Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04985

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04980 and AO356_04985 are separated by 238 nucleotidesAO356_04985 and AO356_04990 are separated by 106 nucleotides AO356_04980: AO356_04980 - calcium channel protein, at 1,121,546 to 1,122,388 _04980 AO356_04985: AO356_04985 - ATPase, at 1,122,627 to 1,123,502 _04985 AO356_04990: AO356_04990 - 3-beta hydroxysteroid dehydrogenase, at 1,123,609 to 1,124,601 _04990 Position (kb) 1122 1123 1124Strain fitness (log2 ratio) -2 -1 0 1at 1121.652 kb on + strand, within AO356_04980at 1121.652 kb on + strand, within AO356_04980at 1121.652 kb on + strand, within AO356_04980at 1121.652 kb on + strand, within AO356_04980at 1121.653 kb on - strand, within AO356_04980at 1121.653 kb on - strand, within AO356_04980at 1121.653 kb on - strand, within AO356_04980at 1121.775 kb on + strand, within AO356_04980at 1121.775 kb on + strand, within AO356_04980at 1121.775 kb on + strand, within AO356_04980at 1121.775 kb on + strand, within AO356_04980at 1121.776 kb on - strand, within AO356_04980at 1121.776 kb on - strand, within AO356_04980at 1121.776 kb on - strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.808 kb on + strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.809 kb on - strand, within AO356_04980at 1121.941 kb on - strand, within AO356_04980at 1121.941 kb on - strand, within AO356_04980at 1121.983 kb on - strand, within AO356_04980at 1122.031 kb on - strand, within AO356_04980at 1122.192 kb on + strand, within AO356_04980at 1122.192 kb on + strand, within AO356_04980at 1122.192 kb on + strand, within AO356_04980at 1122.192 kb on + strand, within AO356_04980at 1122.193 kb on - strand, within AO356_04980at 1122.193 kb on - strand, within AO356_04980at 1122.262 kb on - strand, within AO356_04980at 1122.264 kb on + strand, within AO356_04980at 1122.264 kb on + strand, within AO356_04980at 1122.264 kb on + strand, within AO356_04980at 1122.265 kb on - strand, within AO356_04980at 1122.426 kb on + strandat 1122.427 kb on - strandat 1122.427 kb on - strandat 1122.427 kb on - strandat 1122.427 kb on - strandat 1122.451 kb on + strandat 1122.451 kb on + strandat 1122.451 kb on + strandat 1122.452 kb on - strandat 1122.452 kb on - strandat 1122.491 kb on - strandat 1122.496 kb on + strandat 1122.496 kb on + strandat 1122.497 kb on - strandat 1122.628 kb on + strandat 1122.628 kb on + strandat 1122.628 kb on + strandat 1122.629 kb on - strandat 1122.629 kb on - strandat 1122.629 kb on - strandat 1122.693 kb on - strandat 1123.044 kb on + strand, within AO356_04985at 1123.044 kb on + strand, within AO356_04985at 1123.044 kb on + strand, within AO356_04985at 1123.044 kb on + strand, within AO356_04985at 1123.045 kb on - strand, within AO356_04985at 1123.051 kb on + strand, within AO356_04985at 1123.051 kb on + strand, within AO356_04985at 1123.051 kb on + strand, within AO356_04985at 1123.051 kb on + strand, within AO356_04985at 1123.051 kb on + strand, within AO356_04985at 1123.052 kb on - strand, within AO356_04985at 1123.052 