Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07485

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07480 and AO356_07485 are separated by 105 nucleotidesAO356_07485 and AO356_07490 are separated by 255 nucleotides AO356_07480: AO356_07480 - carbamoyl phosphate synthase large subunit, at 1,653,574 to 1,656,795 _07480 AO356_07485: AO356_07485 - carbamoyl phosphate synthase small subunit, at 1,656,901 to 1,658,037 _07485 AO356_07490: AO356_07490 - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,658,293 to 1,659,099 _07490 Position (kb) 1656 1657 1658 1659Strain fitness (log2 ratio) -2 -1 0 1at 1656.248 kb on + strand, within AO356_07480at 1656.603 kb on - strandat 1656.776 kb on - strandat 1656.783 kb on + strandat 1656.830 kb on - strandat 1657.443 kb on - strand, within AO356_07485at 1657.464 kb on - strand, within AO356_07485at 1657.942 kb on - strandat 1658.021 kb on - strandat 1658.055 kb on - strandat 1658.083 kb on - strandat 1658.083 kb on - strandat 1658.133 kb on - strandat 1658.168 kb on - strandat 1658.250 kb on + strandat 1658.250 kb on + strandat 1658.251 kb on - strandat 1658.265 kb on + strandat 1658.265 kb on + strandat 1658.265 kb on + strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strandat 1658.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,656,248 + AO356_07480 0.83 -0.4
1,656,603 - +0.3
1,656,776 - -1.4
1,656,783 + -1.1
1,656,830 - -0.2
1,657,443 - AO356_07485 0.48 -1.1
1,657,464 - AO356_07485 0.50 -2.2
1,657,942 - -0.7
1,658,021 - -0.1
1,658,055 - -0.4
1,658,083 - -1.2
1,658,083 - -1.4
1,658,133 - -1.0
1,658,168 - -0.7
1,658,250 + -1.0
1,658,250 + -1.6
1,658,251 - +0.6
1,658,265 + -0.7
1,658,265 + -1.1
1,658,265 + -1.4
1,658,266 - -0.9
1,658,266 - +0.4
1,658,266 - +0.2
1,658,266 - -0.2
1,658,266 - -0.4
1,658,266 - -0.2
1,658,266 - +0.3
1,658,266 - +0.6
1,658,266 - -0.0
1,658,266 - +0.8
1,658,266 - -0.2

Or see this region's nucleotide sequence