Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02375

Experiment: R2A with nitrite 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02370 and LRK54_RS02375 overlap by 4 nucleotidesLRK54_RS02375 and LRK54_RS02380 are separated by 13 nucleotides LRK54_RS02370: LRK54_RS02370 - glutamate-5-semialdehyde dehydrogenase, at 514,637 to 515,899 _RS02370 LRK54_RS02375: LRK54_RS02375 - glutamate 5-kinase, at 515,896 to 517,083 _RS02375 LRK54_RS02380: LRK54_RS02380 - argininosuccinate lyase, at 517,097 to 518,392 _RS02380 Position (kb) 515 516 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.980 kb on + strand, within LRK54_RS02370at 514.980 kb on + strand, within LRK54_RS02370at 514.981 kb on - strand, within LRK54_RS02370at 514.981 kb on - strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.211 kb on + strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.212 kb on - strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.232 kb on + strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.233 kb on - strand, within LRK54_RS02370at 515.538 kb on + strand, within LRK54_RS02370at 515.538 kb on + strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.539 kb on - strand, within LRK54_RS02370at 515.981 kb on + strandat 515.981 kb on + strandat 515.982 kb on - strandat 515.982 kb on - strandat 516.046 kb on + strand, within LRK54_RS02375at 516.047 kb on + strand, within LRK54_RS02375at 516.047 kb on + strand, within LRK54_RS02375at 516.048 kb on - strand, within LRK54_RS02375at 516.048 kb on - strand, within LRK54_RS02375at 516.048 kb on - strand, within LRK54_RS02375at 516.048 kb on - strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.239 kb on + strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.240 kb on - strand, within LRK54_RS02375at 516.282 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.515 kb on + strand, within LRK54_RS02375at 516.516 kb on - strand, within LRK54_RS02375at 516.516 kb on - strand, within LRK54_RS02375at 517.240 kb on - strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.296 kb on + strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.297 kb on - strand, within LRK54_RS02380at 517.440 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.500 kb on + strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.501 kb on - strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.569 kb on + strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.570 kb on - strand, within LRK54_RS02380at 517.587 kb on - strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.710 kb on + strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.711 kb on - strand, within LRK54_RS02380at 517.929 kb on + strand, within LRK54_RS02380

