Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18565 and AO356_18570 are separated by 219 nucleotides AO356_18570 and AO356_18575 are separated by 136 nucleotides AO356_18575 and AO356_18580 overlap by 4 nucleotides AO356_18580 and AO356_18585 are separated by 13 nucleotides
AO356_18565: AO356_18565 - amidase, at 4,175,947 to 4,177,536
_18565
AO356_18570: AO356_18570 - hypothetical protein, at 4,177,756 to 4,178,082
_18570
AO356_18575: AO356_18575 - hypothetical protein, at 4,178,219 to 4,178,533
_18575
AO356_18580: AO356_18580 - hypothetical protein, at 4,178,530 to 4,179,240
_18580
AO356_18585: AO356_18585 - LysR family transcriptional regulator, at 4,179,254 to 4,180,201
_18585
Position (kb)
4178
4179
4180 Strain fitness (log2 ratio)
-1
0
1 at 4177.587 kb on + strand at 4177.587 kb on + strand at 4177.588 kb on - strand at 4177.588 kb on - strand at 4177.638 kb on + strand at 4177.639 kb on - strand at 4177.643 kb on + strand at 4177.709 kb on + strand at 4177.752 kb on + strand at 4177.752 kb on + strand at 4177.752 kb on + strand at 4177.753 kb on - strand at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4177.837 kb on + strand, within AO356_18570 at 4178.023 kb on + strand, within AO356_18570 at 4178.023 kb on + strand, within AO356_18570 at 4178.023 kb on + strand, within AO356_18570 at 4178.024 kb on - strand, within AO356_18570 at 4178.024 kb on - strand, within AO356_18570 at 4178.024 kb on - strand, within AO356_18570 at 4178.024 kb on - strand, within AO356_18570 at 4178.024 kb on - strand, within AO356_18570 at 4178.170 kb on + strand at 4178.170 kb on + strand at 4178.171 kb on - strand at 4178.171 kb on - strand at 4178.171 kb on - strand at 4178.171 kb on - strand at 4178.217 kb on + strand at 4178.217 kb on + strand at 4178.218 kb on - strand at 4178.220 kb on + strand at 4178.220 kb on + strand at 4178.220 kb on + strand at 4178.220 kb on + strand at 4178.221 kb on - strand at 4178.221 kb on - strand at 4178.221 kb on - strand at 4178.221 kb on - strand at 4178.241 kb on + strand at 4178.241 kb on + strand at 4178.241 kb on + strand at 4178.241 kb on + strand at 4178.241 kb on + strand at 4178.242 kb on - strand at 4178.242 kb on - strand at 4178.242 kb on - strand at 4178.269 kb on + strand, within AO356_18575 at 4178.269 kb on + strand, within AO356_18575 at 4178.270 kb on - strand, within AO356_18575 at 4178.283 kb on + strand, within AO356_18575 at 4178.283 kb on + strand, within AO356_18575 at 4178.284 kb on - strand, within AO356_18575 at 4178.284 kb on - strand, within AO356_18575 at 4178.367 kb on + strand, within AO356_18575 at 4178.367 kb on + strand, within AO356_18575 at 4178.368 kb on - strand, within AO356_18575 at 4178.377 kb on + strand, within AO356_18575 at 4178.377 kb on + strand, within AO356_18575 at 4178.377 kb on + strand, within AO356_18575 at 4178.378 kb on - strand, within AO356_18575 at 4178.378 kb on - strand, within AO356_18575 at 4178.378 kb on - strand, within AO356_18575 at 4178.378 kb on - strand, within AO356_18575 at 4178.378 kb on - strand, within AO356_18575 at 4178.418 kb on - strand, within AO356_18575 at 4178.472 kb on + strand, within AO356_18575 at 4178.753 kb on + strand, within AO356_18580 at 4178.753 kb on + strand, within AO356_18580 at 4178.753 kb on + strand, within AO356_18580 at 4178.753 kb on + strand, within AO356_18580 at 4178.753 kb on + strand, within AO356_18580 at 4178.753 kb on + strand, within AO356_18580 at 4178.754 kb on - strand, within AO356_18580 at 4178.754 kb on - strand, within AO356_18580 at 4178.754 kb on - strand, within AO356_18580 at 4178.780 kb on + strand, within AO356_18580 at 4178.781 kb on - strand, within AO356_18580 at 4178.930 kb on + strand, within AO356_18580 at 4178.930 kb on + strand, within AO356_18580 at 4178.930 kb on + strand, within AO356_18580 at 4178.930 kb on + strand, within AO356_18580 at 4178.931 kb on - strand, within AO356_18580 at 4178.931 kb on - strand, within