Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18580

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18565 and AO356_18570 are separated by 219 nucleotidesAO356_18570 and AO356_18575 are separated by 136 nucleotidesAO356_18575 and AO356_18580 overlap by 4 nucleotidesAO356_18580 and AO356_18585 are separated by 13 nucleotides AO356_18565: AO356_18565 - amidase, at 4,175,947 to 4,177,536 _18565 AO356_18570: AO356_18570 - hypothetical protein, at 4,177,756 to 4,178,082 _18570 AO356_18575: AO356_18575 - hypothetical protein, at 4,178,219 to 4,178,533 _18575 AO356_18580: AO356_18580 - hypothetical protein, at 4,178,530 to 4,179,240 _18580 AO356_18585: AO356_18585 - LysR family transcriptional regulator, at 4,179,254 to 4,180,201 _18585 Position (kb) 4178 4179 4180Strain fitness (log2 ratio) -1 0 1at 4177.587 kb on + strandat 4177.587 kb on + strandat 4177.588 kb on - strandat 4177.588 kb on - strandat 4177.638 kb on + strandat 4177.639 kb on - strandat 4177.643 kb on + strandat 4177.709 kb on + strandat 4177.752 kb on + strandat 4177.752 kb on + strandat 4177.752 kb on + strandat 4177.753 kb on - strandat 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4177.837 kb on + strand, within AO356_18570at 4178.023 kb on + strand, within AO356_18570at 4178.023 kb on + strand, within AO356_18570at 4178.023 kb on + strand, within AO356_18570at 4178.024 kb on - strand, within AO356_18570at 4178.024 kb on - strand, within AO356_18570at 4178.024 kb on - strand, within AO356_18570at 4178.024 kb on - strand, within AO356_18570at 4178.024 kb on - strand, within AO356_18570at 4178.170 kb on + strandat 4178.170 kb on + strandat 4178.171 kb on - strandat 4178.171 kb on - strandat 4178.171 kb on - strandat 4178.171 kb on - strandat 4178.217 kb on + strandat 4178.217 kb on + strandat 4178.218 kb on - strandat 4178.220 kb on + strandat 4178.220 kb on + strandat 4178.220 kb on + strandat 4178.220 kb on + strandat 4178.221 kb on - strandat 4178.221 kb on - strandat 4178.221 kb on - strandat 4178.221 kb on - strandat 4178.241 kb on + strandat 4178.241 kb on + strandat 4178.241 kb on + strandat 4178.241 kb on + strandat 4178.241 kb on + strandat 4178.242 kb on - strandat 4178.242 kb on - strandat 4178.242 kb on - strandat 4178.269 kb on + strand, within AO356_18575at 4178.269 kb on + strand, within AO356_18575at 4178.270 kb on - strand, within AO356_18575at 4178.283 kb on + strand, within AO356_18575at 4178.283 kb on + strand, within AO356_18575at 4178.284 kb on - strand, within AO356_18575at 4178.284 kb on - strand, within AO356_18575at 4178.367 kb on + strand, within AO356_18575at 4178.367 kb on + strand, within AO356_18575at 4178.368 kb on - strand, within AO356_18575at 4178.377 kb on + strand, within AO356_18575at 4178.377 kb on + strand, within AO356_18575at 4178.377 kb on + strand, within AO356_18575at 4178.378 kb on - strand, within AO356_18575at 4178.378 kb on - strand, within AO356_18575at 4178.378 kb on - strand, within AO356_18575at 4178.378 kb on - strand, within AO356_18575at 4178.378 kb on - strand, within AO356_18575at 4178.418 kb on - strand, within AO356_18575at 4178.472 kb on + strand, within AO356_18575at 4178.753 kb on + strand, within AO356_18580at 4178.753 kb on + strand, within AO356_18580at 4178.753 kb on + strand, within AO356_18580at 4178.753 kb on + strand, within AO356_18580at 4178.753 kb on + strand, within AO356_18580at 4178.753 kb on + strand, within AO356_18580at 4178.754 kb on - strand, within AO356_18580at 4178.754 kb on - strand, within AO356_18580at 4178.754 kb on - strand, within AO356_18580at 4178.780 kb on + strand, within AO356_18580at 4178.781 kb on - strand, within AO356_18580at 4178.930 kb on + strand, within AO356_18580at 4178.930 kb on + strand, within AO356_18580at 4178.930 kb on + strand, within AO356_18580at 4178.930 kb on + strand, within AO356_18580at 4178.931 kb on - strand, within AO356_18580at 4178.931 kb on - strand, within AO356_18580at 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.277 kb on + strandat 4179.278 kb on - strandat 4179.300 kb on + strandat 4179.507 kb on - strand, within AO356_18585at 4179.507 kb on - strand, within AO356_18585at 4179.835 kb on - strand, within AO356_18585at 4179.851 kb on + strand, within AO356_18585at 4179.851 kb on + strand, within AO356_18585at 4179.852 kb on - strand, within AO356_18585at 4179.954 kb on + strand, within AO356_18585at 4179.954 kb on + strand, within AO356_18585at 4179.963 kb on + strand, within AO356_18585at 4179.964 kb on - strand, within AO356_18585at 4180.100 kb on + strand, within AO356_18585at 4180.100 kb on + strand, within AO356_18585at 4180.101 kb on - strand, within AO356_18585at 4180.101 kb on - strand, within AO356_18585

