Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21850

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS21840 and CA265_RS21845 are separated by 73 nucleotidesCA265_RS21845 and CA265_RS21850 are separated by 321 nucleotidesCA265_RS21850 and CA265_RS21855 are separated by 67 nucleotides CA265_RS21840: CA265_RS21840 - phosphohydrolase, at 5,367,918 to 5,368,562 _RS21840 CA265_RS21845: CA265_RS21845 - transcriptional regulator, at 5,368,636 to 5,368,917 _RS21845 CA265_RS21850: CA265_RS21850 - hypothetical protein, at 5,369,239 to 5,369,733 _RS21850 CA265_RS21855: CA265_RS21855 - RNA methyltransferase, at 5,369,801 to 5,370,979 _RS21855 Position (kb) 5369 5370Strain fitness (log2 ratio) -2 -1 0 1 2at 5368.343 kb on + strand, within CA265_RS21840at 5368.481 kb on + strand, within CA265_RS21840at 5368.515 kb on + strandat 5368.515 kb on + strandat 5368.553 kb on + strandat 5368.585 kb on + strandat 5368.708 kb on + strand, within CA265_RS21845at 5368.717 kb on + strand, within CA265_RS21845at 5368.770 kb on + strand, within CA265_RS21845at 5368.811 kb on - strand, within CA265_RS21845at 5368.832 kb on + strand, within CA265_RS21845at 5368.843 kb on - strand, within CA265_RS21845at 5368.873 kb on - strand, within CA265_RS21845at 5368.945 kb on - strandat 5368.951 kb on + strandat 5368.952 kb on - strandat 5368.953 kb on + strandat 5368.955 kb on + strandat 5369.005 kb on + strandat 5369.060 kb on - strandat 5369.116 kb on - strandat 5369.126 kb on - strandat 5369.154 kb on + strandat 5369.154 kb on + strandat 5369.155 kb on - strandat 5369.166 kb on - strandat 5369.174 kb on - strandat 5369.243 kb on + strandat 5369.243 kb on + strandat 5369.344 kb on - strand, within CA265_RS21850at 5369.344 kb on - strand, within CA265_RS21850at 5369.422 kb on - strand, within CA265_RS21850at 5369.440 kb on + strand, within CA265_RS21850at 5369.440 kb on + strand, within CA265_RS21850at 5369.441 kb on - strand, within CA265_RS21850at 5369.445 kb on + strand, within CA265_RS21850at 5369.447 kb on + strand, within CA265_RS21850at 5369.451 kb on + strand, within CA265_RS21850at 5369.451 kb on + strand, within CA265_RS21850at 5369.452 kb on - strand, within CA265_RS21850at 5369.485 kb on + strand, within CA265_RS21850at 5369.485 kb on + strand, within CA265_RS21850at 5369.510 kb on - strand, within CA265_RS21850at 5369.568 kb on - strand, within CA265_RS21850at 5369.573 kb on + strand, within CA265_RS21850at 5369.709 kb on + strandat 5369.756 kb on - strandat 5369.756 kb on - strandat 5369.775 kb on - strandat 5369.777 kb on + strandat 5369.779 kb on + strandat 5369.780 kb on - strandat 5369.783 kb on - strandat 5369.803 kb on - strandat 5369.838 kb on + strandat 5369.852 kb on + strandat 5369.852 kb on + strandat 5369.852 kb on + strandat 5369.853 kb on - strandat 5369.868 kb on - strandat 5369.873 kb on - strandat 5369.948 kb on - strand, within CA265_RS21855at 5369.948 kb on - strand, within CA265_RS21855at 5369.948 kb on - strand, within CA265_RS21855at 5369.959 kb on - strand, within CA265_RS21855at 5370.001 kb on - strand, within CA265_RS21855at 5370.012 kb on - strand, within CA265_RS21855at 5370.019 kb on + strand, within CA265_RS21855at 5370.019 kb on + strand, within CA265_RS21855at 5370.194 kb on + strand, within CA265_RS21855at 5370.194 kb on + strand, within CA265_RS21855at 5370.202 kb on + strand, within CA265_RS21855at 5370.221 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.275 kb on + strand, within CA265_RS21855at 5370.276 kb on - strand, within CA265_RS21855at 5370.276 kb on - strand, within CA265_RS21855at 