Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29450

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29445 and RR42_RS29450 are separated by 10 nucleotidesRR42_RS29450 and RR42_RS29455 are separated by 23 nucleotidesRR42_RS29455 and RR42_RS29460 are separated by 69 nucleotides RR42_RS29445: RR42_RS29445 - ABC transporter permease, at 1,961,089 to 1,962,165 _RS29445 RR42_RS29450: RR42_RS29450 - ABC transporter, at 1,962,176 to 1,962,973 _RS29450 RR42_RS29455: RR42_RS29455 - ABC transporter ATP-binding protein, at 1,962,997 to 1,963,782 _RS29455 RR42_RS29460: RR42_RS29460 - fatty-acid--CoA ligase, at 1,963,852 to 1,965,681 _RS29460 Position (kb) 1962 1963Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1961.245 kb on + strand, within RR42_RS29445at 1961.246 kb on - strand, within RR42_RS29445at 1961.335 kb on + strand, within RR42_RS29445at 1961.335 kb on + strand, within RR42_RS29445at 1961.336 kb on - strand, within RR42_RS29445at 1961.336 kb on - strand, within RR42_RS29445at 1961.337 kb on + strand, within RR42_RS29445at 1961.337 kb on + strand, within RR42_RS29445at 1961.338 kb on - strand, within RR42_RS29445at 1961.338 kb on - strand, within RR42_RS29445at 1961.338 kb on - strand, within RR42_RS29445at 1961.458 kb on + strand, within RR42_RS29445at 1961.458 kb on + strand, within RR42_RS29445at 1961.458 kb on + strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.459 kb on - strand, within RR42_RS29445at 1961.575 kb on + strand, within RR42_RS29445at 1961.575 kb on + strand, within RR42_RS29445at 1961.576 kb on - strand, within RR42_RS29445at 1961.576 kb on - strand, within RR42_RS29445at 1961.576 kb on - strand, within RR42_RS29445at 1961.602 kb on + strand, within RR42_RS29445at 1961.602 kb on + strand, within RR42_RS29445at 1961.603 kb on - strand, within RR42_RS29445at 1961.603 kb on - strand, within RR42_RS29445at 1961.605 kb on + strand, within RR42_RS29445at 1961.605 kb on + strand, within RR42_RS29445at 1961.606 kb on - strand, within RR42_RS29445at 1961.606 kb on - strand, within RR42_RS29445at 1961.606 kb on - strand, within RR42_RS29445at 1961.797 kb on + strand, within RR42_RS29445at 1961.797 kb on + strand, within RR42_RS29445at 1961.816 kb on - strand, within RR42_RS29445at 1961.816 kb on - strand, within RR42_RS29445at 1961.816 kb on - strand, within RR42_RS29445at 1961.817 kb on + strand, within RR42_RS29445at 1961.818 kb on - strand, within RR42_RS29445at 1961.818 kb on - strand, within RR42_RS29445at 1962.010 kb on + strand, within RR42_RS29445at 1962.085 kb on + strandat 1962.086 kb on - strandat 1962.107 kb on - strandat 1962.164 kb on - strandat 1962.164 kb on - strandat 1962.277 kb on + strand, within RR42_RS29450at 1962.278 kb on - strand, within RR42_RS29450at 1962.338 kb on + strand, within RR42_RS29450at 1962.338 kb on + strand, within RR42_RS29450at 1962.339 kb on - strand, within RR42_RS29450at 1962.339 kb on - strand, within RR42_RS29450at 1962.440 kb on - strand, within RR42_RS29450at 1962.440 kb on - strand, within RR42_RS29450at 1962.440 kb on - strand, within RR42_RS29450at 1962.641 kb on + strand, within RR42_RS29450at 1962.642 kb on - strand, within RR42_RS29450at 1962.926 kb on + strandat 1962.948 kb on + strandat 1962.948 kb on + strandat 1962.948 kb on + strandat 1962.949 kb on - strandat 1962.949 kb on - strandat 1962.949 kb on - strandat 1963.051 kb on + strandat 1963.052 kb on - strandat 1963.052 kb on - strandat 1963.324 kb on + strand, within RR42_RS29455at 1963.324 kb on + strand, within RR42_RS29455at 1963.325 kb on - strand, within RR42_RS29455at 1963.373 kb on - strand, within RR42_RS29455at 1963.608 kb on + strand, within RR42_RS29455at 1963.608 kb on + strand, within RR42_RS29455at 1963.609 kb on - strand, within RR42_RS29455at 1963.630 kb on + strand, within RR42_RS29455at 1963.630 kb on + strand, within RR42_RS29455at 1963.631 kb on - strand, within RR42_RS29455at 1963.631 kb on - strand, within RR42_RS29455at 1963.636 kb on + strand, within RR42_RS29455at 1963.637 kb on - strand, within RR42_RS29455at 1963.637 kb on - strand, within RR42_RS29455at 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.969 kb on + strandat 1963.969 kb on + strandat 1963.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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1,961,245 + RR42_RS29445 0.14 -0.3
1,961,246 - RR42_RS29445 0.15 +0.2
1,961,335 + RR42_RS29445 0.23 +0.3
1,961,335 + RR42_RS29445 0.23 -3.7
1,961,336 - RR42_RS29445 0.23 -0.7
1,961,336 - RR42_RS29445 0.23 +0.2
1,961,337 + RR42_RS29445 0.23 -0.9
1,961,337 + RR42_RS29445 0.23 +0.2
1,961,338 - RR42_RS29445 0.23 +0.6
1,961,338 - RR42_RS29445 0.23 -0.5
1,961,338 - RR42_RS29445 0.23 +0.3
1,961,458 + RR42_RS29445 0.34 -0.7
1,961,458 + RR42_RS29445 0.34 -0.1
1,961,458 + RR42_RS29445 0.34 -0.5
1,961,459 - RR42_RS29445 0.34 +0.1
1,961,459 - RR42_RS29445 0.34 -0.3
1,961,459 - RR42_RS29445 0.34 +0.1
1,961,459 - RR42_RS29445 0.34 +0.1
1,961,459 - RR42_RS29445 0.34 -0.3
1,961,459 - RR42_RS29445 0.34 -0.3
1,961,575 + RR42_RS29445 0.45 +0.3
1,961,575 + RR42_RS29445 0.45 +0.1
1,961,576 - RR42_RS29445 0.45 -0.2
1,961,576 - RR42_RS29445 0.45 +0.4
1,961,576 - RR42_RS29445 0.45 -0.1
1,961,602 + RR42_RS29445 0.48 +0.3
1,961,602 + RR42_RS29445 0.48 -0.7
1,961,603 - RR42_RS29445 0.48 -0.3
1,961,603 - RR42_RS29445 0.48 -0.5
1,961,605 + RR42_RS29445 0.48 -0.2
1,961,605 + RR42_RS29445 0.48 +1.6
1,961,606 - RR42_RS29445 0.48 +0.9
1,961,606 - RR42_RS29445 0.48 +0.2
1,961,606 - RR42_RS29445 0.48 +1.5
1,961,797 + RR42_RS29445 0.66 -0.5
1,961,797 + RR42_RS29445 0.66 -0.4
1,961,816 - RR42_RS29445 0.68 -1.2
1,961,816 - RR42_RS29445 0.68 +0.7
1,961,816 - RR42_RS29445 0.68 +0.0
1,961,817 + RR42_RS29445 0.68 +0.1
1,961,818 - RR42_RS29445 0.68 -0.2
1,961,818 - RR42_RS29445 0.68 +0.2
1,962,010 + RR42_RS29445 0.86 +0.0
1,962,085 + -0.8
1,962,086 - +0.4
1,962,107 - +0.1
1,962,164 - +0.7
1,962,164 - +0.3
1,962,277 + RR42_RS29450 0.13 -0.1
1,962,278 - RR42_RS29450 0.13 +1.1
1,962,338 + RR42_RS29450 0.20 -1.2
1,962,338 + RR42_RS29450 0.20 +0.1
1,962,339 - RR42_RS29450 0.20 +0.2
1,962,339 - RR42_RS29450 0.20 +0.7
1,962,440 - RR42_RS29450 0.33 +0.2
1,962,440 - RR42_RS29450 0.33 +0.8
1,962,440 - RR42_RS29450 0.33 +0.0
1,962,641 + RR42_RS29450 0.58 +0.8
1,962,642 - RR42_RS29450 0.58 +0.3
1,962,926 + +0.7
1,962,948 + +0.5
1,962,948 + +1.5
1,962,948 + -2.0
1,962,949 - +0.1
1,962,949 - +0.5
1,962,949 - +0.3
1,963,051 + -0.5
1,963,052 - -1.0
1,963,052 - +0.3
1,963,324 + RR42_RS29455 0.42 +2.7
1,963,324 + RR42_RS29455 0.42 -0.7
1,963,325 - RR42_RS29455 0.42 -0.8
1,963,373 - RR42_RS29455 0.48 +0.2
1,963,608 + RR42_RS29455 0.78 -0.2
1,963,608 + RR42_RS29455 0.78 -0.3
1,963,609 - RR42_RS29455 0.78 -0.1
1,963,630 + RR42_RS29455 0.81 -1.0
1,963,630 + RR42_RS29455 0.81 +1.0
1,963,631 - RR42_RS29455 0.81 +0.5
1,963,631 - RR42_RS29455 0.81 +0.6
1,963,636 + RR42_RS29455 0.81 +0.1
1,963,637 - RR42_RS29455 0.81 -0.8
1,963,637 - RR42_RS29455 0.81 +0.0
1,963,714 + -0.7
1,963,714 + +0.2
1,963,714 + -1.2
1,963,714 + +0.9
1,963,969 + -0.2
1,963,969 + +0.0
1,963,969 + -0.7

Or see this region's nucleotide sequence