Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24000 and RR42_RS24005 are separated by 98 nucleotides RR42_RS24005 and RR42_RS24010 are separated by 37 nucleotides RR42_RS24010 and RR42_RS24015 are separated by 103 nucleotides
RR42_RS24000: RR42_RS24000 - hypothetical protein, at 709,876 to 710,391
_RS24000
RR42_RS24005: RR42_RS24005 - hypothetical protein, at 710,490 to 710,891
_RS24005
RR42_RS24010: RR42_RS24010 - hypothetical protein, at 710,929 to 711,201
_RS24010
RR42_RS24015: RR42_RS24015 - LysR family transcriptional regulator, at 711,305 to 712,261
_RS24015
Position (kb) 710
711
712 Strain fitness (log2 ratio) -1
0
1 at 709.966 kb on + strand, within RR42_RS24000 at 709.999 kb on + strand, within RR42_RS24000 at 710.000 kb on - strand, within RR42_RS24000 at 710.000 kb on - strand, within RR42_RS24000 at 710.072 kb on + strand, within RR42_RS24000 at 710.073 kb on - strand, within RR42_RS24000 at 710.073 kb on - strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.227 kb on + strand, within RR42_RS24000 at 710.228 kb on - strand, within RR42_RS24000 at 710.373 kb on + strand at 710.464 kb on + strand at 710.464 kb on + strand at 710.628 kb on + strand, within RR42_RS24005 at 710.628 kb on + strand, within RR42_RS24005 at 710.658 kb on + strand, within RR42_RS24005 at 710.659 kb on - strand, within RR42_RS24005 at 710.677 kb on - strand, within RR42_RS24005 at 710.862 kb on + strand at 710.862 kb on + strand at 710.863 kb on - strand at 710.876 kb on + strand at 710.876 kb on + strand at 710.877 kb on - strand at 710.877 kb on - strand at 710.877 kb on - strand at 710.987 kb on + strand, within RR42_RS24010 at 710.988 kb on - strand, within RR42_RS24010 at 711.009 kb on - strand, within RR42_RS24010 at 711.094 kb on + strand, within RR42_RS24010 at 711.095 kb on - strand, within RR42_RS24010 at 711.231 kb on - strand at 711.258 kb on - strand at 711.258 kb on - strand at 711.258 kb on - strand at 711.260 kb on + strand at 711.261 kb on - strand at 711.270 kb on + strand at 711.270 kb on + strand at 711.271 kb on - strand at 711.271 kb on - strand at 711.271 kb on - strand at 711.274 kb on + strand at 711.275 kb on - strand at 711.385 kb on - strand at 711.395 kb on + strand at 711.395 kb on + strand at 711.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 709,966 + RR42_RS24000 0.17 -0.1 709,999 + RR42_RS24000 0.24 -0.3 710,000 - RR42_RS24000 0.24 -0.6 710,000 - RR42_RS24000 0.24 +0.3 710,072 + RR42_RS24000 0.38 +0.4 710,073 - RR42_RS24000 0.38 +0.7 710,073 - RR42_RS24000 0.38 +0.6 710,227 + RR42_RS24000 0.68 -0.0 710,227 + RR42_RS24000 0.68 -0.7 710,227 + RR42_RS24000 0.68 -0.8 710,228 - RR42_RS24000 0.68 -0.5 710,373 + +0.7 710,464 + +0.3 710,464 + -0.0 710,628 + RR42_RS24005 0.34 -0.8 710,628 + RR42_RS24005 0.34 +0.5 710,658 + RR42_RS24005 0.42 -0.2 710,659 - RR42_RS24005 0.42 -0.7 710,677 - RR42_RS24005 0.47 -0.1 710,862 + -0.3 710,862 + +0.7 710,863 - +0.2 710,876 + -0.4 710,876 + -0.1 710,877 - +0.7 710,877 - +0.1 710,877 - -1.4 710,987 + RR42_RS24010 0.21 -1.2 710,988 - RR42_RS24010 0.22 +0.7 711,009 - RR42_RS24010 0.29 +1.2 711,094 + RR42_RS24010 0.60 +1.7 711,095 - RR42_RS24010 0.61 -1.3 711,231 - -0.3 711,258 - -0.1 711,258 - +1.1 711,258 - -0.3 711,260 + -0.6 711,261 - -0.4 711,270 + +0.5 711,270 + +0.9 711,271 - -0.5 711,271 - +0.7 711,271 - -0.1 711,274 + -0.1 711,275 - +0.2 711,385 - -0.2 711,395 + -0.1 711,395 + +0.6 711,396 - +0.0
Or see this region's nucleotide sequence