Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26315 and RR42_RS26320 are separated by 163 nucleotides RR42_RS26320 and RR42_RS26325 overlap by 4 nucleotides RR42_RS26325 and RR42_RS26330 overlap by 4 nucleotides RR42_RS26330 and RR42_RS26335 are separated by 48 nucleotides
RR42_RS26315: RR42_RS26315 - MFS transporter, at 1,263,656 to 1,264,642
_RS26315
RR42_RS26320: RR42_RS26320 - LysR family transcriptional regulator, at 1,264,806 to 1,265,723
_RS26320
RR42_RS26325: RR42_RS26325 - hypothetical protein, at 1,265,720 to 1,265,929
_RS26325
RR42_RS26330: RR42_RS26330 - hypothetical protein, at 1,265,926 to 1,266,414
_RS26330
RR42_RS26335: RR42_RS26335 - hypothetical protein, at 1,266,463 to 1,266,927
_RS26335
Position (kb) 1264
1265
1266 Strain fitness (log2 ratio) -1
0
1 at 1263.829 kb on + strand, within RR42_RS26315 at 1263.830 kb on - strand, within RR42_RS26315 at 1263.873 kb on + strand, within RR42_RS26315 at 1263.874 kb on - strand, within RR42_RS26315 at 1264.084 kb on - strand, within RR42_RS26315 at 1264.201 kb on - strand, within RR42_RS26315 at 1264.201 kb on - strand, within RR42_RS26315 at 1264.201 kb on - strand, within RR42_RS26315 at 1264.201 kb on - strand, within RR42_RS26315 at 1264.323 kb on + strand, within RR42_RS26315 at 1264.359 kb on - strand, within RR42_RS26315 at 1264.359 kb on - strand, within RR42_RS26315 at 1264.371 kb on + strand, within RR42_RS26315 at 1264.371 kb on + strand, within RR42_RS26315 at 1264.371 kb on + strand, within RR42_RS26315 at 1264.372 kb on - strand, within RR42_RS26315 at 1264.521 kb on + strand, within RR42_RS26315 at 1264.555 kb on - strand at 1264.693 kb on + strand at 1264.694 kb on - strand at 1264.723 kb on + strand at 1264.723 kb on + strand at 1264.724 kb on - strand at 1264.839 kb on + strand at 1264.945 kb on + strand, within RR42_RS26320 at 1264.946 kb on - strand, within RR42_RS26320 at 1265.166 kb on + strand, within RR42_RS26320 at 1265.509 kb on - strand, within RR42_RS26320 at 1265.927 kb on + strand at 1266.222 kb on - strand, within RR42_RS26330 at 1266.233 kb on + strand, within RR42_RS26330 at 1266.234 kb on - strand, within RR42_RS26330 at 1266.234 kb on - strand, within RR42_RS26330 at 1266.234 kb on - strand, within RR42_RS26330 at 1266.234 kb on - strand, within RR42_RS26330 at 1266.343 kb on + strand, within RR42_RS26330 at 1266.343 kb on + strand, within RR42_RS26330 at 1266.388 kb on - strand at 1266.438 kb on + strand at 1266.438 kb on + strand at 1266.438 kb on + strand at 1266.439 kb on - strand at 1266.439 kb on - strand at 1266.439 kb on - strand at 1266.628 kb on + strand, within RR42_RS26335 at 1266.629 kb on - strand, within RR42_RS26335 at 1266.677 kb on + strand, within RR42_RS26335
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 1,263,829 + RR42_RS26315 0.18 +0.3 1,263,830 - RR42_RS26315 0.18 +0.5 1,263,873 + RR42_RS26315 0.22 -0.8 1,263,874 - RR42_RS26315 0.22 +1.4 1,264,084 - RR42_RS26315 0.43 -0.2 1,264,201 - RR42_RS26315 0.55 +0.3 1,264,201 - RR42_RS26315 0.55 +0.1 1,264,201 - RR42_RS26315 0.55 +0.7 1,264,201 - RR42_RS26315 0.55 +0.7 1,264,323 + RR42_RS26315 0.68 -0.2 1,264,359 - RR42_RS26315 0.71 +0.2 1,264,359 - RR42_RS26315 0.71 +0.7 1,264,371 + RR42_RS26315 0.72 +0.4 1,264,371 + RR42_RS26315 0.72 +0.3 1,264,371 + RR42_RS26315 0.72 -0.5 1,264,372 - RR42_RS26315 0.73 -0.3 1,264,521 + RR42_RS26315 0.88 -0.0 1,264,555 - +0.1 1,264,693 + -0.3 1,264,694 - -0.0 1,264,723 + +0.7 1,264,723 + -0.6 1,264,724 - -0.9 1,264,839 + +0.3 1,264,945 + RR42_RS26320 0.15 +0.6 1,264,946 - RR42_RS26320 0.15 +0.6 1,265,166 + RR42_RS26320 0.39 -1.2 1,265,509 - RR42_RS26320 0.77 +0.5 1,265,927 + +0.3 1,266,222 - RR42_RS26330 0.61 +0.0 1,266,233 + RR42_RS26330 0.63 -0.3 1,266,234 - RR42_RS26330 0.63 +1.0 1,266,234 - RR42_RS26330 0.63 -0.3 1,266,234 - RR42_RS26330 0.63 -0.6 1,266,234 - RR42_RS26330 0.63 +0.2 1,266,343 + RR42_RS26330 0.85 -0.3 1,266,343 + RR42_RS26330 0.85 +0.2 1,266,388 - +0.8 1,266,438 + +1.0 1,266,438 + -0.7 1,266,438 + -0.3 1,266,439 - -0.3 1,266,439 - -0.5 1,266,439 - -0.1 1,266,628 + RR42_RS26335 0.35 -0.3 1,266,629 - RR42_RS26335 0.36 +0.7 1,266,677 + RR42_RS26335 0.46 -0.1
Or see this region's nucleotide sequence