Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05155

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05145 and AO356_05150 are separated by 113 nucleotidesAO356_05150 and AO356_05155 are separated by 17 nucleotidesAO356_05155 and AO356_05160 overlap by 14 nucleotides AO356_05145: AO356_05145 - class V aminotransferase, at 1,154,291 to 1,155,478 _05145 AO356_05150: AO356_05150 - keto-deoxy-phosphogluconate aldolase, at 1,155,592 to 1,156,257 _05150 AO356_05155: AO356_05155 - 6-phosphogluconolactonase, at 1,156,275 to 1,156,988 _05155 AO356_05160: AO356_05160 - glucose-6-phosphate dehydrogenase, at 1,156,975 to 1,158,444 _05160 Position (kb) 1156 1157Strain fitness (log2 ratio) -2 -1 0 1 2at 1155.275 kb on + strand, within AO356_05145at 1155.276 kb on - strand, within AO356_05145at 1155.276 kb on - strand, within AO356_05145at 1155.276 kb on - strand, within AO356_05145at 1155.418 kb on + strandat 1155.418 kb on + strandat 1155.418 kb on + strandat 1155.418 kb on + strandat 1155.419 kb on - strandat 1155.419 kb on - strandat 1155.473 kb on - strandat 1155.476 kb on + strandat 1155.476 kb on + strandat 1155.476 kb on + strandat 1155.476 kb on + strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.477 kb on - strandat 1155.509 kb on + strandat 1155.510 kb on - strandat 1155.555 kb on - strandat 1155.562 kb on + strandat 1155.563 kb on - strandat 1155.563 kb on - strandat 1155.563 kb on - strandat 1155.585 kb on - strandat 1156.289 kb on - strandat 1156.981 kb on - strandat 1156.989 kb on - strandat 1157.190 kb on - strand, within AO356_05160at 1157.217 kb on - strand, within AO356_05160at 1157.379 kb on - strand, within AO356_05160at 1157.379 kb on - strand, within AO356_05160at 1157.379 kb on - strand, within AO356_05160at 1157.379 kb on - strand, within AO356_05160at 1157.379 kb on - strand, within AO356_05160at 1157.589 kb on - strand, within AO356_05160at 1157.589 kb on - strand, within AO356_05160at 1157.651 kb on - strand, within AO356_05160at 1157.778 kb on - strand, within AO356_05160at 1157.838 kb on - strand, within AO356_05160at 1157.838 kb on - strand, within AO356_05160at 1157.838 kb on - strand, within AO356_05160at 1157.838 kb on - strand, within AO356_05160at 1157.919 kb on - strand, within AO356_05160at 1157.938 kb on - strand, within AO356_05160at 1157.938 kb on - strand, within AO356_05160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,155,275 + AO356_05145 0.83 +0.6
1,155,276 - AO356_05145 0.83 -0.2
1,155,276 - AO356_05145 0.83 +0.8
1,155,276 - AO356_05145 0.83 +0.4
1,155,418 + +1.3
1,155,418 + -0.1
1,155,418 + +0.2
1,155,418 + +0.7
1,155,419 - -0.4
1,155,419 - -0.2
1,155,473 - -0.4
1,155,476 + +0.9
1,155,476 + +0.9
1,155,476 + +0.1
1,155,476 + +2.1
1,155,477 - +0.7
1,155,477 - +0.5
1,155,477 - +0.1
1,155,477 - +0.5
1,155,477 - +0.5
1,155,477 - +0.2
1,155,477 - +0.1
1,155,477 - +0.2
1,155,509 + +0.0
1,155,510 - -0.1
1,155,555 - +0.5
1,155,562 + +1.1
1,155,563 - -0.9
1,155,563 - +0.1
1,155,563 - -0.2
1,155,585 - -0.1
1,156,289 - -1.2
1,156,981 - +0.2
1,156,989 - +0.1
1,157,190 - AO356_05160 0.15 +0.4
1,157,217 - AO356_05160 0.16 -0.4
1,157,379 - AO356_05160 0.27 -0.9
1,157,379 - AO356_05160 0.27 -1.6
1,157,379 - AO356_05160 0.27 +0.3
1,157,379 - AO356_05160 0.27 -0.4
1,157,379 - AO356_05160 0.27 +0.1
1,157,589 - AO356_05160 0.42 -1.2
1,157,589 - AO356_05160 0.42 -0.1
1,157,651 - AO356_05160 0.46 +0.3
1,157,778 - AO356_05160 0.55 -0.2
1,157,838 - AO356_05160 0.59 -0.3
1,157,838 - AO356_05160 0.59 -0.2
1,157,838 - AO356_05160 0.59 +0.0
1,157,838 - AO356_05160 0.59 -0.7
1,157,919 - AO356_05160 0.64 -1.8
1,157,938 - AO356_05160 0.66 -0.4
1,157,938 - AO356_05160 0.66 -0.6

Or see this region's nucleotide sequence