Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21115 and CA265_RS21120 overlap by 32 nucleotides CA265_RS21120 and CA265_RS21125 are separated by 43 nucleotides CA265_RS21125 and CA265_RS21130 are separated by 36 nucleotides CA265_RS21130 and CA265_RS21135 are separated by 494 nucleotides
CA265_RS21115: CA265_RS21115 - hypothetical protein, at 5,202,339 to 5,202,557
_RS21115
CA265_RS21120: CA265_RS21120 - CPBP family intramembrane metalloprotease domain-containing protein, at 5,202,526 to 5,203,452
_RS21120
CA265_RS21125: CA265_RS21125 - tRNA dihydrouridine synthase DusB, at 5,203,496 to 5,204,503
_RS21125
CA265_RS21130: CA265_RS21130 - Co2+/Mg2+ efflux protein ApaG, at 5,204,540 to 5,204,926
_RS21130
CA265_RS21135: CA265_RS21135 - hypothetical protein, at 5,205,421 to 5,206,116
_RS21135
Position (kb) 5203
5204
5205 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.581 kb on - strand at 5203.313 kb on - strand, within CA265_RS21120 at 5203.442 kb on - strand at 5203.449 kb on + strand at 5203.467 kb on + strand at 5203.491 kb on - strand at 5203.563 kb on + strand at 5203.564 kb on - strand at 5203.583 kb on + strand at 5203.584 kb on - strand at 5203.587 kb on + strand at 5203.588 kb on - strand at 5203.616 kb on + strand, within CA265_RS21125 at 5203.616 kb on + strand, within CA265_RS21125 at 5203.617 kb on - strand, within CA265_RS21125 at 5203.796 kb on + strand, within CA265_RS21125 at 5203.819 kb on - strand, within CA265_RS21125 at 5203.822 kb on - strand, within CA265_RS21125 at 5203.826 kb on - strand, within CA265_RS21125 at 5203.888 kb on - strand, within CA265_RS21125 at 5203.891 kb on + strand, within CA265_RS21125 at 5203.891 kb on + strand, within CA265_RS21125 at 5203.892 kb on - strand, within CA265_RS21125 at 5203.892 kb on - strand, within CA265_RS21125 at 5203.906 kb on - strand, within CA265_RS21125 at 5203.912 kb on + strand, within CA265_RS21125 at 5204.031 kb on + strand, within CA265_RS21125 at 5204.031 kb on + strand, within CA265_RS21125 at 5204.032 kb on - strand, within CA265_RS21125 at 5204.119 kb on - strand, within CA265_RS21125 at 5204.141 kb on - strand, within CA265_RS21125 at 5204.163 kb on + strand, within CA265_RS21125 at 5204.164 kb on - strand, within CA265_RS21125 at 5204.221 kb on - strand, within CA265_RS21125 at 5204.276 kb on - strand, within CA265_RS21125 at 5204.302 kb on + strand, within CA265_RS21125 at 5204.366 kb on + strand, within CA265_RS21125 at 5204.402 kb on - strand, within CA265_RS21125 at 5204.426 kb on - strand at 5204.438 kb on + strand at 5204.477 kb on + strand at 5204.478 kb on - strand at 5204.523 kb on + strand at 5204.551 kb on + strand at 5204.552 kb on - strand at 5204.624 kb on + strand, within CA265_RS21130 at 5204.624 kb on + strand, within CA265_RS21130 at 5204.624 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.627 kb on - strand, within CA265_RS21130 at 5204.667 kb on - strand, within CA265_RS21130 at 5204.667 kb on - strand, within CA265_RS21130 at 5204.754 kb on + strand, within CA265_RS21130 at 5204.754 kb on + strand, within CA265_RS21130 at 5204.755 kb on - strand, within CA265_RS21130 at 5204.787 kb on + strand, within CA265_RS21130 at 5204.787 kb on + strand, within CA265_RS21130 at 5204.788 kb on - strand, within CA265_RS21130 at 5204.789 kb on + strand, within CA265_RS21130 at 5204.789 kb on + strand, within CA265_RS21130 at 5204.790 kb on - strand, within CA265_RS21130 at 5204.790 kb on - strand, within CA265_RS21130 at 5204.912 