Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4249.1

Experiment: Clovis xylem sap

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4247.1 and Xcc-8004.4248.1 are separated by 33 nucleotidesXcc-8004.4248.1 and Xcc-8004.4249.1 are separated by 86 nucleotidesXcc-8004.4249.1 and Xcc-8004.4250.1 overlap by 70 nucleotidesXcc-8004.4250.1 and Xcc-8004.4251.1 are separated by 15 nucleotidesXcc-8004.4251.1 and Xcc-8004.4252.1 are separated by 59 nucleotides Xcc-8004.4247.1: Xcc-8004.4247.1 - Transcriptional regulator, MarR family, at 4,069,963 to 4,070,433 Xcc-8004.4247.1 Xcc-8004.4248.1: Xcc-8004.4248.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 4,070,467 to 4,071,294 Xcc-8004.4248.1 Xcc-8004.4249.1: Xcc-8004.4249.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,071,381 to 4,072,535 Xcc-8004.4249.1 Xcc-8004.4250.1: Xcc-8004.4250.1 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,072,466 to 4,072,849 Xcc-8004.4250.1 Xcc-8004.4251.1: Xcc-8004.4251.1 - hypothetical protein, at 4,072,865 to 4,073,011 Xcc-8004.4251.1 Xcc-8004.4252.1: Xcc-8004.4252.1 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 4,073,071 to 4,074,543 Xcc-8004.4252.1 Position (kb) 4071 4072 4073Strain fitness (log2 ratio) -2 -1 0 1 2at 4070.439 kb on + strandat 4070.440 kb on - strandat 4070.454 kb on + strandat 4070.454 kb on + strandat 4070.455 kb on - strandat 4070.644 kb on - strand, within Xcc-8004.4248.1at 4070.678 kb on - strand, within Xcc-8004.4248.1at 4070.737 kb on + strand, within Xcc-8004.4248.1at 4070.738 kb on - strand, within Xcc-8004.4248.1at 4071.052 kb on - strand, within Xcc-8004.4248.1at 4071.142 kb on + strand, within Xcc-8004.4248.1at 4071.160 kb on + strand, within Xcc-8004.4248.1at 4071.160 kb on + strand, within Xcc-8004.4248.1at 4071.161 kb on - strand, within Xcc-8004.4248.1at 4071.247 kb on + strandat 4071.436 kb on + strandat 4071.437 kb on - strandat 4071.437 kb on - strandat 4071.523 kb on - strand, within Xcc-8004.4249.1at 4071.757 kb on - strand, within Xcc-8004.4249.1at 4071.759 kb on + strand, within Xcc-8004.4249.1at 4071.759 kb on + strand, within Xcc-8004.4249.1at 4071.759 kb on + strand, within Xcc-8004.4249.1at 4071.759 kb on + strand, within Xcc-8004.4249.1at 4071.897 kb on + strand, within Xcc-8004.4249.1at 4071.898 kb on - strand, within Xcc-8004.4249.1at 4071.898 kb on - strand, within Xcc-8004.4249.1at 4071.898 kb on - strand, within Xcc-8004.4249.1at 4071.972 kb on + strand, within Xcc-8004.4249.1at 4071.972 kb on + strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.973 kb on - strand, within Xcc-8004.4249.1at 4071.974 kb on + strand, within Xcc-8004.4249.1at 4071.975 kb on - strand, within Xcc-8004.4249.1at 4072.285 kb on + strand, within Xcc-8004.4249.1at 4072.326 kb on + strand, within Xcc-8004.4249.1at 4072.326 kb on + strand, within