0.1
1,238,003	+		LRK54_RS05725	0.56	-1.0
1,238,004	-		LRK54_RS05725	0.56	-0.4
1,238,004	-		LRK54_RS05725	0.56	-1.0
1,238,004	-		LRK54_RS05725	0.56	-1.2
1,238,004	-		LRK54_RS05725	0.56	-0.0
1,238,004	-		LRK54_RS05725	0.56	-0.5
1,238,004	-		LRK54_RS05725	0.56	-0.4
1,238,004	-		LRK54_RS05725	0.56	-1.4
1,238,004	-		LRK54_RS05725	0.56	-2.9
1,238,075	+		LRK54_RS05725	0.69	-1.0
1,238,075	+		LRK54_RS05725	0.69	-0.7
1,238,075	+		LRK54_RS05725	0.69	+0.2
1,238,075	+		LRK54_RS05725	0.69	-0.6
1,238,075	+		LRK54_RS05725	0.69	-1.9
1,238,075	+		LRK54_RS05725	0.69	+0.8
1,238,075	+		LRK54_RS05725	0.69	-1.7
1,238,075	+		LRK54_RS05725	0.69	+0.7
1,238,076	-		LRK54_RS05725	0.69	-0.6
1,238,076	-		LRK54_RS05725	0.69	+0.1
1,238,076	-		LRK54_RS05725	0.69	+2.4
1,238,076	-		LRK54_RS05725	0.69	-1.7
1,238,076	-		LRK54_RS05725	0.69	+0.3
1,238,076	-		LRK54_RS05725	0.69	-0.4
1,238,076	-		LRK54_RS05725	0.69	-0.4
1,238,076	-		LRK54_RS05725	0.69	+1.0
1,238,076	-		LRK54_RS05725	0.69	+0.6
1,238,076	-		LRK54_RS05725	0.69	-2.3
1,238,076	-		LRK54_RS05725	0.69	-0.7
1,238,076	-		LRK54_RS05725	0.69	+1.4
1,238,209	-				+1.8
1,238,209	-				+0.8
1,238,243	+				+0.1
1,238,243	+				-0.4
1,238,243	+				-1.8
1,238,243	+				+0.4
1,238,243	+				-0.9
1,238,243	+				+0.7
1,238,243	+				-0.6
1,238,243	+				-1.2
1,238,243	+				-0.5
1,238,243	+				-1.9
1,238,243	+				-1.0
1,238,243	+				-2.8
1,238,243	+				-0.2
1,238,243	+				-1.0
1,238,243	+				+0.7
1,238,243	+				-1.9
1,238,243	+				+0.1
1,238,243	+				+0.4
1,238,243	+				+0.8
1,238,243	+				+0.1
1,238,243	+				-0.2
1,238,243	+				-0.6
1,238,243	+				+0.1
1,238,243	+				-0.4
1,238,243	+				-0.7
1,238,243	+				+0.6
1,238,243	+				+1.4
1,238,243	+				+0.1
1,238,243	+				-0.6
1,238,243	+				+1.7
1,238,243	+				-1.4
1,238,243	+				-1.7
1,238,243	+				-0.0
1,238,243	+				-1.1
1,238,243	+				-1.2
1,238,243	+				-0.4
1,238,243	+				-0.8
1,238,243	+				-0.2
1,238,243	+				+0.1
1,238,243	+				-0.4
1,238,243	+				-2.5
1,238,243	+				+1.4
1,238,243	+				+0.4
1,238,243	+				-0.5
1,238,243	+				-1.5
1,238,243	+				-0.7
1,238,243	+				-0.2
1,238,243	+				-0.7
1,238,243	+				+1.0
1,238,243	+				+0.1
1,238,243	+				+0.0
1,238,243	+				-0.7
1,238,244	-				+1.0
1,238,244	-				-0.4
1,238,244	-				-0.2
1,238,244	-				-1.2
1,238,244	-				-2.2
1,238,244	-				-0.4
1,238,244	-				-1.0
1,238,244	-				-1.4
1,238,244	-				+0.2
1,238,244	-				-0.7
1,238,244	-				+0.3
1,238,244	-				-0.7
1,238,244	-				-0.7