kb on - strand, within AO356_04985at 1123.052 kb on - strand, within AO356_04985at 1123.461 kb on + strandat 1123.461 kb on + strandat 1123.461 kb on + strandat 1123.462 kb on - strandat 1123.462 kb on - strandat 1123.462 kb on - strandat 1123.545 kb on + strandat 1123.545 kb on + strandat 1123.545 kb on + strandat 1123.545 kb on + strandat 1123.546 kb on - strandat 1123.546 kb on - strandat 1123.546 kb on - strandat 1123.546 kb on - strandat 1123.546 kb on - strandat 1123.547 kb on + strandat 1123.547 kb on + strandat 1123.547 kb on + strandat 1123.547 kb on + strandat 1123.683 kb on - strandat 1123.691 kb on + strandat 1123.691 kb on + strandat 1123.692 kb on - strandat 1123.692 kb on - strandat 1123.692 kb on - strandat 1123.710 kb on + strand, within AO356_04990at 1123.820 kb on + strand, within AO356_04990at 1123.821 kb on - strand, within AO356_04990at 1123.821 kb on - strand, within AO356_04990at 1123.832 kb on + strand, within AO356_04990at 1123.833 kb on - strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.880 kb on + strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.881 kb on - strand, within AO356_04990at 1123.928 kb on + strand, within AO356_04990at 1123.929 kb on - strand, within AO356_04990at 1124.174 kb on + strand, within AO356_04990at 1124.174 kb on + strand, within AO356_04990at 1124.174 kb on + strand, within AO356_04990at 1124.174 kb on + strand, within AO356_04990at 1124.175 kb on - strand, within AO356_04990at 1124.175 kb on - strand, within AO356_04990at 1124.175 kb on - strand, within AO356_04990at 1124.175 kb on - strand, within AO356_04990at 1124.255 kb on + strand, within AO356_04990at 1124.256 kb on - strand, within AO356_04990at 1124.360 kb on + strand, within AO356_04990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,121,652 + AO356_04980 0.13 +0.2
1,121,652 + AO356_04980 0.13 +0.9
1,121,652 + AO356_04980 0.13 +0.4
1,121,652 + AO356_04980 0.13 +0.2
1,121,653 - AO356_04980 0.13 +0.2
1,121,653 - AO356_04980 0.13 -0.9
1,121,653 - AO356_04980 0.13 +0.0
1,121,775 + AO356_04980 0.27 +0.1
1,121,775 + AO356_04980 0.27 +0.0
1,121,775 + AO356_04980 0.27 -0.6
1,121,775 + AO356_04980 0.27 +0.6
1,121,776 - AO356_04980 0.27 +0.3
1,121,776 - AO356_04980 0.27 +0.6
1,121,776 - AO356_04980 0.27 +0.7
1,121,808 + AO356_04980 0.31 +1.0
1,121,808 + AO356_04980 0.31 +0.4
1,121,808 + AO356_04980 0.31 +1.0
1,121,808 + AO356_04980 0.31 +0.8
1,121,808 + AO356_04980 0.31 -0.4
1,121,808 + AO356_04980 0.31 -0.1
1,121,808 + AO356_04980 0.31 +0.1
1,121,808 + AO356_04980 0.31 +0.7
1,121,808 + AO356_04980 0.31 -1.3
1,121,808 + AO356_04980 0.31 +0.2
1,121,808 + AO356_04980 0.31 -1.6
1,121,808 + AO356_04980 0.31 -0.0
1,121,808 + AO356_04980 0.31 +0.3
1,121,808 + AO356_04980 0.31 +0.7
1,121,809 - AO356_04980 0.31 +0.1
1,121,809 - AO356_04980 0.31 +0.6
1,121,809 - AO356_04980 0.31 +1.3
1,121,809 - AO356_04980 0.31 -0.2
1,121,809 - AO356_04980 0.31 +0.7
1,121,809 - AO356_04980 0.31 +0.4
1,121,809 - AO356_04980 0.31 +0.8
1,121,809 - AO356_04980 0.31 +0.4
1,121,809 - AO356_04980 0.31 +0.2
1,121,809 - AO356_04980 0.31 +0.2
