Experiment: Clovis xylem sap
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5029.1 and Xcc-8004.5030.1 are separated by 534 nucleotides Xcc-8004.5030.1 and Xcc-8004.5031.1 are separated by 251 nucleotides
Xcc-8004.5029.1: Xcc-8004.5029.1 - Dipeptidyl peptidase IV, at 4,766,307 to 4,768,535
Xcc-8004.5029.1
Xcc-8004.5030.1: Xcc-8004.5030.1 - Glutathione S-transferase (EC 2.5.1.18), at 4,769,070 to 4,769,759
Xcc-8004.5030.1
Xcc-8004.5031.1: Xcc-8004.5031.1 - hypothetical protein, at 4,770,011 to 4,773,010
Xcc-8004.5031.1
Position (kb) 4769
4770 Strain fitness (log2 ratio) -1
0
1
2 at 4768.135 kb on + strand, within Xcc-8004.5029.1 at 4768.136 kb on - strand, within Xcc-8004.5029.1 at 4768.136 kb on - strand, within Xcc-8004.5029.1 at 4768.136 kb on - strand, within Xcc-8004.5029.1 at 4768.141 kb on + strand, within Xcc-8004.5029.1 at 4768.142 kb on - strand, within Xcc-8004.5029.1 at 4768.142 kb on - strand, within Xcc-8004.5029.1 at 4768.142 kb on - strand, within Xcc-8004.5029.1 at 4768.331 kb on - strand at 4768.331 kb on - strand at 4768.331 kb on - strand at 4768.352 kb on + strand at 4768.582 kb on + strand at 4768.583 kb on - strand at 4768.583 kb on - strand at 4768.583 kb on - strand at 4768.583 kb on - strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.629 kb on + strand at 4768.630 kb on - strand at 4768.630 kb on - strand at 4768.630 kb on - strand at 4768.804 kb on - strand at 4768.804 kb on - strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.875 kb on + strand at 4768.876 kb on - strand at 4768.876 kb on - strand at 4768.876 kb on - strand at 4768.876 kb on - strand at 4768.876 kb on - strand at 4768.944 kb on + strand at 4768.944 kb on + strand at 4768.944 kb on + strand at 4768.944 kb on + strand at 4768.945 kb on - strand at 4768.945 kb on - strand at 4768.945 kb on - strand at 4768.970 kb on + strand at 4768.970 kb on + strand at 4768.970 kb on + strand at 4768.971 kb on - strand at 4768.971 kb on - strand at 4769.059 kb on - strand at 4769.152 kb on + strand, within Xcc-8004.5030.1 at 4769.153 kb on - strand, within Xcc-8004.5030.1 at 4769.221 kb on + strand, within Xcc-8004.5030.1 at 4769.221 kb on + strand, within Xcc-8004.5030.1 at 4769.221 kb on + strand, within Xcc-8004.5030.1 at 4769.221 kb on + strand, within Xcc-8004.5030.1 at 4769.221 kb on + strand, within Xcc-8004.5030.1 at 4769.222 kb on - strand, within Xcc-8004.5030.1 at 4769.242 kb on + strand, within Xcc-8004.5030.1 at 4769.242 kb on + strand, within Xcc-8004.5030.1 at 4769.243 kb on - strand, within Xcc-8004.5030.1 at 4769.243 kb on - strand, within Xcc-8004.5030.1 at 4769.243 kb on - strand, within Xcc-8004.5030.1 at 4769.243 kb on - strand, within Xcc-8004.5030.1 at 4769.243 kb on - strand, within Xcc-8004.5030.1 at 4769.261 kb on - strand, within Xcc-8004.5030.1 at 4769.261 kb on - strand, within Xcc-8004.5030.1 at 4769.284 kb on + strand, within Xcc-8004.5030.1 at 4769.284 kb on + strand, within Xcc-8004.5030.1 at 4769.284 kb on + strand, within Xcc-8004.5030.1 at 4769.284 kb on + strand, within Xcc-8004.5030.1 at 4769.284 kb on + strand, within Xcc-8004.5030.1 at 4769.285 kb on - strand, within Xcc-8004.5030.1 at 4769.362 kb on + strand, within Xcc-8004.5030.1 at 4769.362 kb on + strand, within Xcc-8004.5030.1 at 4769.362 kb on + strand, within Xcc-8004.5030.1 