1,238,244	-				+0.6
1,238,244	-				-0.8
1,238,244	-				-0.6
1,238,244	-				-1.2
1,238,244	-				+1.3
1,238,244	-				-0.4
1,238,244	-				-0.9
1,238,244	-				-0.4
1,238,244	-				-1.4
1,238,244	-				+0.7
1,238,244	-				+0.1
1,238,244	-				+0.8
1,238,244	-				-0.8
1,238,244	-				+0.2
1,238,244	-				+0.1
1,238,244	-				-0.2
1,238,244	-				+2.1
1,238,244	-				-1.4
1,238,244	-				-0.9
1,238,244	-				-0.2
1,238,244	-				+1.2
1,238,244	-				+0.4
1,238,244	-				-2.5
1,238,244	-				-1.5
1,238,244	-				-1.6
1,238,244	-				-0.7
1,238,244	-				-0.7
1,238,244	-				-0.7
1,238,244	-				-1.8
1,238,244	-				-0.2
1,238,244	-				+0.4
1,238,244	-				-2.7
1,238,244	-				+1.3
1,238,244	-				+0.1
1,238,244	-				+0.5
1,238,244	-				-1.3
1,238,244	-				+0.3
1,238,274	+				-0.2
1,238,274	+				-1.4
1,238,274	+				-0.7
1,238,274	+				+0.0
1,238,274	+				+0.4
1,238,274	+				-1.1
1,238,274	+				-3.0
1,238,274	+				-0.0
1,238,274	+				+0.2
1,238,274	+				-0.5
1,238,274	+				-0.0
1,238,274	+				-0.2
1,238,275	-				-1.6
1,238,275	-				+0.3
1,238,275	-				+0.1
1,238,275	-				-2.3
1,238,275	-				-0.5
1,238,275	-				-2.0
1,238,275	-				-0.5
1,238,275	-				-1.6
1,238,275	-				-0.3
1,238,275	-				+0.8
1,238,275	-				-0.9
1,238,275	-				+0.1
1,238,275	-				-1.7
1,238,275	-				-0.3
1,238,275	-				-3.2
1,238,275	-				-0.0
1,238,289	+				-0.7
1,238,289	+				-0.1
1,238,289	+				-0.6
1,238,289	+				+0.3
1,238,289	+				-1.5
1,238,289	+				+1.0
1,238,289	+				-0.2
1,238,289	+				-1.0
1,238,289	+				+0.8
1,238,289	+				+0.2
1,238,289	+				+0.5
1,238,289	+				-0.4
1,238,289	+				-2.2
1,238,289	+				+0.4
1,238,290	-				-0.0
1,238,290	-				+1.2
1,238,290	-				+0.8
1,238,290	-				+0.4
1,238,290	-				-0.8
1,238,290	-				-1.0
1,238,290	-				-0.9
1,238,290	-				-0.9
1,238,290	-				+1.4
1,238,290	-				-0.4
1,238,290	-				-0.6
1,238,290	-				-1.3
1,238,346	+				-0.0
1,238,346	+				-1.3
1,238,346	+				-0.5
1,238,346	+				+0.1
1,238,347	-				-0.4
1,238,347	-				-0.4
1,238,347	-				-0.4
1,238,347	-				+0.1
1,238,347	-				-0.5
1,238,347	-				-1.3
1,238,360	+				+0.3
1,238,360	+				-0.2
1,238,360	+				-0.4
1,238,360	+				+1.1
1,238,360	+				+2.1
1,238,360	+				-0.7
1,238,360	+				+1.6
1,238,360	+				+1.1
1,238,360	+				+1.2
1,238,360	+				+0.4
1,238,360	+				-0.7
1,238,360	+				+1.8
1,238,360	+				+0.3
1,238,360	+				-1.1
1,238,360	+				+0.3
1,238,360	+				-2.0
1,238,360	+				-0.1
1,238,360	+				+0.6
1,238,360	+				-0.2
