Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22880

Experiment: D-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22875 and RR42_RS22880 overlap by 4 nucleotidesRR42_RS22880 and RR42_RS22885 are separated by 1 nucleotidesRR42_RS22885 and RR42_RS22890 are separated by 129 nucleotides RR42_RS22875: RR42_RS22875 - ABC transporter, at 463,981 to 465,036 _RS22875 RR42_RS22880: RR42_RS22880 - ABC transporter permease, at 465,033 to 465,938 _RS22880 RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806 _RS22885 RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667 _RS22890 Position (kb) 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 464.231 kb on - strand, within RR42_RS22875at 464.231 kb on - strand, within RR42_RS22875at 464.231 kb on - strand, within RR42_RS22875at 464.545 kb on + strand, within RR42_RS22875at 464.546 kb on - strand, within RR42_RS22875at 464.644 kb on + strand, within RR42_RS22875at 464.645 kb on - strand, within RR42_RS22875at 464.645 kb on - strand, within RR42_RS22875at 464.645 kb on - strand, within RR42_RS22875at 464.661 kb on + strand, within RR42_RS22875at 464.661 kb on + strand, within RR42_RS22875at 464.662 kb on - strand, within RR42_RS22875at 464.764 kb on + strand, within RR42_RS22875at 464.802 kb on + strand, within RR42_RS22875at 464.803 kb on - strand, within RR42_RS22875at 464.803 kb on - strand, within RR42_RS22875at 464.842 kb on + strand, within RR42_RS22875at 464.842 kb on + strand, within RR42_RS22875at 464.843 kb on - strand, within RR42_RS22875at 464.845 kb on - strand, within RR42_RS22875at 465.111 kb on + strandat 465.111 kb on + strandat 465.112 kb on - strandat 465.153 kb on + strand, within RR42_RS22880at 465.153 kb on + strand, within RR42_RS22880at 465.153 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.156 kb on + strand, within RR42_RS22880at 465.157 kb on - strand, within RR42_RS22880at 465.157 kb on - strand, within RR42_RS22880at 465.678 kb on - strand, within RR42_RS22880at 465.780 kb on + strand, within RR42_RS22880at 465.780 kb on + strand, within RR42_RS22880at 465.781 kb on - strand, within RR42_RS22880at 466.048 kb on + strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.316 kb on - strand, within RR42_RS22885at 466.408 kb on + strand, within RR42_RS22885at 466.569 kb on - strand, within RR42_RS22885at 466.574 kb on + strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.690 kb on + strand, within RR42_RS22885at 466.691 kb on - strand, within RR42_RS22885at 466.751 kb on - strandat 466.786 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
remove
464,231 - RR42_RS22875 0.24 +0.4
464,231 - RR42_RS22875 0.24 +1.3
464,231 - RR42_RS22875 0.24 +0.1
464,545 + RR42_RS22875 0.53 -0.1
464,546 - RR42_RS22875 0.54 +0.7
464,644 + RR42_RS22875 0.63 -0.1
464,645 - RR42_RS22875 0.63 +0.1
464,645 - RR42_RS22875 0.63 -0.9
464,645 - RR42_RS22875 0.63 +2.7
464,661 + RR42_RS22875 0.64 +0.1
464,661 + RR42_RS22875 0.64 -0.3
464,662 - RR42_RS22875 0.64 -1.1
464,764 + RR42_RS22875 0.74 -0.2
464,802 + RR42_RS22875 0.78 +1.5
464,803 - RR42_RS22875 0.78 +0.3
464,803 - RR42_RS22875 0.78 -0.1
464,842 + RR42_RS22875 0.82 -0.1
464,842 + RR42_RS22875 0.82 +0.0
464,843 - RR42_RS22875 0.82 +0.4
464,845 - RR42_RS22875 0.82 -1.5
465,111 + +0.3
465,111 + -0.7
465,112 - +0.6
465,153 + RR42_RS22880 0.13 +0.9
465,153 + RR42_RS22880 0.13 +1.4
465,153 + RR42_RS22880 0.13 -0.5
465,156 + RR42_RS22880 0.14 -3.1
465,156 + RR42_RS22880 0.14 +0.8
465,156 + RR42_RS22880 0.14 +0.0
465,157 - RR42_RS22880 0.14 +0.9
465,157 - RR42_RS22880 0.14 +1.9
465,678 - RR42_RS22880 0.71 +0.5
465,780 + RR42_RS22880 0.82 +0.5
465,780 + RR42_RS22880 0.82 -0.2
465,781 - RR42_RS22880 0.83 +2.3
466,048 + RR42_RS22885 0.12 +0.2
466,049 - RR42_RS22885 0.13 +0.1
466,049 - RR42_RS22885 0.13 -0.1
466,049 - RR42_RS22885 0.13 +1.9
466,049 - RR42_RS22885 0.13 -0.1
466,171 + RR42_RS22885 0.27 +0.2
466,171 + RR42_RS22885 0.27 -0.3
466,171 + RR42_RS22885 0.27 +0.7
466,316 - RR42_RS22885 0.43 -1.1
466,408 + RR42_RS22885 0.54 -0.0
466,569 - RR42_RS22885 0.73 -0.5
466,574 + RR42_RS22885 0.73 +0.6
466,627 - RR42_RS22885 0.79 +0.2
466,627 - RR42_RS22885 0.79 -0.2
466,627 - RR42_RS22885 0.79 -0.1
466,690 + RR42_RS22885 0.87 +0.3
466,691 - RR42_RS22885 0.87 -0.1
466,751 - -0.4
466,786 - -0.3

Or see this region's nucleotide sequence