at 4769.363 kb on - strand, within Xcc-8004.5030.1 at 4769.363 kb on - strand, within Xcc-8004.5030.1 at 4769.378 kb on - strand, within Xcc-8004.5030.1 at 4769.398 kb on + strand, within Xcc-8004.5030.1 at 4769.398 kb on + strand, within Xcc-8004.5030.1 at 4769.398 kb on + strand, within Xcc-8004.5030.1 at 4769.398 kb on + strand, within Xcc-8004.5030.1 at 4769.398 kb on + strand, within Xcc-8004.5030.1 at 4769.399 kb on - strand, within Xcc-8004.5030.1 at 4769.399 kb on - strand, within Xcc-8004.5030.1 at 4769.399 kb on - strand, within Xcc-8004.5030.1 at 4769.399 kb on - strand, within Xcc-8004.5030.1 at 4769.399 kb on - strand, within Xcc-8004.5030.1 at 4769.527 kb on + strand, within Xcc-8004.5030.1 at 4769.527 kb on + strand, within Xcc-8004.5030.1 at 4769.527 kb on + strand, within Xcc-8004.5030.1 at 4769.527 kb on + strand, within Xcc-8004.5030.1 at 4769.528 kb on - strand, within Xcc-8004.5030.1 at 4769.528 kb on - strand, within Xcc-8004.5030.1 at 4769.528 kb on - strand, within Xcc-8004.5030.1 at 4769.528 kb on - strand, within Xcc-8004.5030.1 at 4769.528 kb on - strand, within Xcc-8004.5030.1 at 4769.664 kb on - strand, within Xcc-8004.5030.1 at 4769.683 kb on + strand, within Xcc-8004.5030.1 at 4769.684 kb on - strand, within Xcc-8004.5030.1 at 4769.684 kb on - strand, within Xcc-8004.5030.1 at 4769.684 kb on - strand, within Xcc-8004.5030.1 at 4769.684 kb on - strand, within Xcc-8004.5030.1 at 4769.684 kb on - strand, within Xcc-8004.5030.1 at 4769.743 kb on + strand at 4769.743 kb on + strand at 4769.743 kb on + strand at 4769.743 kb on + strand at 4769.744 kb on - strand at 4769.744 kb on - strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.746 kb on + strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.747 kb on - strand at 4769.819 kb on - strand at 4769.830 kb on + strand at 4769.831 kb on - strand at 4769.921 kb on + strand at 4769.922 kb on - strand at 4769.922 kb on - strand at 4769.952 kb on + strand at 4769.952 kb on + strand at 4769.953 kb on - strand at 4769.953 kb on - strand at 4769.953 kb on - strand at 4769.953 kb on - strand at 4769.956 kb on + strand at 4769.956 kb on + strand at 4769.956 kb on + strand at 4769.956 kb on + strand at 4769.956 kb on + strand at 4769.957 kb on - strand at 4770.164 kb on - strand at 4770.743 kb on + strand, within Xcc-8004.5031.1 at 4770.743 kb on + strand, within Xcc-8004.5031.1 at 4770.743 kb on + strand, within Xcc-8004.5031.1 at 4770.744 kb on - strand, within Xcc-8004.5031.1
Per-strain Table
Position Strand Gene LocusTag Fraction Clovis xylem sap remove 4,768,135 + Xcc-8004.5029.1 0.82 +0.6 4,768,136 - Xcc-8004.5029.1 0.82 +1.2 4,768,136 - Xcc-8004.5029.1 0.82 -0.6 4,768,136 - Xcc-8004.5029.1 0.82 -0.5 4,768,141 + Xcc-8004.5029.1 0.82 -1.3 4,768,142 - Xcc-8004.5029.1 0.82 +0.6 4,768,142 - Xcc-8004.5029.1 0.82 +1.0 4,768,142 - Xcc-8004.5029.1 0.82 -0.3 4,768,331 - -0.1 4,768,331 - -0.4 4,768,331 - +0.3 4,768,352 + -0.5 4,768,582 + +0.4 4,768,583 - +0.0 4,768,583 - -0.7 4,768,583 - -0.0 4,768,583 - +0.3 4,768,629 + +0.4 4,768,629 + +0.5 4,768,629 + -0.0 4,768,629 + -0.2 4,768,629 + +1.1 4,768,629 + +1.2 4,768,629 + +0.0 4,768,629 + -0.2 4,768,630 - +0.7 4,768,630 - +0.6 4,768,630 - +0.2 4,768,804 - +0.5 4,768,804 - +2.0 4,768,875 + +1.0 4,768,875 + -0.0 4,768,875 + -0.8 4,768,875 + +1.3 4,768,875 + +0.1 4,768,875 + +0.8 4,768,875 + +0.3 4,768,876 - +1.2 4,768,876 - +1.0 4,768,876 - +1.2 4,768,876 - -1.5 4,768,876 - +0.9 4,768,944 + +0.0 4,768,944 + -1.2 4,768,944 + -0.2 4,768,944 + +0.5 4,768,945 - -1.7 4,768,945 - +0.2 4,768,945 - -0.8 4,768,970 + -0.9 4,768,970 + +0.5 4,768,970 + +0.4 4,768,971 - -0.4 4,768,971 - -0.2 4,769,059 - +1.4 4,769,152 + Xcc-8004.5030.1 0.12 +1.7 4,769,153 - Xcc-8004.5030.1 0.12 +0.8 4,769,221 + Xcc-8004.5030.1 0.22 +0.7 4,769,221 + Xcc-8004.5030.1 0.22 -0.0 4,769,221 + Xcc-8004.5030.1 0.22 -0.0 4,769,221 + Xcc-8004.5030.1 0.22 +1.5 4,769,221 + Xcc-8004.5030.1 0.22 +0.8 4,769,222 - Xcc-8004.5030.1 0.22 +1.0 4,769,242 + Xcc-8004.5030.1 0.25 -0.0 4,769,242 + Xcc-8004.5030.1 0.25 +0.9 4,769,243 - Xcc-8004.5030.1 0.25 -0.1 4,769,243 - Xcc-8004.5030.1 0.25 +0.8 4,769,243 - Xcc-8004.5030.1 0.25 +1.0 4,769,243 - Xcc-8004.5030.1 0.25 +0.0 4,769,243 - Xcc-8004.5030.1 0.25 -0.9 4,769,261 - Xcc-8004.5030.1 0.28 +0.4 4,769,261 - Xcc-8004.5030.1 0.28 +0.2 4,769,284 + Xcc-8004.5030.1 0.31 -0.0 4,769,284 + Xcc-8004.5030.1 0.31 +0.4 4,769,284 + Xcc-8004.5030.1 0.31 +0.4 4,769,284 + Xcc-8004.5030.1 0.31 +0.0 4,769,284 + Xcc-8004.5030.1 0.31 +2.0 4,769,285 - Xcc-8004.5030.1 0.31 -0.0 4,769,362 + Xcc-8004.5030.1 0.42 -0.2 4,769,362 + Xcc-8004.5030.1 0.42 +0.3 4,769,362 + Xcc-8004.5030.1 0.42 -1.2 4,769,363 - Xcc-8004.5030.1 0.42 -0.6 4,769,363 - Xcc-8004.5030.1 0.42 +0.6 4,769,378 - Xcc-8004.5030.1 0.45 +0.2 4,769,398 + Xcc-8004.5030.1 0.48 +0.3 4,769,398 + Xcc-8004.5030.1 0.48 +1.8 4,769,398 + Xcc-8004.5030.1 0.48 -1.1 4,769,398 + Xcc-8004.5030.1 0.48 -0.1 4,769,398 + Xcc-8004.5030.1 0.48 +0.1 4,769,399 - Xcc-8004.5030.1 0.48 +0.4 4,769,399 - Xcc-8004.5030.1 0.48 -0.3 4,769,399 - Xcc-8004.5030.1 0.48 +0.5 4,769,399 - Xcc-8004.5030.1 0.48 +0.5 4,769,399 - Xcc-8004.5030.1 0.48 +0.4 4,769,527 + Xcc-8004.5030.1 0.66 +0.4 4,769,527 + Xcc-8004.5030.1 0.66 +0.4 4,769,527 + Xcc-8004.5030.1 0.66 -0.2 4,769,527 + Xcc-8004.5030.1 0.66 +1.8 4,769,528 - Xcc-8004.5030.1 0.66 +0.2 4,769,528 - Xcc-8004.5030.1 0.66 -1.1 4,769,528 - Xcc-8004.5030.1 0.66 +0.2 4,769,528 - Xcc-8004.5030.1 0.66 +0.7 4,769,528 - Xcc-8004.5030.1 0.66 +0.5 4,769,664 - Xcc-8004.5030.1 0.86 -0.2 4,769,683 + Xcc-8004.5030.1 0.89 -0.1 4,769,684 - Xcc-8004.5030.1 0.89 -1.1 4,769,684 - Xcc-8004.5030.1 0.89 -0.3 4,769,684 - Xcc-8004.5030.1 0.89 -0.0 4,769,684 - Xcc-8004.5030.1 0.89 +0.8 4,769,684 - Xcc-8004.5030.1 0.89 +0.3 4,769,743 + -0.9 4,769,743 + +0.0 4,769,743 + +0.7 4,769,743 + +1.5 4,769,744 - -1.1 4,769,744 - +0.1 4,769,746 + +0.5 4,769,746 + -0.3 4,769,746 + +2.3 4,769,746 + +0.6 4,769,746 + -0.2 4,769,746 + +0.3 4,769,746 + -0.1 4,769,746 + -0.4 4,769,747 - +0.4 4,769,747 - -0.0 4,769,747 - -0.0 4,769,747 - -0.2 4,769,747 - -0.5 4,769,747 - +0.1 4,769,747 - +0.5 4,769,747 - +0.5 4,769,819 - +0.4 4,769,830 + +0.2 4,769,831 - -0.3 4,769,921 + -0.3 4,769,922 - +0.5 4,769,922 - +0.4 4,769,952 + -0.3 4,769,952 + +0.4 4,769,953 - +0.6 4,769,953 - -0.2 4,769,953 - +1.7 4,769,953 - +0.1 4,769,956 + +0.4 4,769,956 + +0.1 4,769,956 + +0.5 4,769,956 + -0.2 4,769,956 + -0.2 4,769,957 - +0.0 4,770,164 - +0.1 4,770,743 + Xcc-8004.5031.1 0.24 -0.0 4,770,743 + Xcc-8004.5031.1 0.24 +0.3 4,770,743 + Xcc-8004.5031.1 0.24 +0.2 4,770,744 - Xcc-8004.5031.1 0.24 +0.6
Or see this region's nucleotide sequence