1,238,360	+				-0.2
1,238,360	+				-0.7
1,238,360	+				+0.2
1,238,360	+				-1.6
1,238,360	+				-0.4
1,238,360	+				-0.2
1,238,360	+				+1.3
1,238,360	+				-0.2
1,238,360	+				-1.3
1,238,360	+				-0.7
1,238,360	+				+0.3
1,238,360	+				+0.4
1,238,361	-				-0.7
1,238,361	-				-0.7
1,238,361	-				-2.1
1,238,361	-				+0.1
1,238,361	-				-0.8
1,238,361	-				+0.3
1,238,361	-				+0.6
1,238,361	-				+1.2
1,238,361	-				+0.2
1,238,361	-				-0.0
1,238,361	-				+0.6
1,238,361	-				-0.9
1,238,361	-				-1.4
1,238,361	-				-0.2
1,238,361	-				-0.0
1,238,361	-				-0.9
1,238,361	-				-1.7
1,238,361	-				+0.3
1,238,362	-				-1.5
1,238,365	+				+0.1
1,238,365	+				-1.8
1,238,365	+				+0.1
1,238,365	+				+0.2
1,238,365	+				-0.8
1,238,365	+				-2.6
1,238,365	+				+0.1
1,238,365	+				-2.2
1,238,365	+				-0.4
1,238,365	+				+1.4
1,238,366	-				-2.0
1,238,366	-				-0.7
1,238,366	-				-0.9
1,238,366	-				-0.3
1,238,366	-				+0.5
1,238,366	-				-1.1
1,238,366	-				-0.6
1,238,366	-				-1.4
1,238,414	+				+0.1
1,238,414	+				+1.4
1,238,414	+				+0.8
1,238,414	+				-0.9
1,238,414	+				-0.2
1,238,414	+				-0.4
1,238,414	+				+0.1
1,238,414	+				-0.6
1,238,414	+				-1.0
1,238,414	+				-1.0
1,238,414	+				+0.1
1,238,414	+				-0.6
1,238,414	+				-0.7
1,238,414	+				-0.9
1,238,414	+				+0.3
1,238,415	-				+0.5
1,238,415	-				-1.2
1,238,415	-				+0.1
1,238,415	-				-1.3
1,238,415	-				+0.9
1,238,415	-				+0.5
1,238,415	-				-0.8
1,238,415	-				+0.9
1,238,415	-				-0.6
1,238,415	-				-1.1
1,238,415	-				+0.9
1,238,436	+				-1.3
1,238,436	+				-1.0
1,238,436	+				-0.6
1,238,437	-				+0.3
1,238,487	+		LRK54_RS05730	0.12	-1.2
1,238,487	+		LRK54_RS05730	0.12	+0.6
1,238,487	+		LRK54_RS05730	0.12	-0.4
1,238,487	+		LRK54_RS05730	0.12	-1.3
1,238,487	+		LRK54_RS05730	0.12	-0.0
1,238,488	-		LRK54_RS05730	0.12	+0.2
1,238,488	-		LRK54_RS05730	0.12	-0.2
1,238,488	-		LRK54_RS05730	0.12	+0.3
1,238,512	+		LRK54_RS05730	0.14	-0.3
1,238,512	+		LRK54_RS05730	0.14	+1.3
1,238,513	-		LRK54_RS05730	0.14	+0.6
1,238,513	-		LRK54_RS05730	0.14	-0.3
1,238,513	-		LRK54_RS05730	0.14	-1.6
1,238,823	+		LRK54_RS05730	0.43	+0.1
1,238,823	+		LRK54_RS05730	0.43	-0.4
1,238,823	+		LRK54_RS05730	0.43	-0.7
1,238,823	+		LRK54_RS05730	0.43	-0.6
1,238,824	-		LRK54_RS05730	0.43	+0.4
1,238,824	-		LRK54_RS05730	0.43	-0.2
1,238,824	-		LRK54_RS05730	0.43	-1.4
1,238,824	-		LRK54_RS05730	0.43	+0.1
1,238,824	-		LRK54_RS05730	0.43	-0.2
