Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07145

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07140 and AO356_07145 are separated by 10 nucleotidesAO356_07145 and AO356_07150 are separated by 176 nucleotidesAO356_07150 and AO356_07155 are separated by 49 nucleotides AO356_07140: AO356_07140 - glutamyl-tRNA amidotransferase, at 1,574,037 to 1,575,488 _07140 AO356_07145: AO356_07145 - glutamyl-tRNA amidotransferase, at 1,575,499 to 1,576,944 _07145 AO356_07150: AO356_07150 - hypothetical protein, at 1,577,121 to 1,577,498 _07150 AO356_07155: AO356_07155 - conjugal transfer protein TraR, at 1,577,548 to 1,578,609 _07155 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1at 1577.037 kb on + strandat 1577.037 kb on + strandat 1577.037 kb on + strandat 1577.037 kb on + strandat 1577.038 kb on - strandat 1577.053 kb on + strandat 1577.104 kb on + strandat 1577.104 kb on + strandat 1577.229 kb on + strand, within AO356_07150at 1577.229 kb on + strand, within AO356_07150at 1577.229 kb on + strand, within AO356_07150at 1577.229 kb on + strand, within AO356_07150at 1577.230 kb on - strand, within AO356_07150at 1577.230 kb on - strand, within AO356_07150at 1577.230 kb on - strand, within AO356_07150at 1577.230 kb on - strand, within AO356_07150at 1577.232 kb on + strand, within AO356_07150at 1577.232 kb on + strand, within AO356_07150at 1577.233 kb on - strand, within AO356_07150at 1577.233 kb on - strand, within AO356_07150at 1577.233 kb on - strand, within AO356_07150at 1577.233 kb on - strand, within AO356_07150at 1577.357 kb on + strand, within AO356_07150at 1577.357 kb on + strand, within AO356_07150at 1577.358 kb on - strand, within AO356_07150at 1577.358 kb on - strand, within AO356_07150at 1577.358 kb on - strand, within AO356_07150at 1577.358 kb on - strand, within AO356_07150at 1577.394 kb on + strand, within AO356_07150at 1577.499 kb on + strandat 1577.500 kb on - strandat 1577.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,577,037 + -0.1
1,577,037 + +0.4
1,577,037 + +0.6
1,577,037 + +0.5
1,577,038 - +0.5
1,577,053 + +0.2
1,577,104 + +0.2
1,577,104 + +0.5
1,577,229 + AO356_07150 0.29 +0.4
1,577,229 + AO356_07150 0.29 +0.3
1,577,229 + AO356_07150 0.29 +0.6
1,577,229 + AO356_07150 0.29 +0.1
1,577,230 - AO356_07150 0.29 +0.2
1,577,230 - AO356_07150 0.29 +0.6
1,577,230 - AO356_07150 0.29 -0.3
1,577,230 - AO356_07150 0.29 -0.5
1,577,232 + AO356_07150 0.29 -0.1
1,577,232 + AO356_07150 0.29 +0.3
1,577,233 - AO356_07150 0.30 +0.9
1,577,233 - AO356_07150 0.30 -1.0
1,577,233 - AO356_07150 0.30 -1.0
1,577,233 - AO356_07150 0.30 +0.3
1,577,357 + AO356_07150 0.62 +0.9
1,577,357 + AO356_07150 0.62 +1.6
1,577,358 - AO356_07150 0.63 -2.9
1,577,358 - AO356_07150 0.63 -0.8
1,577,358 - AO356_07150 0.63 +0.5
1,577,358 - AO356_07150 0.63 +0.3
1,577,394 + AO356_07150 0.72 +0.7
1,577,499 + -0.3
1,577,500 - -0.2
1,577,639 + +0.5

Or see this region's nucleotide sequence