Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22120

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22115 and RR42_RS22120 are separated by 59 nucleotidesRR42_RS22120 and RR42_RS22125 are separated by 277 nucleotides RR42_RS22115: RR42_RS22115 - type VI secretion protein, at 301,822 to 302,868 _RS22115 RR42_RS22120: RR42_RS22120 - type VI secretion protein, at 302,928 to 303,434 _RS22120 RR42_RS22125: RR42_RS22125 - hypothetical protein, at 303,712 to 305,112 _RS22125 Position (kb) 302 303 304Strain fitness (log2 ratio) -1 0 1 2at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.097 kb on - strand, within RR42_RS22115at 302.098 kb on + strand, within RR42_RS22115at 302.098 kb on + strand, within RR42_RS22115at 302.125 kb on + strand, within RR42_RS22115at 302.236 kb on + strand, within RR42_RS22115at 302.287 kb on + strand, within RR42_RS22115at 302.288 kb on - strand, within RR42_RS22115at 302.288 kb on - strand, within RR42_RS22115at 302.395 kb on - strand, within RR42_RS22115at 302.465 kb on - strand, within RR42_RS22115at 302.539 kb on + strand, within RR42_RS22115at 302.558 kb on + strand, within RR42_RS22115at 302.653 kb on + strand, within RR42_RS22115at 302.654 kb on - strand, within RR42_RS22115at 302.663 kb on - strand, within RR42_RS22115at 302.749 kb on + strand, within RR42_RS22115at 302.896 kb on + strandat 302.896 kb on + strandat 302.897 kb on - strandat 302.901 kb on + strandat 302.975 kb on + strandat 302.975 kb on + strandat 302.976 kb on - strandat 302.978 kb on - strandat 303.095 kb on + strand, within RR42_RS22120at 303.138 kb on + strand, within RR42_RS22120at 303.139 kb on - strand, within RR42_RS22120at 303.139 kb on - strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.178 kb on - strand, within RR42_RS22120at 303.300 kb on + strand, within RR42_RS22120at 303.504 kb on - strandat 303.506 kb on + strandat 303.507 kb on - strandat 303.515 kb on + strandat 303.526 kb on + strandat 303.526 kb on + strandat 303.527 kb on - strandat 303.531 kb on + strandat 303.531 kb on + strandat 303.531 kb on + strandat 303.532 kb on - strandat 303.532 kb on - strandat 303.543 kb on + strandat 303.637 kb on - strandat 303.705 kb on + strandat 303.730 kb on + strandat 303.732 kb on + strandat 303.732 kb on + strandat 303.733 kb on - strandat 303.832 kb on + strandat 303.833 kb on - strandat 303.833 kb on - strandat 303.833 kb on - strandat 303.946 kb on + strand, within RR42_RS22125at 304.001 kb on + strand, within RR42_RS22125at 304.012 kb on + strand, within RR42_RS22125at 304.043 kb on + strand, within RR42_RS22125at 304.043 kb on + strand, within RR42_RS22125at 304.189 kb on + strand, within RR42_RS22125at 304.263 kb on - strand, within RR42_RS22125at 304.279 kb on + strand, within RR42_RS22125at 304.312 kb on + strand, within RR42_RS22125

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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302,029 + RR42_RS22115 0.20 +1.9
302,029 + RR42_RS22115 0.20 +0.2
302,029 + RR42_RS22115 0.20 -0.8
302,029 + RR42_RS22115 0.20 -1.4
302,029 + RR42_RS22115 0.20 -0.0
302,030 - RR42_RS22115 0.20 -0.7
302,030 - RR42_RS22115 0.20 -0.2
302,030 - RR42_RS22115 0.20 -0.8
302,030 - RR42_RS22115 0.20 +0.1
302,030 - RR42_RS22115 0.20 +0.6
302,097 - RR42_RS22115 0.26 -0.2
302,098 + RR42_RS22115 0.26 -0.8
302,098 + RR42_RS22115 0.26 +0.6
302,125 + RR42_RS22115 0.29 +0.1
302,236 + RR42_RS22115 0.40 +0.5
302,287 + RR42_RS22115 0.44 +1.2
302,288 - RR42_RS22115 0.45 -1.4
302,288 - RR42_RS22115 0.45 +0.2
302,395 - RR42_RS22115 0.55 +0.3
302,465 - RR42_RS22115 0.61 +1.0
302,539 + RR42_RS22115 0.68 +1.7
302,558 + RR42_RS22115 0.70 +0.7
302,653 + RR42_RS22115 0.79 +0.2
302,654 - RR42_RS22115 0.79 +0.0
302,663 - RR42_RS22115 0.80 +1.0
302,749 + RR42_RS22115 0.89 -0.5
302,896 + -0.4
302,896 + -0.4
302,897 - +0.5
302,901 + -1.1
302,975 + -0.9
302,975 + +0.4
302,976 - -0.0
302,978 - -0.6
303,095 + RR42_RS22120 0.33 +0.5
303,138 + RR42_RS22120 0.41 +0.4
303,139 - RR42_RS22120 0.42 +1.0
303,139 - RR42_RS22120 0.42 +0.9
303,177 + RR42_RS22120 0.49 +1.0
303,177 + RR42_RS22120 0.49 +0.1
303,177 + RR42_RS22120 0.49 +0.2
303,178 - RR42_RS22120 0.49 +0.2
303,300 + RR42_RS22120 0.73 +0.9
303,504 - -0.2
303,506 + -0.3
303,507 - +0.8
303,515 + +0.2
303,526 + -0.3
303,526 + -0.4
303,527 - -1.3
303,531 + +0.4
303,531 + -0.3
303,531 + +1.0
303,532 - +0.5
303,532 - +0.0
303,543 + +0.6
303,637 - -0.3
303,705 + +0.5
303,730 + -0.2
303,732 + +0.1
303,732 + +0.7
303,733 - -1.2
303,832 + +2.2
303,833 - -0.2
303,833 - +1.0
303,833 - +0.1
303,946 + RR42_RS22125 0.17 -0.5
304,001 + RR42_RS22125 0.21 +0.1
304,012 + RR42_RS22125 0.21 +1.4
304,043 + RR42_RS22125 0.24 +0.6
304,043 + RR42_RS22125 0.24 +0.8
304,189 + RR42_RS22125 0.34 -0.6
304,263 - RR42_RS22125 0.39 +0.1
304,279 + RR42_RS22125 0.40 +0.2
304,312 + RR42_RS22125 0.43 -1.4

Or see this region's nucleotide sequence