Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5031.1 and Xcc-8004.5033.1 are separated by 32 nucleotides Xcc-8004.5033.1 and Xcc-8004.5034.1 overlap by 11 nucleotides Xcc-8004.5034.1 and Xcc-8004.5035.1 are separated by 9 nucleotides
Xcc-8004.5031.1: Xcc-8004.5031.1 - hypothetical protein, at 4,770,011 to 4,773,010
Xcc-8004.5031.1
Xcc-8004.5033.1: Xcc-8004.5033.1 - hypothetical protein, at 4,773,043 to 4,773,885
Xcc-8004.5033.1
Xcc-8004.5034.1: Xcc-8004.5034.1 - Pass1-related protein, at 4,773,875 to 4,774,888
Xcc-8004.5034.1
Xcc-8004.5035.1: Xcc-8004.5035.1 - Tryptophan halogenase, at 4,774,898 to 4,776,460
Xcc-8004.5035.1
Position (kb) 4773
4774
4775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.955 kb on - strand at 4772.955 kb on - strand at 4772.955 kb on - strand at 4772.978 kb on + strand at 4772.978 kb on + strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.257 kb on - strand, within Xcc-8004.5033.1 at 4773.257 kb on - strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.730 kb on + strand, within Xcc-8004.5033.1 at 4773.730 kb on + strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.753 kb on - strand, within Xcc-8004.5033.1 at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.816 kb on + strand at 4773.816 kb on + strand at 4773.817 kb on - strand at 4773.817 kb on - strand at 4774.037 kb on + strand, within Xcc-8004.5034.1 at 4774.037 kb on + strand, within Xcc-8004.5034.1 at 4774.038 kb on - strand, within Xcc-8004.5034.1 at 4774.112 kb on + strand, within Xcc-8004.5034.1 at 4774.112 kb on + strand, within Xcc-8004.5034.1 at 4774.113 kb on - strand, within Xcc-8004.5034.1 at 4774.113 kb on - strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.430 kb on + strand, within Xcc-8004.5034.1 at 4774.430 kb on + strand, within Xcc-8004.5034.1 at 4774.431 kb on - strand, within Xcc-8004.5034.1 at 4774.483 kb on + strand, within Xcc-8004.5034.1 at 4774.661 kb on + strand, within Xcc-8004.5034.1 at 4774.661 kb on + strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.303 kb on + strand, within Xcc-8004.5035.1 at 4775.304 kb on - strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.375 kb on + strand, within Xcc-8004.5035.1 at 4775.375 kb on + strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.396 kb on + strand, within Xcc-8004.5035.1 at 4775.396 kb on + strand, within Xcc-8004.5035.1 at 4775.753 kb on + strand, within Xcc-8004.5035.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 4,772,954 + +2.0 4,772,954 + +0.2 4,772,954 + +0.9 4,772,954 + +0.3 4,772,954 + +1.1 4,772,954 + +0.8 4,772,955 - +1.0 4,772,955 - +0.9 4,772,955 - -0.2 4,772,978 + +0.3 4,772,978 + -0.0 4,772,979 - +2.0 4,772,979 - -0.6 4,772,979 - +0.3 4,772,979 - -0.0 4,772,979 - -0.4 4,772,979 - +1.5 4,772,996 + -0.4 4,772,996 + +0.6 4,772,996 + -1.2 4,772,996 + -0.3 4,772,997 - -0.0 4,772,997 - -1.0 4,772,997 - +0.4 4,772,997 - +1.1 4,773,077 + +0.7 4,773,077 + -1.1 4,773,077 + -0.0 4,773,077 + +0.8 