kb on + strand at 5204.913 kb on - strand at 5204.924 kb on + strand at 5204.925 kb on - strand at 5204.989 kb on + strand at 5205.071 kb on + strand at 5205.167 kb on - strand at 5205.167 kb on - strand at 5205.173 kb on + strand at 5205.190 kb on - strand at 5205.197 kb on + strand at 5205.214 kb on - strand at 5205.222 kb on + strand at 5205.223 kb on - strand at 5205.223 kb on - strand at 5205.226 kb on - strand at 5205.227 kb on + strand at 5205.227 kb on + strand at 5205.231 kb on + strand at 5205.232 kb on - strand at 5205.232 kb on - strand at 5205.455 kb on + strand at 5205.463 kb on + strand at 5205.481 kb on + strand at 5205.482 kb on - strand at 5205.497 kb on + strand, within CA265_RS21135 at 5205.498 kb on - strand, within CA265_RS21135
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 5,202,519 - CA265_RS21115 0.82 +1.1 5,202,519 - CA265_RS21115 0.82 -0.4 5,202,519 - CA265_RS21115 0.82 +0.2 5,202,519 - CA265_RS21115 0.82 +0.5 5,202,581 - -0.3 5,203,313 - CA265_RS21120 0.85 +0.8 5,203,442 - -0.1 5,203,449 + -0.2 5,203,467 + +0.4 5,203,491 - +0.4 5,203,563 + -0.4 5,203,564 - +0.4 5,203,583 + +0.1 5,203,584 - +0.6 5,203,587 + -0.5 5,203,588 - +0.7 5,203,616 + CA265_RS21125 0.12 +1.7 5,203,616 + CA265_RS21125 0.12 +0.5 5,203,617 - CA265_RS21125 0.12 +1.0 5,203,796 + CA265_RS21125 0.30 -0.9 5,203,819 - CA265_RS21125 0.32 +1.1 5,203,822 - CA265_RS21125 0.32 +1.7 5,203,826 - CA265_RS21125 0.33 +0.2 5,203,888 - CA265_RS21125 0.39 +1.0 5,203,891 + CA265_RS21125 0.39 -0.4 5,203,891 + CA265_RS21125 0.39 +1.2 5,203,892 - CA265_RS21125 0.39 +1.1 5,203,892 - CA265_RS21125 0.39 -0.6 5,203,906 - CA265_RS21125 0.41 +1.9 5,203,912 + CA265_RS21125 0.41 -0.4 5,204,031 + CA265_RS21125 0.53 -0.3 5,204,031 + CA265_RS21125 0.53 -0.7 5,204,032 - CA265_RS21125 0.53 -0.4 5,204,119 - CA265_RS21125 0.62 +0.7 5,204,141 - CA265_RS21125 0.64 +0.3 5,204,163 + CA265_RS21125 0.66 -1.9 5,204,164 - CA265_RS21125 0.66 +1.1 5,204,221 - CA265_RS21125 0.72 -0.7 5,204,276 - CA265_RS21125 0.77 -0.1 5,204,302 + CA265_RS21125 0.80 -1.1 5,204,366 + CA265_RS21125 0.86 -0.1 5,204,402 - CA265_RS21125 0.90 -1.0 5,204,426 - +0.6 5,204,438 + +0.6 5,204,477 + +1.2 5,204,478 - -0.3 5,204,523 + +0.6 5,204,551 + +1.0 5,204,552 - +0.0 5,204,624 + CA265_RS21130 0.22 +0.9 5,204,624 + CA265_RS21130 0.22 +0.7 5,204,624 + CA265_RS21130 0.22 +0.3 5,204,626 + CA265_RS21130 0.22 +1.0 5,204,626 + CA265_RS21130 0.22 +0.3 5,204,626 + CA265_RS21130 0.22 +0.9 5,204,626 + CA265_RS21130 0.22 +0.4 5,204,627 - CA265_RS21130 0.22 +0.1 5,204,667 - CA265_RS21130 0.33 +0.4 5,204,667 - CA265_RS21130 0.33 +1.0 5,204,754 + CA265_RS21130 0.55 +1.2 5,204,754 + CA265_RS21130 0.55 +0.5 5,204,755 - CA265_RS21130 0.56 +1.0 5,204,787 + CA265_RS21130 0.64 +0.8 5,204,787 + CA265_RS21130 0.64 +0.7 5,204,788 - CA265_RS21130 0.64 +0.7 5,204,789 + CA265_RS21130 0.64 +0.7 5,204,789 + CA265_RS21130 0.64 +0.7 5,204,790 - CA265_RS21130 0.65 -0.5 5,204,790 - CA265_RS21130 0.65 +0.9 5,204,912 + +1.8 5,204,913 - +0.0 5,204,924 + +0.3 5,204,925 - +0.8 5,204,989 + +0.8 5,205,071 + +0.0 5,205,167 - +0.8 5,205,167 - +0.1 5,205,173 + -0.6 5,205,190 - -0.0 5,205,197 + +0.1 5,205,214 - +0.9 5,205,222 + +3.1 5,205,223 - +1.1 5,205,223 - +0.3 5,205,226 - +1.0 5,205,227 + -0.3 5,205,227 + -0.1 5,205,231 + +0.7 5,205,232 - +1.0 5,205,232 - +0.8 5,205,455 + +0.3 5,205,463 + -0.9 5,205,481 + +1.2 5,205,482 - +0.8 5,205,497 + CA265_RS21135 0.11 +0.4 5,205,498 - CA265_RS21135 0.11 -0.6
Or see this region's nucleotide sequence