Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23970

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23965 and RR42_RS23970 are separated by 172 nucleotidesRR42_RS23970 and RR42_RS23975 are separated by 71 nucleotides RR42_RS23965: RR42_RS23965 - hypothetical protein, at 701,867 to 704,476 _RS23965 RR42_RS23970: RR42_RS23970 - hypothetical protein, at 704,649 to 704,867 _RS23970 RR42_RS23975: RR42_RS23975 - hypothetical protein, at 704,939 to 705,865 _RS23975 Position (kb) 704 705Strain fitness (log2 ratio) -1 0 1 2at 703.723 kb on + strand, within RR42_RS23965at 703.724 kb on - strand, within RR42_RS23965at 703.924 kb on + strand, within RR42_RS23965at 703.925 kb on - strand, within RR42_RS23965at 703.932 kb on + strand, within RR42_RS23965at 703.932 kb on + strand, within RR42_RS23965at 703.936 kb on + strand, within RR42_RS23965at 704.103 kb on - strand, within RR42_RS23965at 704.184 kb on + strand, within RR42_RS23965at 704.185 kb on - strand, within RR42_RS23965at 704.185 kb on - strand, within RR42_RS23965at 704.251 kb on + strandat 704.252 kb on - strandat 704.401 kb on + strandat 704.536 kb on - strandat 704.722 kb on + strand, within RR42_RS23970at 704.723 kb on - strand, within RR42_RS23970at 704.778 kb on - strand, within RR42_RS23970at 704.813 kb on - strand, within RR42_RS23970at 704.869 kb on - strandat 704.904 kb on + strandat 704.905 kb on + strandat 704.905 kb on + strandat 704.936 kb on + strandat 704.936 kb on + strandat 704.937 kb on - strandat 704.937 kb on - strandat 704.937 kb on - strandat 704.937 kb on - strandat 704.937 kb on - strandat 704.941 kb on - strandat 704.941 kb on - strandat 704.973 kb on - strandat 705.249 kb on - strand, within RR42_RS23975at 705.266 kb on - strand, within RR42_RS23975at 705.290 kb on + strand, within RR42_RS23975at 705.290 kb on + strand, within RR42_RS23975at 705.290 kb on + strand, within RR42_RS23975at 705.294 kb on + strand, within RR42_RS23975at 705.299 kb on - strand, within RR42_RS23975at 705.343 kb on - strand, within RR42_RS23975at 705.343 kb on - strand, within RR42_RS23975at 705.486 kb on + strand, within RR42_RS23975at 705.583 kb on - strand, within RR42_RS23975at 705.583 kb on - strand, within RR42_RS23975at 705.596 kb on - strand, within RR42_RS23975at 705.804 kb on + strandat 705.804 kb on + strandat 705.827 kb on + strandat 705.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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703,723 + RR42_RS23965 0.71 +0.2
703,724 - RR42_RS23965 0.71 +0.8
703,924 + RR42_RS23965 0.79 -0.9
703,925 - RR42_RS23965 0.79 -1.6
703,932 + RR42_RS23965 0.79 -0.6
703,932 + RR42_RS23965 0.79 -0.5
703,936 + RR42_RS23965 0.79 +1.3
704,103 - RR42_RS23965 0.86 +2.3
704,184 + RR42_RS23965 0.89 +0.4
704,185 - RR42_RS23965 0.89 -1.0
704,185 - RR42_RS23965 0.89 +0.0
704,251 + -0.4
704,252 - +1.1
704,401 + +0.9
704,536 - +0.3
704,722 + RR42_RS23970 0.33 +0.8
704,723 - RR42_RS23970 0.34 +0.6
704,778 - RR42_RS23970 0.59 +0.6
704,813 - RR42_RS23970 0.75 +0.1
704,869 - +0.7
704,904 + +0.8
704,905 + -0.5
704,905 + +0.8
704,936 + -0.3
704,936 + -0.2
704,937 - +0.2
704,937 - +0.8
704,937 - +0.4
704,937 - +0.8
704,937 - +1.3
704,941 - +0.2
704,941 - -1.0
704,973 - -0.2
705,249 - RR42_RS23975 0.33 +0.0
705,266 - RR42_RS23975 0.35 +0.7
705,290 + RR42_RS23975 0.38 +0.1
705,290 + RR42_RS23975 0.38 -0.1
705,290 + RR42_RS23975 0.38 -0.0
705,294 + RR42_RS23975 0.38 +0.3
705,299 - RR42_RS23975 0.39 +0.4
705,343 - RR42_RS23975 0.44 +0.5
705,343 - RR42_RS23975 0.44 -0.2
705,486 + RR42_RS23975 0.59 -0.3
705,583 - RR42_RS23975 0.69 +1.7
705,583 - RR42_RS23975 0.69 +0.2
705,596 - RR42_RS23975 0.71 +0.2
705,804 + +1.1
705,804 + -0.3
705,827 + +0.2
705,827 + -0.8

Or see this region's nucleotide sequence