Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19265

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19260 and AO356_19265 are separated by 144 nucleotidesAO356_19265 and AO356_19270 are separated by 160 nucleotidesAO356_19270 and AO356_19275 are separated by 19 nucleotidesAO356_19275 and AO356_19280 are separated by 173 nucleotidesAO356_19280 and AO356_19285 are separated by 17 nucleotidesAO356_19285 and AO356_19290 are separated by 92 nucleotides AO356_19260: AO356_19260 - sodium transporter, at 4,324,529 to 4,325,494 _19260 AO356_19265: AO356_19265 - recombination-associated protein RdgC, at 4,325,639 to 4,326,559 _19265 AO356_19270: AO356_19270 - tRNA-Val, at 4,326,720 to 4,326,795 _19270 AO356_19275: AO356_19275 - tRNA-Asp, at 4,326,815 to 4,326,891 _19275 AO356_19280: AO356_19280 - tRNA-Val, at 4,327,065 to 4,327,140 _19280 AO356_19285: AO356_19285 - tRNA-Asp, at 4,327,158 to 4,327,234 _19285 AO356_19290: AO356_19290 - catalase, at 4,327,327 to 4,328,463 _19290 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -1 0 1at 4324.774 kb on - strand, within AO356_19260at 4324.774 kb on - strand, within AO356_19260at 4324.892 kb on + strand, within AO356_19260at 4324.892 kb on + strand, within AO356_19260at 4324.893 kb on - strand, within AO356_19260at 4325.190 kb on - strand, within AO356_19260at 4325.190 kb on - strand, within AO356_19260at 4325.446 kb on - strandat 4325.455 kb on + strandat 4325.455 kb on + strandat 4325.455 kb on + strandat 4325.456 kb on - strandat 4325.456 kb on - strandat 4325.456 kb on - strandat 4325.456 kb on - strandat 4325.456 kb on - strandat 4325.456 kb on - strandat 4325.506 kb on + strandat 4325.506 kb on + strandat 4325.507 kb on - strandat 4325.507 kb on - strandat 4325.509 kb on + strandat 4325.509 kb on + strandat 4325.509 kb on + strandat 4325.510 kb on - strandat 4325.510 kb on - strandat 4325.512 kb on + strandat 4325.512 kb on + strandat 4325.512 kb on + strandat 4325.512 kb on + strandat 4325.513 kb on - strandat 4325.526 kb on - strandat 4325.526 kb on - strandat 4325.526 kb on - strandat 4325.589 kb on + strandat 4325.589 kb on + strandat 4325.589 kb on + strandat 4325.627 kb on + strandat 4325.640 kb on + strandat 4325.640 kb on + strandat 4325.640 kb on + strandat 4325.640 kb on + strandat 4325.641 kb on - strandat 4325.641 kb on - strandat 4325.641 kb on - strandat 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.876 kb on + strand, within AO356_19265at 4325.877 kb on - strand, within AO356_19265at 4326.259 kb on + strand, within AO356_19265at 4326.260 kb on - strand, within AO356_19265at 4326.328 kb on + strand, within AO356_19265at 4326.435 kb on + strand, within AO356_19265at 4326.435 kb on + strand, within AO356_19265at 4326.436 kb on - strand, within AO356_19265at 4326.534 kb on + strandat 4326.535 kb on - strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.538 kb on + strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.539 kb on - strandat 4326.579 kb on + strandat 4326.580 kb on - strandat 4326.580 kb on - strandat 4326.580 kb on - strandat 4326.594 kb on + strandat 4326.613 kb on + strandat 4326.660 kb on + strandat 4326.693 kb on + strandat 4326.892 kb on + strandat 4327.010 kb on + strandat 4327.010 kb on + strandat 4327.073 kb on - strand, within AO356_19280at 4327.154 kb on - strandat 4327.166 kb on - strand, within AO356_19285at 4327.329 kb on - strandat 4327.373 kb on + strandat 4327.373 kb on + strandat 4327.374 kb on - strandat 4327.374 kb on - strandat 4327.374 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
4,324,774 - AO356_19260 0.25 +0.2
4,324,774 - AO356_19260 0.25 -0.9
4,324,892 + AO356_19260 0.38 -0.2
4,324,892 + AO356_19260 0.38 +0.7
4,324,893 - AO356_19260 0.38 -0.3
4,325,190 - AO356_19260 0.68 +0.3
4,325,190 - AO356_19260 0.68 -0.8
4,325,446 - -0.7
4,325,455 + +0.5
4,325,455 + -0.4
4,325,455 + +0.4
4,325,456 - -0.7
4,325,456 - +0.0
4,325,456 - -1.0
4,325,456 - +0.4
4,325,456 - +0.3
4,325,456 - +0.6
4,325,506 + +0.3
4,325,506 + +0.1
4,325,507 - +0.6
4,325,507 - +0.7
4,325,509 + -0.8
4,325,509 + +0.2
4,325,509 + +1.1
4,325,510 - +0.4
4,325,510 - -0.4
4,325,512 + +0.2
4,325,512 + -0.2
4,325,512 + -0.2
4,325,512 + -0.5
4,325,513 - -0.1
4,325,526 - +0.0
4,325,526 - +1.2
4,325,526 - +0.3
4,325,589 + +1.1
4,325,589 + -0.1
4,325,589 + -0.2
4,325,627 + +0.5
4,325,640 + +0.1
4,325,640 + +0.8
4,325,640 + +0.7
4,325,640 + -0.1
4,325,641 - +0.9
4,325,641 - +0.6
4,325,641 - -0.5
4,325,876 + AO356_19265 0.26 -0.7
4,325,876 + AO356_19265 0.26 -0.4
4,325,876 + AO356_19265 0.26 +0.8
4,325,876 + AO356_19265 0.26 +0.4
4,325,876 + AO356_19265 0.26 -1.1
4,325,876 + AO356_19265 0.26 +1.4
4,325,876 + AO356_19265 0.26 +1.4
4,325,877 - AO356_19265 0.26 -0.3
4,326,259 + AO356_19265 0.67 +0.9
4,326,260 - AO356_19265 0.67 +1.0
4,326,328 + AO356_19265 0.75 +0.7
4,326,435 + AO356_19265 0.86 -0.1
4,326,435 + AO356_19265 0.86 +0.4
4,326,436 - AO356_19265 0.87 +0.9
4,326,534 + +0.9
4,326,535 - +0.9
4,326,538 + +0.1
4,326,538 + +1.1
4,326,538 + -0.0
4,326,538 + +1.4
4,326,538 + +0.6
4,326,538 + +0.5
4,326,538 + +1.0
4,326,538 + +0.7
4,326,538 + +0.8
4,326,538 + +1.2
4,326,538 + +0.8
4,326,539 - -0.1
4,326,539 - +0.4
4,326,539 - -0.3
4,326,539 - +0.9
4,326,539 - +0.9
4,326,539 - +0.5
4,326,539 - -0.1
4,326,579 + +0.7
4,326,580 - -0.3
4,326,580 - +0.9
4,326,580 - -0.3
4,326,594 + +1.2
4,326,613 + +0.0
4,326,660 + +1.3
4,326,693 + -0.3
4,326,892 + -0.8
4,327,010 + +0.4
4,327,010 + +0.1
4,327,073 - AO356_19280 0.11 +1.2
4,327,154 - +0.5
4,327,166 - AO356_19285 0.10 +0.1
4,327,329 - +1.0
4,327,373 + +0.0
4,327,373 + -0.5
4,327,374 - -0.3
4,327,374 - -0.2
4,327,374 - +0.1

Or see this region's nucleotide sequence