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,177,587 + -0.9
4,177,587 + +0.5
4,177,588 - -0.1
4,177,588 - +0.5
4,177,638 + +0.3
4,177,639 - -1.6
4,177,643 + +0.6
4,177,709 + -0.2
4,177,752 + +0.5
4,177,752 + +0.0
4,177,752 + -0.2
4,177,753 - +0.7
4,177,837 + AO356_18570 0.25 -1.0
4,177,837 + AO356_18570 0.25 +0.7
4,177,837 + AO356_18570 0.25 -1.1
4,177,837 + AO356_18570 0.25 +0.1
4,177,837 + AO356_18570 0.25 +0.4
4,177,837 + AO356_18570 0.25 -0.3
4,177,837 + AO356_18570 0.25 -0.3
4,177,837 + AO356_18570 0.25 +0.4
4,178,023 + AO356_18570 0.82 +0.2
4,178,023 + AO356_18570 0.82 +0.1
4,178,023 + AO356_18570 0.82 +1.3
4,178,024 - AO356_18570 0.82 -0.1
4,178,024 - AO356_18570 0.82 +0.4
4,178,024 - AO356_18570 0.82 +0.7
4,178,024 - AO356_18570 0.82 +0.2
4,178,024 - AO356_18570 0.82 +0.1
4,178,170 + -0.3
4,178,170 + +0.6
4,178,171 - -0.7
4,178,171 - +0.2
4,178,171 - +0.3
4,178,171 - -0.8
4,178,217 + -0.1
4,178,217 + -0.2
4,178,218 - -0.9
4,178,220 + +0.4
4,178,220 + +0.4
4,178,220 + -0.5
4,178,220 + -0.9
4,178,221 - -0.1
4,178,221 - -0.3
4,178,221 - +0.1
4,178,221 - +0.5
4,178,241 + +0.1
4,178,241 + -0.1
4,178,241 + +0.1
4,178,241 + +0.1
4,178,241 + +0.1
4,178,242 - -0.2
4,178,242 - -0.5
4,178,242 - +0.9
4,178,269 + AO356_18575 0.16 +0.1
4,178,269 + AO356_18575 0.16 +0.8
4,178,270 - AO356_18575 0.16 +0.3
4,178,283 + AO356_18575 0.20 -0.2
4,178,283 + AO356_18575 0.20 -0.5
4,178,284 - AO356_18575 0.21 +0.6
4,178,284 - AO356_18575 0.21 -0.8
4,178,367 + AO356_18575 0.47 +0.4
4,178,367 + AO356_18575 0.47 -0.3
4,178,368 - AO356_18575 0.47 +0.9
4,178,377 + AO356_18575 0.50 +0.9
4,178,377 + AO356_18575 0.50 +0.2
4,178,377 + AO356_18575 0.50 -0.4
4,178,378 - AO356_18575 0.50 +0.2
4,178,378 - AO356_18575 0.50 +0.4
4,178,378 - AO356_18575 0.50 -0.2
4,178,378 - AO356_18575 0.50 +0.2
4,178,378 - AO356_18575 0.50 +0.5
4,178,418 - AO356_18575 0.63 +0.5
4,178,472 + AO356_18575 0.80 -0.2
4,178,753 + AO356_18580 0.31 -0.0
4,178,753 + AO356_18580 0.31 +0.7
4,178,753 + AO356_18580 0.31 -0.0
4,178,753 + AO356_18580 0.31 +0.3
4,178,753 + AO356_18580 0.31 +0.2
4,178,753 + AO356_18580 0.31 +0.0
4,178,754 - AO356_18580 0.32 +0.4
4,178,754 - AO356_18580 0.32 +0.5
4,178,754 - AO356_18580 0.32 +0.8
4,178,780 + AO356_18580 0.35 -0.3
4,178,781 - AO356_18580 0.35 +0.1
4,178,930 + AO356_18580 0.56 -1.3
4,178,930 + AO356_18580 0.56 +0.7
4,178,930 + AO356_18580 0.56 -0.1
4,178,930 + AO356_18580 0.56 +0.3
4,178,931 - AO356_18580 0.56 +0.3
4,178,931 - AO356_18580 0.56 +0.2
4,179,277 + +0.0
4,179,277 + -0.3
4,179,277 + +0.2
4,179,277 + -0.4
4,179,277 + +0.6
4,179,277 + +0.1
4,179,277 + -0.1
4,179,278 - +0.0
4,179,300 + -0.5
4,179,507 - AO356_18585 0.27 +0.2
4,179,507 - AO356_18585 0.27 +1.0
4,179,835 - AO356_18585 0.61 +0.0
4,179,851 + AO356_18585 0.63 +1.0
4,179,851 + AO356_18585 0.63 +0.4
4,179,852 - AO356_18585 0.63 +0.2
4,179,954 + AO356_18585 0.74 +0.0
4,179,954 + AO356_18585 0.74 -0.3
4,179,963 + AO356_18585 0.75 +1.5
4,179,964 - AO356_18585 0.75 +0.1
4,180,100 + AO356_18585 0.89 +0.0
4,180,100 + AO356_18585 0.89 +0.5
4,180,101 - AO356_18585 0.89 -0.4
4,180,101 - AO356_18585 0.89 +0.6

Or see this region's nucleotide sequence