Xcc-8004.4249.1at 4072.327 kb on - strand, within Xcc-8004.4249.1at 4072.428 kb on + strandat 4072.429 kb on - strandat 4072.596 kb on - strand, within Xcc-8004.4250.1at 4072.662 kb on - strand, within Xcc-8004.4250.1at 4072.980 kb on + strand, within Xcc-8004.4251.1at 4072.992 kb on + strand, within Xcc-8004.4251.1at 4072.993 kb on - strand, within Xcc-8004.4251.1at 4072.993 kb on - strand, within Xcc-8004.4251.1at 4073.159 kb on - strandat 4073.305 kb on + strand, within Xcc-8004.4252.1at 4073.305 kb on + strand, within Xcc-8004.4252.1at 4073.306 kb on - strand, within Xcc-8004.4252.1at 4073.306 kb on - strand, within Xcc-8004.4252.1at 4073.306 kb on - strand, within Xcc-8004.4252.1at 4073.473 kb on + strand, within Xcc-8004.4252.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Clovis xylem sap
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4,070,439 + +0.0
4,070,440 - +1.0
4,070,454 + -0.9
4,070,454 + -0.7
4,070,455 - -1.7
4,070,644 - Xcc-8004.4248.1 0.21 -0.7
4,070,678 - Xcc-8004.4248.1 0.25 +0.4
4,070,737 + Xcc-8004.4248.1 0.33 -1.3
4,070,738 - Xcc-8004.4248.1 0.33 -1.3
4,071,052 - Xcc-8004.4248.1 0.71 +0.1
4,071,142 + Xcc-8004.4248.1 0.82 -0.1
4,071,160 + Xcc-8004.4248.1 0.84 +0.1
4,071,160 + Xcc-8004.4248.1 0.84 -0.2
4,071,161 - Xcc-8004.4248.1 0.84 +0.4
4,071,247 + +0.2
4,071,436 + +0.8
4,071,437 - -0.6
4,071,437 - +0.2
4,071,523 - Xcc-8004.4249.1 0.12 -0.3
4,071,757 - Xcc-8004.4249.1 0.33 -0.3
4,071,759 + Xcc-8004.4249.1 0.33 +0.6
4,071,759 + Xcc-8004.4249.1 0.33 +0.7
4,071,759 + Xcc-8004.4249.1 0.33 +0.6
4,071,759 + Xcc-8004.4249.1 0.33 +0.5
4,071,897 + Xcc-8004.4249.1 0.45 -0.4
4,071,898 - Xcc-8004.4249.1 0.45 +0.6
4,071,898 - Xcc-8004.4249.1 0.45 -0.5
4,071,898 - Xcc-8004.4249.1 0.45 -0.1
4,071,972 + Xcc-8004.4249.1 0.51 +0.5
4,071,972 + Xcc-8004.4249.1 0.51 +0.8
4,071,973 - Xcc-8004.4249.1 0.51 +0.6
4,071,973 - Xcc-8004.4249.1 0.51 +0.4
4,071,973 - Xcc-8004.4249.1 0.51 -0.4
4,071,973 - Xcc-8004.4249.1 0.51 +1.2
4,071,973 - Xcc-8004.4249.1 0.51 -0.5
4,071,973 - Xcc-8004.4249.1 0.51 +0.5
4,071,974 + Xcc-8004.4249.1 0.51 +1.2
4,071,975 - Xcc-8004.4249.1 0.51 +0.2
4,072,285 + Xcc-8004.4249.1 0.78 +2.0
4,072,326 + Xcc-8004.4249.1 0.82 +0.9
4,072,326 + Xcc-8004.4249.1 0.82 +1.0
4,072,327 - Xcc-8004.4249.1 0.82 -1.9
4,072,428 + -0.4
4,072,429 - +0.5
4,072,596 - Xcc-8004.4250.1 0.34 -1.0
4,072,662 - Xcc-8004.4250.1 0.51 +0.5
4,072,980 + Xcc-8004.4251.1 0.78 -0.3
4,072,992 + Xcc-8004.4251.1 0.86 -0.4
4,072,993 - Xcc-8004.4251.1 0.87 -0.4
4,072,993 - Xcc-8004.4251.1 0.87 +0.4
4,073,159 - -0.3
4,073,305 + Xcc-8004.4252.1 0.16 +1.3
4,073,305 + Xcc-8004.4252.1 0.16 -1.1
4,073,306 - Xcc-8004.4252.1 0.16 +0.8
4,073,306 - Xcc-8004.4252.1 0.16 +0.0
4,073,306 - Xcc-8004.4252.1 0.16 -0.4
4,073,473 + Xcc-8004.4252.1 0.27 +0.4

Or see this region's nucleotide sequence