4,773,077 + +0.3 4,773,077 + +1.0 4,773,077 + +0.9 4,773,077 + +0.2 4,773,077 + +1.6 4,773,077 + +1.8 4,773,077 + +0.2 4,773,077 + +0.7 4,773,077 + +0.7 4,773,077 + +0.4 4,773,077 + -0.8 4,773,077 + +0.4 4,773,077 + +0.4 4,773,078 - +0.0 4,773,078 - +0.7 4,773,078 - +0.3 4,773,078 - -0.4 4,773,078 - +1.0 4,773,078 - +1.2 4,773,078 - +0.6 4,773,078 - +0.6 4,773,078 - +1.1 4,773,078 - -0.3 4,773,078 - +0.7 4,773,078 - +0.6 4,773,078 - -0.5 4,773,078 - +1.2 4,773,078 - +0.7 4,773,078 - +0.8 4,773,078 - +0.9 4,773,257 - Xcc-8004.5033.1 0.25 +0.2 4,773,257 - Xcc-8004.5033.1 0.25 -0.1 4,773,430 + Xcc-8004.5033.1 0.46 +1.1 4,773,430 + Xcc-8004.5033.1 0.46 +0.8 4,773,430 + Xcc-8004.5033.1 0.46 -0.2 4,773,430 + Xcc-8004.5033.1 0.46 +0.8 4,773,430 + Xcc-8004.5033.1 0.46 +0.3 4,773,430 + Xcc-8004.5033.1 0.46 -0.5 4,773,430 + Xcc-8004.5033.1 0.46 +0.3 4,773,430 + Xcc-8004.5033.1 0.46 -0.3 4,773,431 - Xcc-8004.5033.1 0.46 -0.2 4,773,431 - Xcc-8004.5033.1 0.46 -0.5 4,773,431 - Xcc-8004.5033.1 0.46 -0.3 4,773,431 - Xcc-8004.5033.1 0.46 -0.3 4,773,730 + Xcc-8004.5033.1 0.81 -0.2 4,773,730 + Xcc-8004.5033.1 0.81 +1.1 4,773,731 - Xcc-8004.5033.1 0.82 +0.1 4,773,731 - Xcc-8004.5033.1 0.82 +1.4 4,773,731 - Xcc-8004.5033.1 0.82 -0.1 4,773,731 - Xcc-8004.5033.1 0.82 +1.3 4,773,753 - Xcc-8004.5033.1 0.84 -0.4 4,773,814 + -0.0 4,773,814 + -0.6 4,773,814 + -0.4 4,773,814 + +0.1 4,773,814 + +0.7 4,773,814 + -0.3 4,773,814 + +0.1 4,773,814 + +0.0 4,773,814 + -0.4 4,773,814 + +0.2 4,773,814 + +0.4 4,773,814 + -0.5 4,773,814 + +0.4 4,773,815 - +0.1 4,773,815 - +1.4 4,773,815 - -1.3 4,773,815 - +0.7 4,773,815 - -0.2 4,773,815 - +0.9 4,773,815 - -0.0 4,773,815 - +0.2 4,773,815 - +1.0 4,773,815 - +1.1 4,773,815 - +0.8 4,773,815 - +1.3 4,773,816 + -0.5 4,773,816 + +0.5 4,773,817 - -0.1 4,773,817 - +0.4 4,774,037 + Xcc-8004.5034.1 0.16 +0.3 4,774,037 + Xcc-8004.5034.1 0.16 +0.7 4,774,038 - Xcc-8004.5034.1 0.16 -0.3 4,774,112 + Xcc-8004.5034.1 0.23 +0.7 4,774,112 + Xcc-8004.5034.1 0.23 -1.0 4,774,113 - Xcc-8004.5034.1 0.23 -0.3 4,774,113 - Xcc-8004.5034.1 0.23 +0.5 4,774,220 + Xcc-8004.5034.1 0.34 +0.9 4,774,220 + Xcc-8004.5034.1 0.34 +1.2 4,774,220 + Xcc-8004.5034.1 0.34 +0.5 4,774,220 + Xcc-8004.5034.1 0.34 +1.6 4,774,220 + Xcc-8004.5034.1 0.34 -0.6 4,774,221 - Xcc-8004.5034.1 0.34 -0.3 4,774,221 - Xcc-8004.5034.1 0.34 +0.9 4,774,221 - Xcc-8004.5034.1 0.34 +0.6 4,774,221 - Xcc-8004.5034.1 0.34 -0.0 4,774,221 - Xcc-8004.5034.1 0.34 +0.2 4,774,221 - Xcc-8004.5034.1 0.34 +0.1 4,774,221 - Xcc-8004.5034.1 0.34 +0.8 4,774,247 + Xcc-8004.5034.1 0.37 -0.3 4,774,247 + Xcc-8004.5034.1 0.37 +0.6 4,774,247 + Xcc-8004.5034.1 0.37 +0.7 4,774,247 + Xcc-8004.5034.1 0.37 +0.4 4,774,247 + Xcc-8004.5034.1 0.37 +0.2 4,774,247 + Xcc-8004.5034.1 0.37 -1.2 4,774,247 + Xcc-8004.5034.1 0.37 +2.0 4,774,247 + Xcc-8004.5034.1 0.37 -0.3 4,774,247 + Xcc-8004.5034.1 0.37 +0.7 4,774,248 - Xcc-8004.5034.1 0.37 -0.6 4,774,248 - Xcc-8004.5034.1 0.37 -0.4 4,774,248 - Xcc-8004.5034.1 0.37 +0.6 4,774,248 - Xcc-8004.5034.1 0.37 -0.7 4,774,248 - Xcc-8004.5034.1 0.37 +0.2 4,774,248 - Xcc-8004.5034.1 0.37 +0.3 4,774,248 - Xcc-8004.5034.1 0.37 +0.6 4,774,248 - Xcc-8004.5034.1 0.37 +0.7 4,774,248 - Xcc-8004.5034.1 0.37 -0.1 4,774,430 + Xcc-8004.5034.1 0.55 +0.8 4,774,430 + Xcc-8004.5034.1 0.55 +0.1 4,774,431 - Xcc-8004.5034.1 0.55 -0.2 4,774,483 + Xcc-8004.5034.1 0.60 +0.7 4,774,661 + Xcc-8004.5034.1 0.78 +1.1 4,774,661 + Xcc-8004.5034.1 0.78 -0.5 4,774,662 - Xcc-8004.5034.1 0.78 +0.4 4,774,662 - Xcc-8004.5034.1 0.78 +0.6 4,774,662 - Xcc-8004.5034.1 0.78 +0.2 4,774,662 - Xcc-8004.5034.1 0.78 +0.3 4,774,662 - Xcc-8004.5034.1 0.78 +0.5 4,774,760 + Xcc-8004.5034.1 0.87 +0.2 4,774,760 + Xcc-8004.5034.1 0.87 +1.4 4,774,760 + Xcc-8004.5034.1 0.87 -0.1 4,774,761 - Xcc-8004.5034.1 0.87 -1.3 4,774,761 - Xcc-8004.5034.1 0.87 +0.1 4,774,761 - Xcc-8004.5034.1 0.87 -1.2 4,774,761 - Xcc-8004.5034.1 0.87 +1.1 4,774,761 - Xcc-8004.5034.1 0.87 +1.2 4,774,761 - Xcc-8004.5034.1 0.87 +1.2 4,774,761 - Xcc-8004.5034.1 0.87 -0.0 4,774,764 + Xcc-8004.5034.1 0.88 +0.5 4,774,764 + Xcc-8004.5034.1 0.88 -0.0 4,774,764 + Xcc-8004.5034.1 0.88 -0.2 4,774,764 + Xcc-8004.5034.1 0.88 +0.8 4,774,764 + Xcc-8004.5034.1 0.88 +0.1 4,774,765 - Xcc-8004.5034.1 0.88 +1.5 4,774,765 - Xcc-8004.5034.1 0.88 -0.8 4,774,765 - Xcc-8004.5034.1 0.88 +0.0 4,774,765 - Xcc-8004.5034.1 0.88 +0.5 4,774,765 - Xcc-8004.5034.1 0.88 +0.3 4,774,765 - Xcc-8004.5034.1 0.88 -0.1 4,774,765 - Xcc-8004.5034.1 0.88 -1.8 4,774,765 - Xcc-8004.5034.1 0.88 +1.1 4,774,765 - Xcc-8004.5034.1 0.88 -0.0 4,775,198 + Xcc-8004.5035.1 0.19 +1.2 4,775,198 + Xcc-8004.5035.1 0.19 +0.4 4,775,198 + Xcc-8004.5035.1 0.19 +0.6 4,775,198 + Xcc-8004.5035.1 0.19 +0.8 4,775,198 + Xcc-8004.5035.1 0.19 +1.0 4,775,198 + Xcc-8004.5035.1 0.19 +0.2 4,775,198 + Xcc-8004.5035.1 0.19 +2.0 4,775,198 + Xcc-8004.5035.1 0.19 -0.5 4,775,198 + Xcc-8004.5035.1 0.19 +0.7 4,775,199 - Xcc-8004.5035.1 0.19 +0.2 4,775,199 - Xcc-8004.5035.1 0.19 +1.1 4,775,199 - Xcc-8004.5035.1 0.19 +0.1 4,775,199 - Xcc-8004.5035.1 0.19 +0.2 4,775,199 - Xcc-8004.5035.1 0.19 +0.7 4,775,303 + Xcc-8004.5035.1 0.26 +0.7 4,775,304 - Xcc-8004.5035.1 0.26 +0.2 4,775,369 + Xcc-8004.5035.1 0.30 +2.6 4,775,369 + Xcc-8004.5035.1 0.30 +1.4 4,775,369 + Xcc-8004.5035.1 0.30 +1.3 4,775,369 + Xcc-8004.5035.1 0.30 +0.7 4,775,369 + Xcc-8004.5035.1 0.30 +0.0 4,775,369 + Xcc-8004.5035.1 0.30 -0.6 4,775,370 - Xcc-8004.5035.1 0.30 +1.1 4,775,370 - Xcc-8004.5035.1 0.30 +1.4 4,775,370 - Xcc-8004.5035.1 0.30 -0.1 4,775,370 - Xcc-8004.5035.1 0.30 +1.1 4,775,370 - Xcc-8004.5035.1 0.30 -0.0 4,775,370 - Xcc-8004.5035.1 0.30 -0.0 4,775,375 + Xcc-8004.5035.1 0.31 +0.1 4,775,375 + Xcc-8004.5035.1 0.31 +0.2 4,775,376 - Xcc-8004.5035.1 0.31 +1.2 4,775,376 - Xcc-8004.5035.1 0.31 +0.2 4,775,376 - Xcc-8004.5035.1 0.31 +0.2 4,775,396 + Xcc-8004.5035.1 0.32 +1.4 4,775,396 + Xcc-8004.5035.1 0.32 +0.5 4,775,753 + Xcc-8004.5035.1 0.55 +1.3
Or see this region's nucleotide sequence