Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07440

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_07420 and AO356_07425 are separated by 140 nucleotidesAO356_07425 and AO356_07430 are separated by 97 nucleotidesAO356_07430 and AO356_07435 are separated by 21 nucleotidesAO356_07435 and AO356_07440 are separated by 4 nucleotidesAO356_07440 and AO356_07445 are separated by 66 nucleotides AO356_07420: AO356_07420 - ribosome maturation protein RimP, at 1,645,177 to 1,645,635 _07420 AO356_07425: AO356_07425 - tRNA-Met, at 1,645,776 to 1,645,852 _07425 AO356_07430: AO356_07430 - tRNA-Leu, at 1,645,950 to 1,646,035 _07430 AO356_07435: AO356_07435 - preprotein translocase subunit SecG, at 1,646,057 to 1,646,440 _07435 AO356_07440: AO356_07440 - triosephosphate isomerase, at 1,646,445 to 1,647,200 _07440 AO356_07445: AO356_07445 - phosphoglucosamine mutase, at 1,647,267 to 1,648,604 _07445 Position (kb) 1646 1647 1648Strain fitness (log2 ratio) -2 -1 0 1at 1645.728 kb on - strandat 1645.730 kb on - strandat 1645.730 kb on - strandat 1645.743 kb on - strandat 1645.872 kb on - strandat 1645.874 kb on - strandat 1645.900 kb on + strandat 1645.900 kb on + strandat 1645.901 kb on - strandat 1645.901 kb on - strandat 1645.901 kb on - strandat 1645.901 kb on - strandat 1645.913 kb on + strandat 1645.947 kb on - strandat 1645.947 kb on - strandat 1645.947 kb on - strandat 1646.039 kb on - strandat 1646.059 kb on - strandat 1646.059 kb on - strandat 1646.059 kb on - strandat 1646.059 kb on - strandat 1646.153 kb on - strand, within AO356_07435at 1646.187 kb on - strand, within AO356_07435at 1647.206 kb on - strandat 1647.206 kb on - strandat 1647.206 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
1,645,728 - +0.3
1,645,730 - +0.1
1,645,730 - +0.3
1,645,743 - +0.3
1,645,872 - -0.8
1,645,874 - +0.9
1,645,900 + -2.7
1,645,900 + -0.9
1,645,901 - +0.5
1,645,901 - +0.5
1,645,901 - -0.4
1,645,901 - -0.6
1,645,913 + -2.1
1,645,947 - -0.3
1,645,947 - +0.1
1,645,947 - +1.3
1,646,039 - -0.4
1,646,059 - -0.2
1,646,059 - -1.1
1,646,059 - -0.2
1,646,059 - +1.4
1,646,153 - AO356_07435 0.25 +0.1
1,646,187 - AO356_07435 0.34 -1.5
1,647,206 - -2.2
1,647,206 - -2.2
1,647,206 - +0.1

Or see this region's nucleotide sequence