Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02630

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS02625 and RS_RS02630 are separated by 79 nucleotidesRS_RS02630 and RS_RS02635 are separated by 185 nucleotidesRS_RS02635 and RS_RS02640 are separated by 2 nucleotides RS_RS02625: RS_RS02625 - apolipoprotein N-acyltransferase, at 565,208 to 566,719 _RS02625 RS_RS02630: RS_RS02630 - HlyC/CorC family transporter, at 566,799 to 567,695 _RS02630 RS_RS02635: RS_RS02635 - rRNA maturation RNase YbeY, at 567,881 to 568,648 _RS02635 RS_RS02640: RS_RS02640 - PhoH family protein, at 568,651 to 569,628 _RS02640 Position (kb) 566 567 568Strain fitness (log2 ratio) -2 -1 0 1at 567.121 kb on + strand, within RS_RS02630at 567.194 kb on - strand, within RS_RS02630at 567.326 kb on - strand, within RS_RS02630at 567.714 kb on + strandat 567.715 kb on - strandat 567.715 kb on - strandat 567.732 kb on - strandat 567.732 kb on - strandat 568.686 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
567,121 + RS_RS02630 0.36 -1.3
567,194 - RS_RS02630 0.44 +0.5
567,326 - RS_RS02630 0.59 +0.0
567,714 + -2.7
567,715 - -1.9
567,715 - +0.5
567,732 - -0.3
567,732 - -0.0
568,686 - +0.5

Or see this region's nucleotide sequence