Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23965 and RR42_RS23970 are separated by 172 nucleotides RR42_RS23970 and RR42_RS23975 are separated by 71 nucleotides
RR42_RS23965: RR42_RS23965 - hypothetical protein, at 701,867 to 704,476
_RS23965
RR42_RS23970: RR42_RS23970 - hypothetical protein, at 704,649 to 704,867
_RS23970
RR42_RS23975: RR42_RS23975 - hypothetical protein, at 704,939 to 705,865
_RS23975
Position (kb)
704
705 Strain fitness (log2 ratio)
-1
0
1
2 at 703.723 kb on + strand, within RR42_RS23965 at 703.724 kb on - strand, within RR42_RS23965 at 703.924 kb on + strand, within RR42_RS23965 at 703.925 kb on - strand, within RR42_RS23965 at 703.932 kb on + strand, within RR42_RS23965 at 703.932 kb on + strand, within RR42_RS23965 at 703.936 kb on + strand, within RR42_RS23965 at 704.103 kb on - strand, within RR42_RS23965 at 704.184 kb on + strand, within RR42_RS23965 at 704.185 kb on - strand, within RR42_RS23965 at 704.185 kb on - strand, within RR42_RS23965 at 704.251 kb on + strand at 704.252 kb on - strand at 704.401 kb on + strand at 704.536 kb on - strand at 704.722 kb on + strand, within RR42_RS23970 at 704.723 kb on - strand, within RR42_RS23970 at 704.778 kb on - strand, within RR42_RS23970 at 704.813 kb on - strand, within RR42_RS23970 at 704.869 kb on - strand at 704.904 kb on + strand at 704.905 kb on + strand at 704.905 kb on + strand at 704.936 kb on + strand at 704.936 kb on + strand at 704.937 kb on - strand at 704.937 kb on - strand at 704.937 kb on - strand at 704.937 kb on - strand at 704.937 kb on - strand at 704.941 kb on - strand at 704.941 kb on - strand at 704.973 kb on - strand at 705.249 kb on - strand, within RR42_RS23975 at 705.266 kb on - strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.290 kb on + strand, within RR42_RS23975 at 705.294 kb on + strand, within RR42_RS23975 at 705.299 kb on - strand, within RR42_RS23975 at 705.343 kb on - strand, within RR42_RS23975 at 705.343 kb on - strand, within RR42_RS23975 at 705.486 kb on + strand, within RR42_RS23975 at 705.583 kb on - strand, within RR42_RS23975 at 705.583 kb on - strand, within RR42_RS23975 at 705.596 kb on - strand, within RR42_RS23975 at 705.804 kb on + strand at 705.804 kb on + strand at 705.827 kb on + strand at 705.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 703,723 + RR42_RS23965 0.71 +0.2 703,724 - RR42_RS23965 0.71 +0.8 703,924 + RR42_RS23965 0.79 -0.9 703,925 - RR42_RS23965 0.79 -1.6 703,932 + RR42_RS23965 0.79 -0.6 703,932 + RR42_RS23965 0.79 -0.5 703,936 + RR42_RS23965 0.79 +1.3 704,103 - RR42_RS23965 0.86 +2.3 704,184 + RR42_RS23965 0.89 +0.4 704,185 - RR42_RS23965 0.89 -1.0 704,185 - RR42_RS23965 0.89 +0.0 704,251 + -0.4 704,252 - +1.1 704,401 + +0.9 704,536 - +0.3 704,722 + RR42_RS23970 0.33 +0.8 704,723 - RR42_RS23970 0.34 +0.6 704,778 - RR42_RS23970 0.59 +0.6 704,813 - RR42_RS23970 0.75 +0.1 704,869 - +0.7 704,904 + +0.8 704,905 + -0.5 704,905 + +0.8 704,936 + -0.3 704,936 + -0.2 704,937 - +0.2 704,937 - +0.8 704,937 - +0.4 704,937 - +0.8 704,937 - +1.3 704,941 - +0.2 704,941 - -1.0 704,973 - -0.2 705,249 - RR42_RS23975 0.33 +0.0 705,266 - RR42_RS23975 0.35 +0.7 705,290 + RR42_RS23975 0.38 +0.1 705,290 + RR42_RS23975 0.38 -0.1 705,290 + RR42_RS23975 0.38 -0.0 705,294 + RR42_RS23975 0.38 +0.3 705,299 - RR42_RS23975 0.39 +0.4 705,343 - RR42_RS23975 0.44 +0.5 705,343 - RR42_RS23975 0.44 -0.2 705,486 + RR42_RS23975 0.59 -0.3 705,583 - RR42_RS23975 0.69 +1.7 705,583 - RR42_RS23975 0.69 +0.2 705,596 - RR42_RS23975 0.71 +0.2 705,804 + +1.1 705,804 + -0.3 705,827 + +0.2 705,827 + -0.8
Or see this region's nucleotide sequence