1,121,809 - AO356_04980 0.31 +0.5
1,121,809 - AO356_04980 0.31 -0.0
1,121,941 - AO356_04980 0.47 +0.9
1,121,941 - AO356_04980 0.47 -0.3
1,121,983 - AO356_04980 0.52 +0.1
1,122,031 - AO356_04980 0.58 +0.6
1,122,192 + AO356_04980 0.77 +0.4
1,122,192 + AO356_04980 0.77 +0.3
1,122,192 + AO356_04980 0.77 +0.1
1,122,192 + AO356_04980 0.77 -0.1
1,122,193 - AO356_04980 0.77 +0.1
1,122,193 - AO356_04980 0.77 +0.5
1,122,262 - AO356_04980 0.85 +0.3
1,122,264 + AO356_04980 0.85 +0.9
1,122,264 + AO356_04980 0.85 +0.2
1,122,264 + AO356_04980 0.85 -0.7
1,122,265 - AO356_04980 0.85 -1.0
1,122,426 + +0.8
1,122,427 - +0.7
1,122,427 - +0.1
1,122,427 - +0.4
1,122,427 - +0.2
1,122,451 + +0.2
1,122,451 + -0.7
1,122,451 + -0.3
1,122,452 - +0.3
1,122,452 - +0.8
1,122,491 - -0.7
1,122,496 + +0.4
1,122,496 + -0.7
1,122,497 - +1.1
1,122,628 + +1.0
1,122,628 + +1.2
1,122,628 + +0.3
1,122,629 - -0.4
1,122,629 - +0.2
1,122,629 - +0.5
1,122,693 - -0.6
1,123,044 + AO356_04985 0.48 -2.2
1,123,044 + AO356_04985 0.48 -0.7
1,123,044 + AO356_04985 0.48 -0.0
1,123,044 + AO356_04985 0.48 +0.3
1,123,045 - AO356_04985 0.48 -0.7
1,123,051 + AO356_04985 0.48 -0.0
1,123,051 + AO356_04985 0.48 +0.3
1,123,051 + AO356_04985 0.48 +1.7
1,123,051 + AO356_04985 0.48 -0.3
1,123,051 + AO356_04985 0.48 -0.5
1,123,052 - AO356_04985 0.49 -0.0
1,123,052 - AO356_04985 0.49 -0.9
1,123,052 - AO356_04985 0.49 -0.3
1,123,461 + +0.2
1,123,461 + -0.0
1,123,461 + -0.2
1,123,462 - +1.3
1,123,462 - -0.7
1,123,462 - +0.5
1,123,545 + -0.9
1,123,545 + -0.8
1,123,545 + +0.6
1,123,545 + -0.8
1,123,546 - +0.2
1,123,546 - -0.0
1,123,546 - +0.0
1,123,546 - +0.4
1,123,546 - +0.6
1,123,547 + -0.0
1,123,547 + -0.0
1,123,547 + +0.1
1,123,547 + +1.2
1,123,683 - -1.0
1,123,691 + -0.3
1,123,691 + +0.2
1,123,692 - +0.9
1,123,692 - -1.2
1,123,692 - +0.7
1,123,710 + AO356_04990 0.10 -0.2
1,123,820 + AO356_04990 0.21 +0.2
1,123,821 - AO356_04990 0.21 -0.0
1,123,821 - AO356_04990 0.21 -0.4
1,123,832 + AO356_04990 0.22 -0.1
1,123,833 - AO356_04990 0.23 +0.4
1,123,880 + AO356_04990 0.27 +1.1
1,123,880 + AO356_04990 0.27 +0.2
1,123,880 + AO356_04990 0.27 -0.6
1,123,880 + AO356_04990 0.27 -0.1
1,123,880 + AO356_04990 0.27 -0.2
1,123,880 + AO356_04990 0.27 -0.2
1,123,880 + AO356_04990 0.27 +0.8
1,123,880 + AO356_04990 0.27 -0.3
1,123,881 - AO356_04990 0.27 +0.6
1,123,881 - AO356_04990 0.27 +0.1
1,123,881 - AO356_04990 0.27 +0.5
1,123,881 - AO356_04990 0.27 +0.8
1,123,881 - AO356_04990 0.27 -0.9
1,123,881 - AO356_04990 0.27 -0.1
1,123,881 - AO356_04990 0.27 -0.2
1,123,881 - AO356_04990 0.27 +0.8
1,123,881 - AO356_04990 0.27 -0.2
1,123,928 + AO356_04990 0.32 +0.2
1,123,929 - AO356_04990 0.32 -0.2
1,124,174 + AO356_04990 0.57 +0.3
1,124,174 + AO356_04990 0.57 -0.0
1,124,174 + AO356_04990 0.57 +0.1
1,124,174 + AO356_04990 0.57 +0.8
1,124,175 - AO356_04990 0.57 +0.2
1,124,175 - AO356_04990 0.57 -0.3
1,124,175 - AO356_04990 0.57 -0.3
1,124,175 - AO356_04990 0.57 +0.2
1,124,255 + AO356_04990 0.65 +0.5
1,124,256 - AO356_04990 0.65 -1.0
1,124,360 + AO356_04990 0.76 -0.1

Or see this region's nucleotide sequence