1,238,824	-		LRK54_RS05730	0.43	-1.7
1,238,824	-		LRK54_RS05730	0.43	-1.2
1,238,824	-		LRK54_RS05730	0.43	-1.3
1,238,824	-		LRK54_RS05730	0.43	-2.8
1,238,824	-		LRK54_RS05730	0.43	+1.3
1,238,824	-		LRK54_RS05730	0.43	-1.9
1,238,886	+		LRK54_RS05730	0.48	-0.3
1,238,886	+		LRK54_RS05730	0.48	-1.9
1,238,886	+		LRK54_RS05730	0.48	+0.8
1,238,886	+		LRK54_RS05730	0.48	+0.2
1,238,886	+		LRK54_RS05730	0.48	+1.4
1,238,886	+		LRK54_RS05730	0.48	+0.4
1,238,886	+		LRK54_RS05730	0.48	-2.0
1,238,886	+		LRK54_RS05730	0.48	+0.4
1,238,886	+		LRK54_RS05730	0.48	+0.8
1,238,887	-		LRK54_RS05730	0.48	-1.5
1,238,887	-		LRK54_RS05730	0.48	+0.3
1,238,887	-		LRK54_RS05730	0.48	-0.6
1,238,887	-		LRK54_RS05730	0.48	-0.2
1,238,887	-		LRK54_RS05730	0.48	-0.7
1,238,887	-		LRK54_RS05730	0.48	+0.1
1,238,887	-		LRK54_RS05730	0.48	+0.7
1,238,887	-		LRK54_RS05730	0.48	-2.3
1,238,887	-		LRK54_RS05730	0.48	-0.2
1,238,887	-		LRK54_RS05730	0.48	-0.2
1,238,887	-		LRK54_RS05730	0.48	-0.4
1,238,887	-		LRK54_RS05730	0.48	+0.1
1,238,887	-		LRK54_RS05730	0.48	+1.3
1,238,887	-		LRK54_RS05730	0.48	-0.8
1,239,139	+		LRK54_RS05730	0.72	-1.8
1,239,139	+		LRK54_RS05730	0.72	-0.2
1,239,139	+		LRK54_RS05730	0.72	-1.1
1,239,139	+		LRK54_RS05730	0.72	+1.0
1,239,139	+		LRK54_RS05730	0.72	-0.5
1,239,139	+		LRK54_RS05730	0.72	+1.4
1,239,139	+		LRK54_RS05730	0.72	-0.4
1,239,139	+		LRK54_RS05730	0.72	-0.2
1,239,140	-		LRK54_RS05730	0.72	-0.7
1,239,140	-		LRK54_RS05730	0.72	+1.0
1,239,140	-		LRK54_RS05730	0.72	+0.1
1,239,140	-		LRK54_RS05730	0.72	+0.2
1,239,140	-		LRK54_RS05730	0.72	-0.8
1,239,140	-		LRK54_RS05730	0.72	-0.7
1,239,140	-		LRK54_RS05730	0.72	-1.8
1,239,294	+		LRK54_RS05730	0.86	-0.1
1,239,294	+		LRK54_RS05730	0.86	-1.4
1,239,294	+		LRK54_RS05730	0.86	+0.1
1,239,294	+		LRK54_RS05730	0.86	-0.5
1,239,294	+		LRK54_RS05730	0.86	+0.1
1,239,294	+		LRK54_RS05730	0.86	-0.7
1,239,294	+		LRK54_RS05730	0.86	-0.6
1,239,294	+		LRK54_RS05730	0.86	-0.2
1,239,294	+		LRK54_RS05730	0.86	-0.8
1,239,294	+		LRK54_RS05730	0.86	+0.2
1,239,294	+		LRK54_RS05730	0.86	-1.0
1,239,294	+		LRK54_RS05730	0.86	-0.4
1,239,294	+		LRK54_RS05730	0.86	-1.1
1,239,294	+		LRK54_RS05730	0.86	-0.8
1,239,294	+		LRK54_RS05730	0.86	-0.7
1,239,294	+		LRK54_RS05730	0.86	+0.1
1,239,294	+		LRK54_RS05730	0.86	-0.3
1,239,295	-		LRK54_RS05730	0.86	-0.6
1,239,295	-		LRK54_RS05730	0.86	+1.4
1,239,295	-		LRK54_RS05730	0.86	-0.4
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