AO356_18580 at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.277 kb on + strand at 4179.278 kb on - strand at 4179.300 kb on + strand at 4179.507 kb on - strand, within AO356_18585 at 4179.507 kb on - strand, within AO356_18585 at 4179.835 kb on - strand, within AO356_18585 at 4179.851 kb on + strand, within AO356_18585 at 4179.851 kb on + strand, within AO356_18585 at 4179.852 kb on - strand, within AO356_18585 at 4179.954 kb on + strand, within AO356_18585 at 4179.954 kb on + strand, within AO356_18585 at 4179.963 kb on + strand, within AO356_18585 at 4179.964 kb on - strand, within AO356_18585 at 4180.100 kb on + strand, within AO356_18585 at 4180.100 kb on + strand, within AO356_18585 at 4180.101 kb on - strand, within AO356_18585 at 4180.101 kb on - strand, within AO356_18585
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 4,177,587 + -0.9 4,177,587 + +0.5 4,177,588 - -0.1 4,177,588 - +0.5 4,177,638 + +0.3 4,177,639 - -1.6 4,177,643 + +0.6 4,177,709 + -0.2 4,177,752 + +0.5 4,177,752 + +0.0 4,177,752 + -0.2 4,177,753 - +0.7 4,177,837 + AO356_18570 0.25 -1.0 4,177,837 + AO356_18570 0.25 +0.7 4,177,837 + AO356_18570 0.25 -1.1 4,177,837 + AO356_18570 0.25 +0.1 4,177,837 + AO356_18570 0.25 +0.4 4,177,837 + AO356_18570 0.25 -0.3 4,177,837 + AO356_18570 0.25 -0.3 4,177,837 + AO356_18570 0.25 +0.4 4,178,023 + AO356_18570 0.82 +0.2 4,178,023 + AO356_18570 0.82 +0.1 4,178,023 + AO356_18570 0.82 +1.3 4,178,024 - AO356_18570 0.82 -0.1 4,178,024 - AO356_18570 0.82 +0.4 4,178,024 - AO356_18570 0.82 +0.7 4,178,024 - AO356_18570 0.82 +0.2 4,178,024 - AO356_18570 0.82 +0.1 4,178,170 + -0.3 4,178,170 + +0.6 4,178,171 - -0.7 4,178,171 - +0.2 4,178,171 - +0.3 4,178,171 - -0.8 4,178,217 + -0.1 4,178,217 + -0.2 4,178,218 - -0.9 4,178,220 + +0.4 4,178,220 + +0.4 4,178,220 + -0.5 4,178,220 + -0.9 4,178,221 - -0.1 4,178,221 - -0.3 4,178,221 - +0.1 4,178,221 - +0.5 4,178,241 + +0.1 4,178,241 + -0.1 4,178,241 + +0.1 4,178,241 + +0.1 4,178,241 + +0.1 4,178,242 - -0.2 4,178,242 - -0.5 4,178,242 - +0.9 4,178,269 + AO356_18575 0.16 +0.1 4,178,269 + AO356_18575 0.16 +0.8 4,178,270 - AO356_18575 0.16 +0.3 4,178,283 + AO356_18575 0.20 -0.2 4,178,283 + AO356_18575 0.20 -0.5 4,178,284 - AO356_18575 0.21 +0.6 4,178,284 - AO356_18575 0.21 -0.8 4,178,367 + AO356_18575 0.47 +0.4 4,178,367 + AO356_18575 0.47 -0.3 4,178,368 - AO356_18575 0.47 +0.9 4,178,377 + AO356_18575 0.50 +0.9 4,178,377 + AO356_18575 0.50 +0.2 4,178,377 + AO356_18575 0.50 -0.4 4,178,378 - AO356_18575 0.50 +0.2 4,178,378 - AO356_18575 0.50 +0.4 4,178,378 - AO356_18575 0.50 -0.2 4,178,378 - AO356_18575 0.50 +0.2 4,178,378 - AO356_18575 0.50 +0.5 4,178,418 - AO356_18575 0.63 +0.5 4,178,472 + AO356_18575 0.80 -0.2 4,178,753 + AO356_18580 0.31 -0.0 4,178,753 + AO356_18580 0.31 +0.7 4,178,753 + AO356_18580 0.31 -0.0 4,178,753 + AO356_18580 0.31 +0.3 4,178,753 + AO356_18580 0.31 +0.2 4,178,753 + AO356_18580 0.31 +0.0 4,178,754 - AO356_18580 0.32 +0.4 4,178,754 - AO356_18580 0.32 +0.5 4,178,754 - AO356_18580 0.32 +0.8 4,178,780 + AO356_18580 0.35 -0.3 4,178,781 - AO356_18580 0.35 +0.1 4,178,930 + AO356_18580 0.56 -1.3 4,178,930 + AO356_18580 0.56 +0.7 4,178,930 + AO356_18580 0.56 -0.1 4,178,930 + AO356_18580 0.56 +0.3 4,178,931 - AO356_18580 0.56 +0.3 4,178,931 - AO356_18580 0.56 +0.2 4,179,277 + +0.0 4,179,277 + -0.3 4,179,277 + +0.2 4,179,277 + -0.4 4,179,277 + +0.6 4,179,277 + +0.1 4,179,277 + -0.1 4,179,278 - +0.0 4,179,300 + -0.5 4,179,507 - AO356_18585 0.27 +0.2 4,179,507 - AO356_18585 0.27 +1.0 4,179,835 - AO356_18585 0.61 +0.0 4,179,851 + AO356_18585 0.63 +1.0 4,179,851 + AO356_18585 0.63 +0.4 4,179,852 - AO356_18585 0.63 +0.2 4,179,954 + AO356_18585 0.74 +0.0 4,179,954 + AO356_18585 0.74 -0.3 4,179,963 + AO356_18585 0.75 +1.5 4,179,964 - AO356_18585 0.75 +0.1 4,180,100 + AO356_18585 0.89 +0.0 4,180,100 + AO356_18585 0.89 +0.5 4,180,101 - AO356_18585 0.89 -0.4 4,180,101 - AO356_18585 0.89 +0.6
Or see this region's nucleotide sequence