Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00895 and CA265_RS00900 are separated by 274 nucleotides CA265_RS00900 and CA265_RS00905 are separated by 195 nucleotides
CA265_RS00895: CA265_RS00895 - hypothetical protein, at 215,598 to 216,899
_RS00895
CA265_RS00900: CA265_RS00900 - catalase/peroxidase HPI, at 217,174 to 219,441
_RS00900
CA265_RS00905: CA265_RS00905 - hypothetical protein, at 219,637 to 224,775
_RS00905
Position (kb) 217
218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.199 kb on + strand, within CA265_RS00895 at 216.199 kb on + strand, within CA265_RS00895 at 216.268 kb on - strand at 216.303 kb on - strand, within CA265_RS00895 at 216.309 kb on + strand, within CA265_RS00895 at 216.310 kb on - strand, within CA265_RS00895 at 216.344 kb on + strand, within CA265_RS00895 at 216.446 kb on + strand, within CA265_RS00895 at 216.447 kb on - strand, within CA265_RS00895 at 216.450 kb on + strand, within CA265_RS00895 at 216.454 kb on + strand, within CA265_RS00895 at 216.478 kb on - strand, within CA265_RS00895 at 216.520 kb on + strand, within CA265_RS00895 at 216.554 kb on - strand, within CA265_RS00895 at 216.557 kb on + strand, within CA265_RS00895 at 216.619 kb on - strand, within CA265_RS00895 at 216.647 kb on + strand, within CA265_RS00895 at 216.648 kb on - strand, within CA265_RS00895 at 216.650 kb on + strand, within CA265_RS00895 at 216.668 kb on - strand, within CA265_RS00895 at 216.737 kb on + strand, within CA265_RS00895 at 216.743 kb on + strand, within CA265_RS00895 at 216.766 kb on - strand, within CA265_RS00895 at 216.771 kb on - strand at 216.833 kb on + strand at 216.834 kb on - strand at 216.842 kb on + strand at 216.916 kb on - strand at 216.916 kb on - strand at 216.916 kb on - strand at 216.917 kb on + strand at 216.917 kb on + strand at 216.918 kb on - strand at 217.041 kb on - strand at 217.049 kb on - strand at 217.051 kb on + strand at 217.059 kb on - strand at 217.063 kb on - strand at 217.079 kb on - strand at 217.092 kb on + strand at 217.121 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.170 kb on - strand at 217.174 kb on - strand at 217.233 kb on + strand at 217.238 kb on + strand at 217.238 kb on + strand at 217.238 kb on + strand at 217.284 kb on - strand at 217.394 kb on + strand at 217.447 kb on + strand, within CA265_RS00900 at 217.458 kb on - strand, within CA265_RS00900 at 217.462 kb on - strand, within CA265_RS00900 at 217.646 kb on + strand, within CA265_RS00900 at 217.747 kb on + strand, within CA265_RS00900 at 217.816 kb on - strand, within CA265_RS00900 at 217.816 kb on - strand, within CA265_RS00900 at 217.910 kb on + strand, within CA265_RS00900 at 217.913 kb on + strand, within CA265_RS00900 at 217.914 kb on - strand, within CA265_RS00900 at 217.914 kb on - strand, within CA265_RS00900 at 217.916 kb on - strand, within CA265_RS00900 at 217.916 kb on - strand, within CA265_RS00900 at 217.916 kb on - strand, within CA265_RS00900 at 218.024 kb on + strand, within CA265_RS00900 at 218.025 kb on - strand, within CA265_RS00900 at 218.136 kb on + strand, within CA265_RS00900 at 218.137 kb on - strand, within CA265_RS00900 at 218.140 kb on + strand, within CA265_RS00900 at 218.180 kb on + strand, within CA265_RS00900 at 218.220 kb on + strand, within CA265_RS00900 at 218.519 kb on + strand, within CA265_RS00900 at 218.775 kb on - strand, within CA265_RS00900 at 218.784 kb on - strand, within CA265_RS00900 at 218.787 kb on - strand, within CA265_RS00900 at 218.958 kb on - strand, within CA265_RS00900 at 219.071 kb on + strand, within CA265_RS00900 at 219.095 kb on + strand at 219.107 kb on + strand, within CA265_RS00900 at 219.158 kb on + strand, within CA265_RS00900 at 219.159 kb on - strand, within CA265_RS00900 at 219.197 kb on + strand, within CA265_RS00900 at 219.238 kb on - strand at 219.238 kb on - strand at 219.347 kb on + strand at 219.348 kb on - strand at 219.449 kb on + strand at 219.538 kb on - strand at 219.542 kb on + strand at 219.544 kb on + strand at 