Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23090

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23085 and AO356_23090 are separated by 0 nucleotidesAO356_23090 and AO356_23095 are separated by 181 nucleotides AO356_23085: AO356_23085 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data), at 5,165,485 to 5,166,759 _23085 AO356_23090: AO356_23090 - dihydropyrimidine dehydrogenase, at 5,166,760 to 5,168,127 _23090 AO356_23095: AO356_23095 - Dihydropyrimidinase (EC 3.5.2.2) (from data), at 5,168,309 to 5,169,748 _23095 Position (kb) 5166 5167 5168 5169Strain fitness (log2 ratio) -3 -2 -1 0 1at 5165.760 kb on - strand, within AO356_23085at 5165.774 kb on + strand, within AO356_23085at 5165.774 kb on + strand, within AO356_23085at 5165.774 kb on + strand, within AO356_23085at 5166.260 kb on + strand, within AO356_23085at 5166.260 kb on + strand, within AO356_23085at 5166.260 kb on + strand, within AO356_23085at 5166.261 kb on - strand, within AO356_23085at 5166.261 kb on - strand, within AO356_23085at 5166.294 kb on - strand, within AO356_23085at 5166.294 kb on - strand, within AO356_23085at 5166.569 kb on + strand, within AO356_23085at 5166.570 kb on - strand, within AO356_23085at 5166.674 kb on + strandat 5166.675 kb on - strandat 5166.675 kb on - strandat 5166.761 kb on + strandat 5166.777 kb on + strandat 5166.778 kb on - strandat 5167.214 kb on + strand, within AO356_23090at 5167.355 kb on + strand, within AO356_23090at 5167.355 kb on + strand, within AO356_23090at 5167.355 kb on + strand, within AO356_23090at 5167.355 kb on + strand, within AO356_23090at 5167.356 kb on - strand, within AO356_23090at 5167.571 kb on + strand, within AO356_23090at 5167.572 kb on - strand, within AO356_23090at 5167.586 kb on + strand, within AO356_23090at 5167.994 kb on + strandat 5168.001 kb on - strandat 5168.394 kb on + strandat 5168.395 kb on - strandat 5168.614 kb on - strand, within AO356_23095at 5168.892 kb on + strand, within AO356_23095at 5168.971 kb on - strand, within AO356_23095at 5168.997 kb on + strand, within AO356_23095at 5168.997 kb on + strand, within AO356_23095at 5169.042 kb on + strand, within AO356_23095at 5169.042 kb on + strand, within AO356_23095at 5169.043 kb on - strand, within AO356_23095at 5169.043 kb on - strand, within AO356_23095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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5,165,760 - AO356_23085 0.22 -0.2
5,165,774 + AO356_23085 0.23 +0.5
5,165,774 + AO356_23085 0.23 -0.7
5,165,774 + AO356_23085 0.23 +0.3
5,166,260 + AO356_23085 0.61 -0.8
5,166,260 + AO356_23085 0.61 +0.3
5,166,260 + AO356_23085 0.61 -0.7
5,166,261 - AO356_23085 0.61 +0.2
5,166,261 - AO356_23085 0.61 +1.0
5,166,294 - AO356_23085 0.63 -0.2
5,166,294 - AO356_23085 0.63 +0.3
5,166,569 + AO356_23085 0.85 +1.0
5,166,570 - AO356_23085 0.85 -1.2
5,166,674 + +0.0
5,166,675 - +0.7
5,166,675 - -0.1
5,166,761 + +0.1
5,166,777 + +0.2
5,166,778 - +0.3
5,167,214 + AO356_23090 0.33 +0.2
5,167,355 + AO356_23090 0.43 +0.9
5,167,355 + AO356_23090 0.43 -0.3
5,167,355 + AO356_23090 0.43 +0.9
5,167,355 + AO356_23090 0.43 +0.1
5,167,356 - AO356_23090 0.44 +0.3
5,167,571 + AO356_23090 0.59 +0.8
5,167,572 - AO356_23090 0.59 -0.3
5,167,586 + AO356_23090 0.60 +0.2
5,167,994 + +0.7
5,168,001 - -3.1
5,168,394 + +0.3
5,168,395 - -0.9
5,168,614 - AO356_23095 0.21 -0.4
5,168,892 + AO356_23095 0.40 +0.0
5,168,971 - AO356_23095 0.46 +0.3
5,168,997 + AO356_23095 0.48 -1.0
5,168,997 + AO356_23095 0.48 +1.0
5,169,042 + AO356_23095 0.51 +0.3
5,169,042 + AO356_23095 0.51 +1.2
5,169,043 - AO356_23095 0.51 +0.9
5,169,043 - AO356_23095 0.51 +0.5

Or see this region's nucleotide sequence