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrite 50 mM
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514,980 + LRK54_RS02370 0.27 +1.8
514,980 + LRK54_RS02370 0.27 +0.4
514,981 - LRK54_RS02370 0.27 -0.6
514,981 - LRK54_RS02370 0.27 -0.8
515,211 + LRK54_RS02370 0.45 -0.1
515,211 + LRK54_RS02370 0.45 -0.1
515,211 + LRK54_RS02370 0.45 -0.8
515,211 + LRK54_RS02370 0.45 -0.7
515,211 + LRK54_RS02370 0.45 -0.9
515,211 + LRK54_RS02370 0.45 +0.4
515,211 + LRK54_RS02370 0.45 +0.1
515,211 + LRK54_RS02370 0.45 -0.3
515,212 - LRK54_RS02370 0.46 -0.6
515,212 - LRK54_RS02370 0.46 -0.6
515,212 - LRK54_RS02370 0.46 +0.5
515,212 - LRK54_RS02370 0.46 -0.5
515,212 - LRK54_RS02370 0.46 -0.1
515,212 - LRK54_RS02370 0.46 -1.3
515,212 - LRK54_RS02370 0.46 -1.9
515,212 - LRK54_RS02370 0.46 -0.7
515,212 - LRK54_RS02370 0.46 +0.9
515,212 - LRK54_RS02370 0.46 +0.6
515,212 - LRK54_RS02370 0.46 -0.9
515,212 - LRK54_RS02370 0.46 +0.2
515,232 + LRK54_RS02370 0.47 +0.4
515,232 + LRK54_RS02370 0.47 -1.2
515,232 + LRK54_RS02370 0.47 -1.4
515,232 + LRK54_RS02370 0.47 +1.9
515,232 + LRK54_RS02370 0.47 +0.4
515,232 + LRK54_RS02370 0.47 -1.0
515,232 + LRK54_RS02370 0.47 +0.6
515,232 + LRK54_RS02370 0.47 +0.0
515,232 + LRK54_RS02370 0.47 +2.1
515,232 + LRK54_RS02370 0.47 -1.3
515,232 + LRK54_RS02370 0.47 -0.6
515,233 - LRK54_RS02370 0.47 +0.0
515,233 - LRK54_RS02370 0.47 +0.9
515,233 - LRK54_RS02370 0.47 +0.5
515,233 - LRK54_RS02370 0.47 -2.2
515,233 - LRK54_RS02370 0.47 -0.6
515,233 - LRK54_RS02370 0.47 -0.3
515,233 - LRK54_RS02370 0.47 -0.4
515,233 - LRK54_RS02370 0.47 +1.5
515,233 - LRK54_RS02370 0.47 +0.8
515,233 - LRK54_RS02370 0.47 -1.6
515,233 - LRK54_RS02370 0.47 -2.2
515,233 - LRK54_RS02370 0.47 -2.9
515,233 - LRK54_RS02370 0.47 -1.6
515,233 - LRK54_RS02370 0.47 -0.6
515,233 - LRK54_RS02370 0.47 -0.2
515,233 - LRK54_RS02370 0.47 -1.9
515,233 - LRK54_RS02370 0.47 -0.6
515,233 - LRK54_RS02370 0.47 +1.0
515,233 - LRK54_RS02370 0.47 -1.1
515,233 - LRK54_RS02370 0.47 +0.9
515,233 - LRK54_RS02370 0.47 -0.5
515,538 + LRK54_RS02370 0.71 -0.6
515,538 + LRK54_RS02370 0.71 -0.8
515,539 - LRK54_RS02370 0.71 +0.6
515,539 - LRK54_RS02370 0.71 +0.9
515,539 - LRK54_RS02370 0.71 -1.2
515,539 - LRK54_RS02370 0.71 +0.5
515,539 - LRK54_RS02370 0.71 -2.3
515,539 - LRK54_RS02370 0.71 +1.5
515,539 - LRK54_RS02370 0.71 -0.9
515,539 - LRK54_RS02370 0.71 +0.6
515,539 - LRK54_RS02370 0.71 +1.5
515,981 + +1.7
515,981 + -2.1
515,982 - +1.0
515,982 - +1.7
516,046 + LRK54_RS02375 0.13 -0.8
516,047 + LRK54_RS02375 0.13 +0.2
516,047 + LRK54_RS02375 0.13 +0.1
516,048 - LRK54_RS02375 0.13 -1.8
516,048 - LRK54_RS02375 0.13 +0.4
516,048 - LRK54_RS02375 0.13 +0.2
516,048 - LRK54_RS02375 0.13 +0.1
516,239 + LRK54_RS02375 0.29 +0.4
516,239 + LRK54_RS02375 0.29 -0.5
516,239 + LRK54_RS02375 0.29 -2.4
516,239 + LRK54_RS02375 0.29 +0.5
516,240 - LRK54_RS02375 0.29 +2.2
516,240 - LRK54_RS02375 0.29 +1.3
516,240 - LRK54_RS02375 0.29 +0.4
516,240 - LRK54_RS02375 0.29 +0.2
516,240 - LRK54_RS02375 0.29 -0.2
516,282 + LRK54_RS02375 0.32 -0.2
516,515 + LRK54_RS02375 0.52 -0.6
516,515 + LRK54_RS02375 0.52 -0.6
516,515 + LRK54_RS02375 0.52 -0.8
516,516 - LRK54_RS02375 0.52 -1.0
516,516 - LRK54_RS02375 0.52 +0.4
517,240 - LRK54_RS02380 0.11 -1.1
517,296 + LRK54_RS02380 0.15 -0.9
517,296 + LRK54_RS02380 0.15 +0.7
517,296 + LRK54_RS02380 0.15 +0.1
517,296 + LRK54_RS02380 0.15 -0.3
517,297 - LRK54_RS02380 0.15 -1.5
517,297 - LRK54_RS02380 0.15 -1.8
517,297 - LRK54_RS02380 0.15 -0.9
517,297 - LRK54_RS02380 0.15 +1.9
517,297 - LRK54_RS02380 0.15 -0.3
517,297 - LRK54_RS02380 0.15 +0.1
517,297 - LRK54_RS02380 0.15 +0.1
517,440 + LRK54_RS02380 0.26 -1.3
517,500 + LRK54_RS02380 0.31 +0.7
517,500 + LRK54_RS02380 0.31 -1.6
517,500 + LRK54_RS02380 0.31 +0.7
517,500 + LRK54_RS02380 0.31 -1.5
517,501 - LRK54_RS02380 0.31 -0.1
517,501 - LRK54_RS02380 0.31 -0.8
517,501 - LRK54_RS02380 0.31 +0.4
517,501 - LRK54_RS02380 0.31 -0.1
517,501 - LRK54_RS02380 0.31 -0.3
517,569 + LRK54_RS02380 0.36 -0.1
517,569 + LRK54_RS02380 0.36 -2.2
517,570 - LRK54_RS02380 0.36 +1.1
517,570 - LRK54_RS02380 0.36 -0.6
517,570 - LRK54_RS02380 0.36 +0.1
517,570 - LRK54_RS02380 0.36 -0.3
517,587 - LRK54_RS02380 0.38 -1.8
517,710 + LRK54_RS02380 0.47 -2.2
517,710 + LRK54_RS02380 0.47 -0.5
517,710 + LRK54_RS02380 0.47 -0.1
517,710 + LRK54_RS02380 0.47 -0.1
517,710 + LRK54_RS02380 0.47 +0.3
517,711 - LRK54_RS02380 0.47 -1.8
517,711 - LRK54_RS02380 0.47 -0.3
517,929 + LRK54_RS02380 0.64 -0.1

Or see this region's nucleotide sequence