Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36920

Experiment: D-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS36915 and RR42_RS36920 are separated by 225 nucleotidesRR42_RS36920 and RR42_RS36925 overlap by 4 nucleotides RR42_RS36915: RR42_RS36915 - LysR family transcriptional regulator, at 3,737,336 to 3,738,265 _RS36915 RR42_RS36920: RR42_RS36920 - TetR family transcriptional regulator, at 3,738,491 to 3,739,204 _RS36920 RR42_RS36925: RR42_RS36925 - carotenoid oxygenase, at 3,739,201 to 3,740,595 _RS36925 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -1 0 1 2at 3737.532 kb on + strand, within RR42_RS36915at 3737.533 kb on - strand, within RR42_RS36915at 3737.533 kb on - strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3738.041 kb on - strand, within RR42_RS36915at 3738.063 kb on + strand, within RR42_RS36915at 3738.064 kb on + strand, within RR42_RS36915at 3738.064 kb on - strand, within RR42_RS36915at 3738.776 kb on + strand, within RR42_RS36920at 3738.776 kb on + strand, within RR42_RS36920at 3738.959 kb on + strand, within RR42_RS36920at 3738.959 kb on + strand, within RR42_RS36920at 3739.228 kb on + strandat 3739.229 kb on - strandat 3739.324 kb on + strandat 3739.369 kb on + strand, within RR42_RS36925at 3739.370 kb on - strand, within RR42_RS36925at 3739.563 kb on + strand, within RR42_RS36925at 3739.564 kb on - strand, within RR42_RS36925at 3739.564 kb on - strand, within RR42_RS36925at 3739.564 kb on - strand, within RR42_RS36925at 3740.035 kb on + strand, within RR42_RS36925at 3740.036 kb on - strand, within RR42_RS36925at 3740.039 kb on + strand, within RR42_RS36925at 3740.039 kb on + strand, within RR42_RS36925at 3740.040 kb on - strand, within RR42_RS36925at 3740.040 kb on - strand, within RR42_RS36925at 3740.040 kb on - strand, within RR42_RS36925at 3740.099 kb on - strand, within RR42_RS36925at 3740.099 kb on - strand, within RR42_RS36925at 3740.204 kb on - strand, within RR42_RS36925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
remove
3,737,532 + RR42_RS36915 0.21 -0.2
3,737,533 - RR42_RS36915 0.21 +0.5
3,737,533 - RR42_RS36915 0.21 -0.0
3,737,926 + RR42_RS36915 0.63 +0.3
3,737,926 + RR42_RS36915 0.63 +0.6
3,737,926 + RR42_RS36915 0.63 +0.1
3,737,927 - RR42_RS36915 0.64 -0.3
3,737,927 - RR42_RS36915 0.64 -0.4
3,737,927 - RR42_RS36915 0.64 +0.2
3,737,961 + RR42_RS36915 0.67 -0.9
3,737,961 + RR42_RS36915 0.67 -0.8
3,737,961 + RR42_RS36915 0.67 +0.6
3,737,961 + RR42_RS36915 0.67 +0.6
3,737,962 - RR42_RS36915 0.67 -0.3
3,737,962 - RR42_RS36915 0.67 -0.7
3,737,962 - RR42_RS36915 0.67 +0.2
3,737,962 - RR42_RS36915 0.67 -1.2
3,737,962 - RR42_RS36915 0.67 -0.4
3,738,041 - RR42_RS36915 0.76 +1.8
3,738,063 + RR42_RS36915 0.78 -0.3
3,738,064 + RR42_RS36915 0.78 +0.4
3,738,064 - RR42_RS36915 0.78 -0.7
3,738,776 + RR42_RS36920 0.40 -0.1
3,738,776 + RR42_RS36920 0.40 -0.3
3,738,959 + RR42_RS36920 0.66 +1.8
3,738,959 + RR42_RS36920 0.66 +2.0
3,739,228 + -0.4
3,739,229 - -0.3
3,739,324 + -0.2
3,739,369 + RR42_RS36925 0.12 +0.0
3,739,370 - RR42_RS36925 0.12 +0.7
3,739,563 + RR42_RS36925 0.26 -1.0
3,739,564 - RR42_RS36925 0.26 +0.3
3,739,564 - RR42_RS36925 0.26 -0.8
3,739,564 - RR42_RS36925 0.26 +1.0
3,740,035 + RR42_RS36925 0.60 -0.2
3,740,036 - RR42_RS36925 0.60 -1.0
3,740,039 + RR42_RS36925 0.60 +0.5
3,740,039 + RR42_RS36925 0.60 +0.1
3,740,040 - RR42_RS36925 0.60 +0.4
3,740,040 - RR42_RS36925 0.60 +0.3
3,740,040 - RR42_RS36925 0.60 +0.3
3,740,099 - RR42_RS36925 0.64 -0.2
3,740,099 - RR42_RS36925 0.64 +0.0
3,740,204 - RR42_RS36925 0.72 -0.2

Or see this region's nucleotide sequence