5370.280 kb on + strand, within CA265_RS21855at 5370.280 kb on + strand, within CA265_RS21855at 5370.287 kb on - strand, within CA265_RS21855at 5370.308 kb on + strand, within CA265_RS21855at 5370.309 kb on - strand, within CA265_RS21855at 5370.382 kb on + strand, within CA265_RS21855at 5370.383 kb on - strand, within CA265_RS21855at 5370.445 kb on + strand, within CA265_RS21855at 5370.503 kb on - strand, within CA265_RS21855at 5370.537 kb on + strand, within CA265_RS21855at 5370.540 kb on - strand, within CA265_RS21855at 5370.545 kb on + strand, within CA265_RS21855at 5370.614 kb on + strand, within CA265_RS21855at 5370.615 kb on - strand, within CA265_RS21855at 5370.632 kb on + strand, within CA265_RS21855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
5,368,343 + CA265_RS21840 0.66 -1.3
5,368,481 + CA265_RS21840 0.87 -1.8
5,368,515 + +0.5
5,368,515 + -0.2
5,368,553 + -0.1
5,368,585 + -0.9
5,368,708 + CA265_RS21845 0.26 -1.8
5,368,717 + CA265_RS21845 0.29 -2.3
5,368,770 + CA265_RS21845 0.48 -1.9
5,368,811 - CA265_RS21845 0.62 -0.4
5,368,832 + CA265_RS21845 0.70 -1.8
5,368,843 - CA265_RS21845 0.73 +0.5
5,368,873 - CA265_RS21845 0.84 -2.0
5,368,945 - +0.0
5,368,951 + -1.8
5,368,952 - +0.8
5,368,953 + -2.0
5,368,955 + -0.4
5,369,005 + -1.6
5,369,060 - +0.3
5,369,116 - -0.8
5,369,126 - -0.0
5,369,154 + -0.3
5,369,154 + -0.5
5,369,155 - +1.7
5,369,166 - -0.2
5,369,174 - +0.6
5,369,243 + +1.5
5,369,243 + -2.0
5,369,344 - CA265_RS21850 0.21 -0.6
5,369,344 - CA265_RS21850 0.21 -0.5
5,369,422 - CA265_RS21850 0.37 +0.5
5,369,440 + CA265_RS21850 0.41 -0.3
5,369,440 + CA265_RS21850 0.41 -0.3
5,369,441 - CA265_RS21850 0.41 -0.5
5,369,445 + CA265_RS21850 0.42 -1.1
5,369,447 + CA265_RS21850 0.42 -1.0
5,369,451 + CA265_RS21850 0.43 -0.0
5,369,451 + CA265_RS21850 0.43 -0.7
5,369,452 - CA265_RS21850 0.43 -0.1
5,369,485 + CA265_RS21850 0.50 -1.3
5,369,485 + CA265_RS21850 0.50 -2.0
5,369,510 - CA265_RS21850 0.55 -0.6
5,369,568 - CA265_RS21850 0.66 -2.2
5,369,573 + CA265_RS21850 0.67 -0.3
5,369,709 + +0.3
5,369,756 - +1.1
5,369,756 - +1.3
5,369,775 - +1.1
5,369,777 + -1.2
5,369,779 + -0.3
5,369,780 - +1.4
5,369,783 - +0.9
5,369,803 - +0.9
5,369,838 + -0.9
5,369,852 + -0.6
5,369,852 + -0.9
5,369,852 + -0.7
5,369,853 - +0.9
5,369,868 - +0.1
5,369,873 - +0.6
5,369,948 - CA265_RS21855 0.12 +0.5
5,369,948 - CA265_RS21855 0.12 +2.5
5,369,948 - CA265_RS21855 0.12 +1.7
5,369,959 - CA265_RS21855 0.13 -0.3
5,370,001 - CA265_RS21855 0.17 -0.5
5,370,012 - CA265_RS21855 0.18 +0.7
5,370,019 + CA265_RS21855 0.18 +0.1
5,370,019 + CA265_RS21855 0.18 -1.2
5,370,194 + CA265_RS21855 0.33 -2.2
5,370,194 + CA265_RS21855 0.33 -1.6
5,370,202 + CA265_RS21855 0.34 -0.5
5,370,221 + CA265_RS21855 0.36 -0.5
5,370,275 + CA265_RS21855 0.40 -0.6
5,370,275 + CA265_RS21855 0.40 +0.1
5,370,275 + CA265_RS21855 0.40 -2.2
5,370,275 + CA265_RS21855 0.40 -0.3
5,370,275 + CA265_RS21855 0.40 -0.2
5,370,275 + CA265_RS21855 0.40 -0.3
5,370,276 - CA265_RS21855 0.40 -0.9
5,370,276 - CA265_RS21855 0.40 +2.5
5,370,280 + CA265_RS21855 0.41 +0.5
5,370,280 + CA265_RS21855 0.41 -1.1
5,370,287 - CA265_RS21855 0.41 +0.1
5,370,308 + CA265_RS21855 0.43 -0.4
5,370,309 - CA265_RS21855 0.43 +0.1
5,370,382 + CA265_RS21855 0.49 -0.2
5,370,383 - CA265_RS21855 0.49 -1.4
5,370,445 + CA265_RS21855 0.55 -0.7
5,370,503 - CA265_RS21855 0.60 -0.3
5,370,537 + CA265_RS21855 0.62 +0.3
5,370,540 - CA265_RS21855 0.63 -1.6
5,370,545 + CA265_RS21855 0.63 +0.2
5,370,614 + CA265_RS21855 0.69 -0.2
5,370,615 - CA265_RS21855 0.69 -0.4
5,370,632 + CA265_RS21855 0.70 -0.7

Or see this region's nucleotide sequence