219.545 kb on - strand at 219.587 kb on - strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.590 kb on - strand at 219.590 kb on - strand at 219.635 kb on + strand at 219.687 kb on - strand at 219.726 kb on + strand at 219.787 kb on - strand at 219.858 kb on + strand at 220.122 kb on + strand at 220.228 kb on - strand, within CA265_RS00905 at 220.247 kb on - strand, within CA265_RS00905 at 220.254 kb on - strand, within CA265_RS00905 at 220.353 kb on - strand, within CA265_RS00905 at 220.383 kb on + strand, within CA265_RS00905 at 220.388 kb on + strand, within CA265_RS00905 at 220.393 kb on - strand, within CA265_RS00905 at 220.406 kb on - strand, within CA265_RS00905 at 220.406 kb on - strand, within CA265_RS00905 at 220.406 kb on - strand, within CA265_RS00905 at 220.406 kb on - strand, within CA265_RS00905 at 220.408 kb on + strand, within CA265_RS00905 at 220.410 kb on + strand, within CA265_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 216,199 + CA265_RS00895 0.46 -0.4 216,199 + CA265_RS00895 0.46 -1.6 216,268 - +0.8 216,303 - CA265_RS00895 0.54 -2.2 216,309 + CA265_RS00895 0.55 -0.9 216,310 - CA265_RS00895 0.55 +0.3 216,344 + CA265_RS00895 0.57 -1.2 216,446 + CA265_RS00895 0.65 +2.4 216,447 - CA265_RS00895 0.65 +0.6 216,450 + CA265_RS00895 0.65 +0.3 216,454 + CA265_RS00895 0.66 -0.7 216,478 - CA265_RS00895 0.68 -0.6 216,520 + CA265_RS00895 0.71 -0.7 216,554 - CA265_RS00895 0.73 -0.7 216,557 + CA265_RS00895 0.74 -0.2 216,619 - CA265_RS00895 0.78 +1.1 216,647 + CA265_RS00895 0.81 -0.7 216,648 - CA265_RS00895 0.81 -0.6 216,650 + CA265_RS00895 0.81 -0.9 216,668 - CA265_RS00895 0.82 -0.0 216,737 + CA265_RS00895 0.87 -1.0 216,743 + CA265_RS00895 0.88 +0.1 216,766 - CA265_RS00895 0.90 +0.3 216,771 - +0.5 216,833 + -1.1 216,834 - -2.2 216,842 + -1.3 216,916 - -0.7 216,916 - -1.1 216,916 - -0.9 216,917 + +0.5 216,917 + +0.1 216,918 - -0.0 217,041 - +0.9 217,049 - +0.3 217,051 + +0.6 217,059 - -0.2 217,063 - +1.8 217,079 - -1.7 217,092 + +0.8 217,121 + -0.4 217,169 + +1.3 217,169 + +0.2 217,169 + -1.2 217,170 - +0.3 217,174 - +0.3 217,233 + -2.1 217,238 + -0.5 217,238 + +0.2 217,238 + -0.4 217,284 - +0.4 217,394 + -0.7 217,447 + CA265_RS00900 0.12 -2.4 217,458 - CA265_RS00900 0.13 +0.0 217,462 - CA265_RS00900 0.13 -1.9 217,646 + CA265_RS00900 0.21 -1.4 217,747 + CA265_RS00900 0.25 -1.6 217,816 - CA265_RS00900 0.28 -1.4 217,816 - CA265_RS00900 0.28 +0.8 217,910 + CA265_RS00900 0.32 -0.0 217,913 + CA265_RS00900 0.33 +1.4 217,914 - CA265_RS00900 0.33 -1.2 217,914 - CA265_RS00900 0.33 -0.9 217,916 - CA265_RS00900 0.33 -1.7 217,916 - CA265_RS00900 0.33 -1.3 217,916 - CA265_RS00900 0.33 -1.6 218,024 + CA265_RS00900 0.37 +0.6 218,025 - CA265_RS00900 0.38 -3.1 218,136 + CA265_RS00900 0.42 -1.0 218,137 - CA265_RS00900 0.42 -0.5 218,140 + CA265_RS00900 0.43 +0.0 218,180 + CA265_RS00900 0.44 +0.0 218,220 + CA265_RS00900 0.46 +0.3 218,519 + CA265_RS00900 0.59 -1.4 218,775 - CA265_RS00900 0.71 -1.0 218,784 - CA265_RS00900 0.71 -1.9 218,787 - CA265_RS00900 0.71 +0.4 218,958 - CA265_RS00900 0.79 -0.7 219,071 + CA265_RS00900 0.84 -0.5 219,095 + +0.8 219,107 + CA265_RS00900 0.85 -1.0 219,158 + CA265_RS00900 0.87 -1.6 219,159 - CA265_RS00900 0.88 -3.5 219,197 + CA265_RS00900 0.89 -1.5 219,238 - -1.4 219,238 - -1.4 219,347 + +0.4 219,348 - -1.2 219,449 + +0.7 219,538 - +1.3 219,542 + +0.0 219,544 + -0.3 219,545 - +0.3 219,587 - -1.1 219,589 + +0.5 219,589 + +1.0 219,590 - -2.1 219,590 - -0.7 219,635 + +0.2 219,687 - -1.4 219,726 + +0.3 219,787 - +0.6 219,858 + -0.1 220,122 + +0.5 220,228 - CA265_RS00905 0.12 -0.2 220,247 - CA265_RS00905 0.12 -0.0 220,254 - CA265_RS00905 0.12 +1.2 220,353 - CA265_RS00905 0.14 -0.1 220,383 + CA265_RS00905 0.15 -0.7 220,388 + CA265_RS00905 0.15 -1.1 220,393 - CA265_RS00905 0.15 -0.5 220,406 - CA265_RS00905 0.15 -0.4 220,406 - CA265_RS00905 0.15 -0.1 220,406 - CA265_RS00905 0.15 +0.8 220,406 - CA265_RS00905 0.15 -1.0 220,408 + CA265_RS00905 0.15 -1.6 220,410 + CA265_RS00905 0.15 -0.5
Or see this region's nucleotide sequence