Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22890 and RR42_RS22895 are separated by 287 nucleotides RR42_RS22895 and RR42_RS22900 overlap by 4 nucleotides
RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667
_RS22890
RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084
_RS22895
RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814
_RS22900
Position (kb) 467
468
469
470
471 Strain fitness (log2 ratio) -2
-1
0
1 at 467.033 kb on + strand, within RR42_RS22890 at 467.033 kb on + strand, within RR42_RS22890 at 467.034 kb on - strand, within RR42_RS22890 at 467.124 kb on - strand, within RR42_RS22890 at 467.141 kb on + strand, within RR42_RS22890 at 467.142 kb on - strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.166 kb on + strand, within RR42_RS22890 at 467.170 kb on + strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.171 kb on - strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.495 kb on + strand, within RR42_RS22890 at 467.502 kb on - strand, within RR42_RS22890 at 467.752 kb on + strand at 468.372 kb on - strand, within RR42_RS22895 at 468.400 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.468 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.470 kb on + strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.471 kb on - strand, within RR42_RS22895 at 468.574 kb on - strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.606 kb on + strand, within RR42_RS22895 at 468.607 kb on - strand, within RR42_RS22895 at 468.630 kb on + strand, within RR42_RS22895 at 468.951 kb on + strand, within RR42_RS22895 at 468.951 kb on + strand, within RR42_RS22895 at 468.951 kb on + strand, within RR42_RS22895 at 468.952 kb on - strand, within RR42_RS22895 at 468.965 kb on - strand, within RR42_RS22895 at 469.722 kb on - strand, within RR42_RS22895 at 469.722 kb on - strand, within RR42_RS22895 at 469.809 kb on + strand, within RR42_RS22895 at 470.414 kb on + strand, within RR42_RS22900 at 470.513 kb on + strand, within RR42_RS22900 at 470.550 kb on - strand, within RR42_RS22900 at 470.622 kb on + strand, within RR42_RS22900 at 470.623 kb on - strand, within RR42_RS22900 at 470.642 kb on + strand, within RR42_RS22900 at 470.673 kb on + strand, within RR42_RS22900 at 470.673 kb on + strand, within RR42_RS22900 at 470.674 kb on - strand, within RR42_RS22900 at 470.804 kb on + strand, within RR42_RS22900 at 470.804 kb on + strand, within RR42_RS22900 at 470.805 kb on - strand, within RR42_RS22900 at 470.874 kb on - strand, within RR42_RS22900 at 470.888 kb on + strand, within RR42_RS22900 at 470.939 kb on + strand, within RR42_RS22900 at 470.940 kb on - strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 467,033 + RR42_RS22890 0.13 -1.1 467,033 + RR42_RS22890 0.13 -0.3 467,034 - RR42_RS22890 0.13 -1.1 467,124 - RR42_RS22890 0.26 -1.3 467,141 + RR42_RS22890 0.28 +0.6 467,142 - RR42_RS22890 0.28 -1.2 467,166 + RR42_RS22890 0.31 -1.7 467,166 + RR42_RS22890 0.31 -0.3 467,166 + RR42_RS22890 0.31 -0.9 467,166 + RR42_RS22890 0.31 +0.3 467,170 + RR42_RS22890 0.32 -1.2 467,171 - RR42_RS22890 0.32 -1.1 467,171 - RR42_RS22890 0.32 +0.3 467,495 + RR42_RS22890 0.76 -0.3 467,495 + RR42_RS22890 0.76 -1.2 467,502 - RR42_RS22890 0.77 -2.5 467,752 + +0.4 468,372 - RR42_RS22895 0.20 -0.6 468,400 + RR42_RS22895 0.21 -0.9 468,468 + RR42_RS22895 0.24 +0.1 468,468 + RR42_RS22895 0.24 -0.1 468,468 + RR42_RS22895 0.24 +0.0 468,468 + RR42_RS22895 0.24 +0.3 468,468 + RR42_RS22895 0.24 +0.6 468,470 + RR42_RS22895 0.24 -0.2 468,470 + RR42_RS22895 0.24 -0.5 468,471 - RR42_RS22895 0.24 -0.6 468,471 - RR42_RS22895 0.24 +1.6 468,471 - RR42_RS22895 0.24 -0.2 468,574 - RR42_RS22895 0.29 +0.6 468,606 + RR42_RS22895 0.31 -1.2 468,606 + RR42_RS22895 0.31 -0.3 468,607 - RR42_RS22895 0.31 -0.3 468,630 + RR42_RS22895 0.32 +0.1 468,951 + RR42_RS22895 0.47 +0.3 468,951 + RR42_RS22895 0.47 +0.2 468,951 + RR42_RS22895 0.47 -0.0 468,952 - RR42_RS22895 0.47 -0.3 468,965 - RR42_RS22895 0.47 -1.4 469,722 - RR42_RS22895 0.83 -0.9 469,722 - RR42_RS22895 0.83 -1.9 469,809 + RR42_RS22895 0.87 +0.0 470,414 + RR42_RS22900 0.19 +0.1 470,513 + RR42_RS22900 0.25 +0.2 470,550 - RR42_RS22900 0.27 -1.1 470,622 + RR42_RS22900 0.31 +0.5 470,623 - RR42_RS22900 0.31 +0.3 470,642 + RR42_RS22900 0.32 -0.9 470,673 + RR42_RS22900 0.34 +0.2 470,673 + RR42_RS22900 0.34 -0.2 470,674 - RR42_RS22900 0.34 +0.4 470,804 + RR42_RS22900 0.42 -1.2 470,804 + RR42_RS22900 0.42 -0.7 470,805 - RR42_RS22900 0.42 +1.5 470,874 - RR42_RS22900 0.46 +0.7 470,888 + RR42_RS22900 0.47 +1.1 470,939 + RR42_RS22900 0.49 -1.1 470,940 - RR42_RS22900 0.50 +0.2 470,957 + RR42_RS22900 0.51 -1.7 470,957 + RR42_RS22900 0.51 -1.7 470,958 - RR42_RS22900 0.51 +1.0 470,958 - RR42_RS22900 0.51 +0.5
Or see this region's nucleotide sequence